NO24G01220, NO24G01220 (gene) Nannochloropsis oceanica

Overview
NameNO24G01220
Unique NameNO24G01220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2963
Alignment locationchr24:332030..334992 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:332030..334992 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G01220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002866NSK002866Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01220.1NO24G01220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|132009gene_7348Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01220.1NO24G01220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01220 ID=NO24G01220|Name=NO24G01220|organism=Nannochloropsis oceanica|type=gene|length=2963bp
ATGAACCCCAACCAGCCACCACCGGTAAAATTCGGGCAACGAGGCGGCGC
GTCTGGTTCGGCGGGAGGGACCATCACCGGTGGACCGCAACAACAGCAGC
AGGTTCCCTGCTTCGGCGGCGGCGCAAGAGAGGGCGGAGGAACGTCACAG
CATCAGCAACCGCCTCGTAACGCATTTCCTGCTTTTGGTGGTGGTGGTAC
CGGAGGTATTGCCAGTGGAGGATTCAATCAGGCACCAACAGCATCTTCTA
ACGCGTGGGGTGCCGGCGGAGGAGGAGCAGGAGGGGGTAGTTTTGGTTCA
ACAGGTGACAGCAGCAACAACGCTCGTCCTCCTTCATCTACCCCTTCCTT
TGGTCAAACCAGTACTAACAGTGGCTTCAATACAACCAAAAAGAGGAGCA
CGACATTCGGGGTGGTCGGTAATGATAGCAGCAGTAGCGGTTTCGGTAGC
AGCAGCGTTCGCGGCGCTGGTGGGAGAGGTAGACGAGGAGTACCTGGTGG
ACCCCCGTCCTCGTCGCAGCACGCAGCAGTTTTTGGCGCGACAGCCGGAG
GAAGGGGAGGAGAGGCCTTCAGATTCTCAGAACAGACTCCCCCTTCCGGT
AGAGCCAGTGGCGCGGGCGCGAGAGAAGGGGGACCGCCCAGCTTTGGAGG
AGGATGGGGAGGAGAGGCCTTTGGATCGTCACAAGAGAGCACGCAGGTCC
GGTTCGGTGGACATACTGCTGCTGGTAATACTGGTGGTGCTGGCGCTGCA
GGAGGAGGAACGTCAAGCTTCGGTACTGCTTCCGCTGGCGGTGCAACCGG
TGGCTTTGGTACTCCTGCGGGGCCGCCTTCCTTTTCCACTCACACTACTC
CGTTGTCGTCTTTTTCGACTGGGAAGAAAACAAGTCCCAGTGGAGTTCCT
GCATTCCAAATACCTGGAGAAGGAGGTGGTGGTCGTGGAGGTGGAGGACT
ACCAAGCTTTGGTGGTTCTGCTGCGGGTGGTGGGTTCGGCGGGGCAAGAG
GACGAGGAGGAACGGGGGGAGGAAATATCTTTTCGCGGAATCCCTCTCTA
CAGCAGCAGCAAGAACAGCAAGCCCCTTCGACGCCTATTCCTGCATTTGG
TGCTGCTTTGATGAGGAGCAACAGCAAAAGTACGGGGAGCAGCAATAGCG
GGgtaacgttcggtggtcgaggaggggagggagggaggggggaaaggacg
ggatgcctgcctttggaatgagaggaggtgctctgaagCGAGGGCGAGGA
GGAAGAAGGGGAGGAGCGGAGGGAGGAAGGGGAAGGGGGGGCAATTTTGA
GGCGCTGGATGGACGGGGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAACAGCAGCAGTCTGTGCAATTTGGTCAGCAGCAGCAA
CTGGATGCACAAACACCTTCGTTTGTTCCCCCTTCCTCTTCTTCCGCTCG
CGGGGGTTTGGCACGAGGAGGAAGGGAGGGAGGACGAGGTGGGGGTCGAG
GAGTGAGGGAGGGAGGGAGAGAGGGAGGAAGGGGGGTAGGAAAAGGGAGG
GGAGGGTTTGGGCATAAAACATGGACAAGGGCAGGAATGGAGGCGGGGTC
TACCCCTTCCTCCTTCGCGCCCTCATCGACGTCAGAGACCTGGCAGCGAG
GAGAATTCTCGCAGGAGGAGGAGGCGGAAGAGACGGAGGAGCAAGGAGGG
GAGGAAGGGGTGCAGCATCGGCAGCAGCAATACCAGGGAGGAGGGAGGAA
