NO24G01040, NO24G01040 (gene) Nannochloropsis oceanica

Overview
NameNO24G01040
Unique NameNO24G01040
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3089
Alignment locationchr24:288998..292086 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:288998..292086 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR015915Kelch-typ_b-propeller
Homology
BLAST of NO24G01040 vs. NCBI_GenBank
Match: XP_005756374.1 (hypothetical protein EMIHUDRAFT_108057 [Emiliania huxleyi CCMP1516] >EOD03945.1 hypothetical protein EMIHUDRAFT_108057 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 87.0 bits (214), Expect = 1.300e-13
Identity = 87/335 (25.97%), Postives = 123/335 (36.72%), Query Frame = 0
Query:    4 SRYLHRIASSSTSRTAYMFGGMGGDGVLHDLWQLQLEGRWGERVRCTSLPLASSPTSPHPSYRFACSFNLVPSLDPPPLPQFST---------------------------XXXXXXXXXXXXXXXXXXXXXXVPP-------ARWGHSSVVVKGQGGRXXXXXXXXXAKVLIFGGSCPGEAFGDLWLWEGGRVGGRWREIEAADPGPGPRGGHSAAIVEEGWEGGEREGLRKRWMYVFGGNTLANSFADVWRLALEDGWLQEGGRRGGKGGGLARWEKVDVMGRERPPARVGHVSFAVGHRLYIYGGRDFIQGTFHSAQEIWCLNTNTFTWKSL 305
            +R+LHR A+  T R  Y+FGG G  G  +D+W L          +  +L  A++P SP  + R A     VPS  P P+ + S                                                   PP        RW HS+V    + GR          +VL+FGGS PG  F DL  ++      +W  +      P  R GH A  V +              M+VFGGNT   SF D+W   ++                L RW  +   G   P  RVGH   +VG RL + GGR++    F   + +   +T+T  W  +
Sbjct:  100 ARFLHR-AACPTGRLMYVFGGQGEAGEFNDMWVLD---------KRVALSEATAPGSPPRARRRAWRRVEVPSDTPAPVQRQSATLTAVGSQLLMFGGRWGESVFLNDAWLYDTLRGRWQCVHESEETYAELEAPPPRADQPCPRWAHSAV----RFGR----------RVLVFGGSAPGRCFSDLHWFDLATC--KWSRVAPEGRSPAQRSGHCACAVGDA------------SMFVFGGNTTRASFNDLWEFQVD----------------LNRWRPIKGSG-AAPSGRVGHTITSVGSRLLVLGGREYATNQFD--RVLHAFDTSTRRWSQV 377          
BLAST of NO24G01040 vs. NCBI_GenBank
Match: CBN77449.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 85.9 bits (211), Expect = 2.900e-13
Identity = 79/280 (28.21%), Postives = 109/280 (38.93%), Query Frame = 0
Query:  110 VPPARWGHSSVVVKGQGGRXXXXXXXXXAKVLIFGGSCPGEAFGDLW------------LWEGGRVGGRWREIEAADPG----PGPRGGHSAAIVEEGWEGGEREGLRKRWMYVFGGNTLANSFADVWRLALEDGWLQEGGRRGGKGGGLARWEKVDVMGRERPPARVGHVSFAVGHRLYIYGGRDFIQGTFHSAQEIWCLNTNTFTWKSLHXXXXXXXXXXXXXXXEAGRTGVAIFPHPAGICVYGGLGPGGG--TMGGFLLLDIV----GLMKHRRRR 368
            VP  RWGH+ V  +G               + +FGGS PG AF  LW            L   GR      E   A+      P  RGGHSA +V +              +Y+FGGN   + F D+W + L D                  W +V+    + PPAR+GH + AVG+R+ I+GGR+F  G F      + ++   F                         TG A      G+ + GG+ P G   TM  +  LD+V    G  + RRRR