GGACGGTTTTGAGGGGCAGGAGGGGAAAGGACAGCAACAGAGAGTTGCTT
TGCAGGCGCGATTGACGGCGCGTGGACGCACTCTTGGGGCTGCTGCTGAT
ACTGCTGGCACTGTTGCTGCTGCTACTGTAGGAGGTGGTGATGAGAGAGA
AGGAGAAGGCGGAGAAACACCAGCTTTCATAAGGGGAAATCGCCCCTTGG
TTTCCCCCACCCTGGCCACCCCAAGCAGCAGTAACCACCGTTGCAGTAGC
AGCAATAACAGCAGCAGCAGTGGCAGCGGCACCATTGACCGTACTCACAC
ATCTTCCCCCACTTCTGCTTCCACGCCTTCTTCCCTCCCTCCCTCGACCC
TAATAAATGACGTGGCAAAGAGAACTTTACGCTACCACATCCGCGCGGTG
GAAAGCCACAATAAAAACCTCCGGATGAAGGCGGGCCTGACACGGGCAAG
TCGCCTCGAGGAGGACGAGGGGGAGGGAGGGGAAGAGGAAGGGGCAGGAG
GGGCAGGAGGGGCAGGAGGGCTGAACCTAGTGACGCCTCCTCCGTGTTGG
GGACCGGTTTACTCAAAGCAGGAGATCGCGGTGGCGCCTGGGGGAAGGCG
AGGGAGGGAAGGAGGGAGGGAGGGAGGCGCAGTAGCAGGAAGACGTGGGA
CATTCACGGTCAGGAGTGAAGACGCAGAAGACGCAGGAGGAGGAGGAGGA
GTTGGAGGAGGAGGAGGGGTGCAACAGAAGCAGGGTCAGCAGGGAGACCA
GGAGCAAGCACCCGCCACTCCCCTTCCTTCCGCCTGTCCGCCCATGGCGT
CGCTTACATCCACCGCCCGTCCTCCCTCCACCCCTCAGTCGCAACAACAG
CAACGGCAATTCCCACAGCCCCTTTCTCCTCTCTCCTCCCAGCAGCATCA
GCAGCAGCAGCCATCGAACACACTGTACCCCTCATCTTCCTCCTCCTCTG
CCTCCTTCACCGCCCCCTCGCTCTCCTCCTTCTATCCCACCACCACCCAA
CGCCACCTCCAACCCGGCGCACCTCAAGGGAAGGACGAGGGAGGGAAGGA
TGGATCGAATGAAGACGTGCTCATCCAAAACGAGTGGATCACGGGCGCGA
CCTCCTCGGTCGGGACCTGCCTCTCCATGTGCCCCCCTGACGAAGTCCTC
ATGCGGGAGTCCAACCGCAACAAGCTGGAAGACCGGCCCTCCCTCCCCCC
TCCCTGTCGATGA
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protein sequence of NO24G01220.1

>NO24G01220.1-protein ID=NO24G01220.1-protein|Name=NO24G01220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=959bp
MNPNQPPPVKFGQRGGASGSAGGTITGGPQQQQQVPCFGGGAREGGGTSQ
HQQPPRNAFPAFGGGGTGGIASGGFNQAPTASSNAWGAGGGGAGGGSFGS
TGDSSNNARPPSSTPSFGQTSTNSGFNTTKKRSTTFGVVGNDSSSSGFGS
SSVRGAGGRGRRGVPGGPPSSSQHAAVFGATAGGRGGEAFRFSEQTPPSG
RASGAGAREGGPPSFGGGWGGEAFGSSQESTQVRFGGHTAAGNTGGAGAA
GGGTSSFGTASAGGATGGFGTPAGPPSFSTHTTPLSSFSTGKKTSPSGVP
AFQIPGEGGGGRGGGGLPSFGGSAAGGGFGGARGRGGTGGGNIFSRNPSL
QQQQEQQAPSTPIPAFGAALMRSNSKSTGSSNSGRGRGGRRGGAEGGRGR
GGNFEALDGRGQQQQQQQQQQQQQQQQQQSVQFGQQQQLDAQTPSFVPPS
SSSARGGLARGGREGGRGGGRGVREGGREGGRGVGKGRGGFGHKTWTRAG
MEAGSTPSSFAPSSTSETWQRGEFSQEEEAEETEEQGGEEGVQHRQQQYQ
GGGRKDGFEGQEGKGQQQRVALQARLTARGRTLGAAADTAGTVAAATVGG
GDEREGEGGETPAFIRGNRPLVSPTLATPSSSNHRCSSSNNSSSSGSGTI
DRTHTSSPTSASTPSSLPPSTLINDVAKRTLRYHIRAVESHNKNLRMKAG
LTRASRLEEDEGEGGEEEGAGGAGGAGGLNLVTPPPCWGPVYSKQEIAVA
PGGRRGREGGREGGAVAGRRGTFTVRSEDAEDAGGGGGVGGGGGVQQKQG
QQGDQEQAPATPLPSACPPMASLTSTARPPSTPQSQQQQRQFPQPLSPLS
SQQHQQQQPSNTLYPSSSSSSASFTAPSLSSFYPTTTQRHLQPGAPQGKD
EGGKDGSNEDVLIQNEWITGATSSVGTCLSMCPPDEVLMRESNRNKLEDR
PSLPPPCR*
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Synonyms
Publications