Sbjct:  389 VPAGRWGHTMVEHRG--------------ALYMFGGSSPGTAFAGLWRLDVSVSPCVWSLMTPGRTAVSLEEGGLAEAAGGERPPARGGHSATVVRD-------------TLYIFGGNITQSMFRDLWAIDLPD---------------CKAWRQVEETD-DFPPARIGHSAVAVGNRILIFGGRNFKSGVFTCGLSCFDVDLQAFVHFPHAEAFSRKSSQPRGMWYGLRMTGHAAMHCSRGLLIVGGMLPIGQSFTMRAW-TLDVVTGCWGRKQQRRRR 624          
BLAST of NO24G01040 vs. NCBI_GenBank
Match: XP_022839173.1 (Kelch-type beta propeller [Ostreococcus tauri] >CEF98267.1 Kelch-type beta propeller [Ostreococcus tauri])

HSP 1 Score: 74.3 bits (181), Expect = 8.800e-10
Identity = 56/180 (31.11%), Postives = 79/180 (43.89%), Query Frame = 0
Query:  111 PPARWGHSSVVVKGQGGRXXXXXXXXXAKVLIFGGSCPGEAFGDLWLW----EGGRVGGRWREIEAAD--PGPGPRGGHSAAIVEEGWEGGEREGLRKRWMYVFGGNTLANSFADVWRLALEDGWLQEGGRRGGKGGGLARWEKVDVMGRERPPA-RVGHVSFAVGHRLYIYGGRDFIQG 284
            P ARWGHS+V + G              K+++FGGS     F D WL     E  ++   W  +   +  P P PR G +A +V               ++Y+FGG  +++ F DVWRL L              G    RWE+    G   PPA RVGH +  +G R+ + GGR   +G
Sbjct:  283 PAARWGHSAVSLDG--------------KLILFGGSNTTHCFNDTWLLELVVENNKLVATWTLLVDGNKMPAPPPRAGQTACLV-------------GTFLYIFGGCHISDVFNDVWRLDL-----------SAVGRSSLRWERFLADG--TPPAPRVGHAAVVLGDRIILCGGRGSARG 422          
BLAST of NO24G01040 vs. NCBI_GenBank
Match: OUS48575.1 (hypothetical protein BE221DRAFT_203722 [Ostreococcus tauri])

HSP 1 Score: 74.3 bits (181), Expect = 8.800e-10
Identity = 56/180 (31.11%), Postives = 79/180 (43.89%), Query Frame = 0
Query:  111 PPARWGHSSVVVKGQGGRXXXXXXXXXAKVLIFGGSCPGEAFGDLWLW----EGGRVGGRWREIEAAD--PGPGPRGGHSAAIVEEGWEGGEREGLRKRWMYVFGGNTLANSFADVWRLALEDGWLQEGGRRGGKGGGLARWEKVDVMGRERPPA-RVGHVSFAVGHRLYIYGGRDFIQG 284
            P ARWGHS+V + G              K+++FGGS     F D WL     E  ++   W  +   +  P P PR G +A +V               ++Y+FGG  +++ F DVWRL L              G    RWE+    G   PPA RVGH +  +G R+ + GGR   +G
Sbjct:  283 PAARWGHSAVSLDG--------------KLILFGGSNTTHCFNDTWLLELVVENNKLVATWTLLVDGNKMPAPPPRAGQTACLV-------------GTFLYIFGGCHISDVFNDVWRLDL-----------SAVGRSSLRWERFLADG--TPPAPRVGHAAVVLGDRIILCGGRGSARG 422          
BLAST of NO24G01040 vs. NCBI_GenBank
Match: GAQ79092.1 (Acyl CoA Binding Protein [Klebsormidium nitens])

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-7
Identity = 73/308 (23.70%), Postives = 104/308 (33.77%), Query Frame = 0
Query:    3 PSRYLHRIASSSTSRTAYMFGGMGGDGVLHDLWQLQLEGRWGERVRCTSLPLASSPTSPHPSYRFACSFNLVPSLDPPPLPQFS--------TXXXXXXXXXXXXXXXXXXXXXXVPPARWGHSSVVVKGQGGRXXXXXXXXXAKVLIFGG-SCPGEAFGDLWLWEGGRVGGRWREIEAADPGPGPRGGHSAAIVEEGWEGGEREGLRKRWMYVFGGNTLANSFADVWRLALEDGWLQEGGRRGGKGGGLARWEKVDVMGRERPPARVGHVSFAVGHRLYIYGGRDFIQGTFHSAQEIWCLNTNTFTW 302
            P RY H +A        ++ GG  G   L+DLW L LE     RV      +  +P S              P L PPPLP  +        +                         ++W            R         +++++FGG     +   D+ + +       W     +   P PR  H+A +               R+M VFGG TLAN + D+  L LE                   W + +  G + P  R GH S A+G   YI GG D      H   +   LN N+FTW
Sbjct:  197 PPRYQHEVA--VVGDQLFVVGGNSGGRYLNDLWVLSLENFTWSRVE----QIGPAPPSKEED---------APLLAPPPLPPLAGHSIIASGSTLLAVGGHTKEPAPTVQVRSFDTTTSKWSILETTGDAPAARGGQTVVKAGSRLVLFGGEDRKRKLLNDVHVLD--LETKAWDSPSTSGAPPSPRCDHTATL------------HNGRYMLVFGGGTLANCYNDLHLLDLE----------------TFEWSRPETHG-DTPHPRSGHASVAIGDTWYIVGGGD----NAHGIADTLALNLNSFTW 454          
The following BLAST results are available for this feature:
BLAST of NO24G01040 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 5
Match NameE-valueIdentityDescription
XP_005756374.11.300e-1325.97hypothetical protein EMIHUDRAFT_108057 [Emiliania ... [more]
CBN77449.12.900e-1328.21conserved unknown protein [Ectocarpus siliculosus][more]
XP_022839173.18.800e-1031.11Kelch-type beta propeller [Ostreococcus tauri] >CE... [more]
OUS48575.18.800e-1031.11hypothetical protein BE221DRAFT_203722 [Ostreococc... [more]
GAQ79092.11.400e-723.70Acyl CoA Binding Protein [Klebsormidium nitens][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G01040.1NO24G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|131608gene_7334Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G01040.1NO24G01040.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G01040 ID=NO24G01040|Name=NO24G01040|organism=Nannochloropsis oceanica|type=gene|length=3089bp
GGGGGGGTAAGAGTAAGGCATGAAAATAAGATAGCCTCACGGCCCTTTTG
CCCCCGTGCAATCACTCTGTCACGCAGCTCGCAAGTCGTGCACCCACATG
CTACCAGTCATACAGCAGCCACGTGCTACCCACCGGGTCAACCATCGAGC
TGCGTACACCTTGCATCGCCAAATCTTAACTCTTCTTGCCTCACCCCCTC
AATTATCGATCCCAAGTTCCCAGGCCTCATACCCTACCCCATAATTGCAC
GCAGTACAGGCGAAACGGATGGCTGACGACAACAACAACGACGACAACCC
TTCCTACCCCCCTCTATCCTGCAGTGGGTCCTACGGGCCTTCTCGCCCAC
TGGGAAAAGCAGGAGGCATGGCAATGTCACCACCATTACCACCGCCACCA
CCAGCGCCACTACTGGCCCCCCTGGCCCCAGTCTCCTCAACGAATCCACA
TTTCCCTCGGACGTCCTCTTTCACACCCTCTCCTACCTTGACCTCCCATC
TCTCCTCCGCTCCCTCGCCCCAGCCTGCCCCTCCTTCCACTCCCTCATTT
CCTCCTCCCGACATGACATCCAATCTCTCTACCGCTGCCTTCTGCTCAAG
GAAGTAGGGGGGACTTAGGCTGCCTTGGGACGTATGGGATCGACGACGTA
AATTGGCGAGAAGTTCTAGGGATATGGTGGAGGGGAGAGTTGGCCTGGGA
GGAAGTCAAAGAAGACGACGGAGGGAGAGAGCGCGGAGCGGAGGGTTTAG
GAGGAGGAAGAGGAGGGGAAAGCATGTTGCCATCACGGTATCTTCATCGG
ATTGCCTCGTCGTCCACGAGTCGgtgagtggagaaggagggactggattg
gcagggggaaaggagttaagcgaaaatctcggacgatacaccagccggct
gttctctcacttcattcgatcctccccttcccctccctccctttctcacc
ttatccttccctccccctccctccttcaccatatctcttcctccgttctc
ttcccctcactggcagGACTGCCTACATGTTTGGAGGGATGGGTGGTGAC
GGCGTGCTGCACGATTTGTGGCAGCTGCAGCTTGAAGGGAGGTGGGGGGA
GAGGGTCAGgtgaagagggagggagggagggagggagagagggagggggg
gggaaggagagcaagaagaggttttgaagatagcaccgaccatccccctc
ccctctgttcctctgcaaacacaccctccgaatttctagGTGCACCTCCC
TCCCTCTCGCCTCCTCCCCCACCTCACCCCATCCCTCCTATCGCTTCGCC
TGCTCCTTCAATCTCGTCCCTTCCCTCGACCCCCCCCCCCTTCCTCgtcc
tcctcttcagctaagcttctcctatttggcggagctagcgccgatggcaa
ttttctaggggacacgtggacccttgtcctccctccctcccttcctccct
ccctccctccctcccttcctccatggcaagAATTTTCCACCACAGACGAA
GATGAAGAAGAGTCAAACGAAGGGGAAGCGAGAGCAGGAGGGAGGGAGAG
GGAAAGGGTGCCTCCGGCACGCTGGGGGCATAGCAGTGTGGTGGTGAAGG
GGCAGGGAGGGAGGGAGGGAGGGCAGGAGGGAGGCAGGGAGGCGAAGGTG
CTGATTTTCGGAGGCTCGTGCCCCGGGGAGGCGTTTGGGGACCTCTGGCT
ATGGGAGGGAGGGAGGGTGGGAGGAAGGTGGAGAGAGATTGAGgtaggga
gagagatggaaggatgggagggagggtggatgaatgacaagcgtagtggg
agggaggaagggagggagggaggcaggggtgggtgggaaacgatagatct
cacttccataagaacaggcctctttgacgcattttccctcctttcctccc
tccctccttccctctctcagGCAGCAGACCCTGGTCCAGGTCCTCGCGGG
GGTCATTCGGCCGCCATCGTGGAGGAGGGATGGGAGGGAGGAGAGAGGGA
GGGATTGAGGAAGAGGTGGATGTATGTGTTCGGAGGGAACACGCTTGCAA
ATAGCTTCGCAGACGTATGGAGGCTCGCGCTGGAGGACGGATGGTTGCAG
GAAGGAGGACGAAGAGGGGGGAAGGGAGGGGGGCTAGCGAGGTGGGAGAA
GGTGGATGTGATGGGCCGAGAGgtacggagggagggagggaggaagggga
gaggtatgaaagaggagtgggagggagagggtgtgcttggtacatggcga
ggagtagagaacaattgacaaacgcatttcccctccctctcaccgttccc
ccctttctcgctcgttccgtcctcctcgcccttgcaactttgtgctcggg
tcgatcatgctttctcggttttggctatcatctccctccctccctccttc
cctccctccctccctccctccctccctccctccctagCGCCCGCCTGCCC
GAGTCGGCCATGTATCTTTCGCTGTGGGCCACCGGCTGTACATCTATGGA
GGCCGCGATTTCATTCAAGgtaggaaggatggaaaggagagaaggaaggc
ggggaaggagggaaggagggatgtcgttgctgcaagcccggccactgtca
cagccatttcatcgatctcttccaccctcgttctctcccaccttcacagG
CACCTTCCACTCTGCCCAAGAAATATGGTGCCTTAATACCAACACCTTCA
CATGGAAATCTCTCCACCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCTTTGCTGGAGGCGGGAAGGACGGGGGTTGCCATTTTCCCGCACCC
TGCCGGTATTTGTGTCTATGGTGGGCTTGGGCCAGGGGGAGGGACGATGG
GTGGATTTCTCTTGgtaaggagggagggatggatggagggagggagggaa
taaggcggagatgtctgaccatggagggcatgggcaagggagagagggag
gggaaaagggagacggtcaccgaaatgcacgctcttactgatgagccatt
tttatttcctccctttcgttaatacctagTTGGACATAGTAGGTTTGATG
AAACACCGCAGGCGACGAGGAGACGGAGACGAAGAATAA
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protein sequence of NO24G01040.1

>NO24G01040.1-protein ID=NO24G01040.1-protein|Name=NO24G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MLPSRYLHRIASSSTSRTAYMFGGMGGDGVLHDLWQLQLEGRWGERVRCT
SLPLASSPTSPHPSYRFACSFNLVPSLDPPPLPQFSTTDEDEEESNEGEA
RAGGRERERVPPARWGHSSVVVKGQGGREGGQEGGREAKVLIFGGSCPGE
AFGDLWLWEGGRVGGRWREIEAADPGPGPRGGHSAAIVEEGWEGGEREGL
RKRWMYVFGGNTLANSFADVWRLALEDGWLQEGGRRGGKGGGLARWEKVD
VMGRERPPARVGHVSFAVGHRLYIYGGRDFIQGTFHSAQEIWCLNTNTFT
WKSLHPSLPPSLPPSLPPLLEAGRTGVAIFPHPAGICVYGGLGPGGGTMG
GFLLLDIVGLMKHRRRRGDGDEE*
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Synonyms
Publications