NO24G00940, NO24G00940 (gene) Nannochloropsis oceanica

Overview
NameNO24G00940
Unique NameNO24G00940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1054
Alignment locationchr24:255735..256788 -

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Properties
Property NameValue
DescriptionSerine/threonine-protein kinase PrkC
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:255735..256788 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR011009Kinase-like_dom
IPR020636Ca/CaM-dep_Ca-dep_prot_Kinase
IPR000719Prot_kinase_dom
Homology
[Close]
BLAST of NO24G00940 vs. NCBI_GenBank
Match: XP_022805450.1 (uncharacterized protein LOC111342617 [Stylophora pistillata])

HSP 1 Score: 70.5 bits (171), Expect = 8.500e-9
Identity = 52/180 (28.89%), Postives = 88/180 (48.89%), Query Frame = 0 
Query:   84 ELVSVVDRRERE--EEEGVVAKTWTRLL---REAPVLAEALIISGLQHPSVLPIYGISLAP---TNTVYLLSELCVSNLESHVLS----------DICSPSDVARSSFALLQAVGFLLANGIVHRDLKHSNILLARDSTLKVADMRHALRVQTLPSFLPPSSFPDAGTPLYLAPRKDGSR 246
            E  +V++ + +   EE+ +  K W   L     + +LAEA ++  L HP V+  YG SL        V ++ E C  NL++ + +          DI +   V R +  + +A+ F+   G+VHRDL   NILL+ D+++K+AD+  +   + +           AGT LY+AP    S+
Sbjct:  729 EFATVIEGKMKRHGEEQNIALKIWKEALDINNASQILAEASLLRRLDHPYVVKFYGTSLLEKDGVTKVIMVLEKCKENLKNRIFNNRAFVPAETKDIANIKTVKRWAREISEALVFIHKEGVVHRDLTMENILLSEDNSVKIADVGESKEAKYITGSW-------AGTALYMAPEVFNSK 901
[Close]
BLAST of NO24G00940 vs. NCBI_GenBank
Match: PFX33626.1 (Dual specificity protein kinase shkA [Stylophora pistillata])

HSP 1 Score: 68.2 bits (165), Expect = 4.200e-8
Identity = 48/157 (30.57%), Postives = 74/157 (47.13%), Query Frame = 0 
Query:  100 VVAKTWTRLLREAPV---LAEALIISGLQHPSVLPIYGISLAPTN---TVYLLSELCVSNLESHVL-----------SDICSPSDVARSSFALLQAVGFLLANGIVHRDLKHSNILLARDSTLKVADMRHALRVQTLPSFLPPSSFPDAGTPLYLAP 240
            V  K W   L +A     L+E  I+  L +PS++  YG +L          L+ ELC  NL  H+            S + +  DV R +  +  A+ ++   GIVHRDLK  N+LL+ ++  KVAD+  +   + +   +        GTP+YLAP
Sbjct: 3646 VAVKVWNEELNDATASAFLSETEILRKLNYPSIVKFYGAALRKEGDQLKAILVLELCKENLMRHIFQHKSKIPGEPSSSVTATRDVIRWAKEIADALEYIHRQGIVHRDLKLENVLLSLENVAKVADVGVSKEAKAITGTM-------TGTPMYLAP 3795
[Close]
BLAST of NO24G00940 vs. NCBI_GenBank
Match: XP_022797833.1 (uncharacterized protein LOC111336065 [Stylophora pistillata])

HSP 1 Score: 68.2 bits (165), Expect = 4.200e-8
Identity = 48/157 (30.57%), Postives = 74/157 (47.13%), Query Frame = 0 
Query:  100 VVAKTWTRLLREAPV---LAEALIISGLQHPSVLPIYGISLAPTN---TVYLLSELCVSNLESHVL-----------SDICSPSDVARSSFALLQAVGFLLANGIVHRDLKHSNILLARDSTLKVADMRHALRVQTLPSFLPPSSFPDAGTPLYLAP 240
            V  K W   L +A     L+E  I+  L +PS++  YG +L          L+ ELC  NL  H+            S + +  DV R +  +  A+ ++   GIVHRDLK  N+LL+ ++  KVAD+  +   + +   +        GTP+YLAP
Sbjct: 1893 VAVKVWNEELNDATASAFLSETEILRKLNYPSIVKFYGAALRKEGDQLKAILVLELCKENLMRHIFQHKSKIPGEPSSSVTATRDVIRWAKEIADALEYIHRQGIVHRDLKLENVLLSLENVAKVADVGVSKEAKAITGTM-------TGTPMYLAP 2042
[Close]
BLAST of NO24G00940 vs. NCBI_GenBank
Match: OYV99246.1 (hypothetical protein B7Z62_01280 [Deltaproteobacteria bacterium 37-65-8])

HSP 1 Score: 67.0 bits (162), Expect = 9.400e-8
Identity = 42/132 (31.82%), Postives = 68/132 (51.52%), Query Frame = 0 
Query:  115 LAEALIISGLQHPSVLPIYGISLAPTNTVYLLSELCVSNLESHVLSDIC-----SPSDVARSSFALLQAVGFLLANGIVHRDLKHSNILLARDSTLKVADMRHALRVQTLPSFLPPSSFPDAGTPLYLAPRK 242
            LAEA ++  L HP+++ +Y +      TVY+  E     LE   L+D+      SP ++A     + +A+G+  + GIVHRD+K  NIL+  D   K+ D   A R++     L   +    GTP Y++P +
Sbjct:   52 LAEARVLGRLDHPNIVRVYNVD-EDQGTVYIAMEF----LEGEALNDLAKRKRLSPGEIADLGARIAEALGYAHSKGIVHRDVKPGNILVRSDGKPKITDFGIA-RIEDTAEHLRTQAGEVLGTPAYMSPEQ 177
[Close]
BLAST of NO24G00940 vs. NCBI_GenBank
Match: OYV68062.1 (hypothetical protein B7Z74_08800 [Deltaproteobacteria bacterium 21-66-5])

HSP 1 Score: 66.6 bits (161), Expect = 1.200e-7
Identity = 42/132 (31.82%), Postives = 68/132 (51.52%), Query Frame = 0 
Query:  115 LAEALIISGLQHPSVLPIYGISLAPTNTVYLLSELCVSNLESHVLSDIC-----SPSDVARSSFALLQAVGFLLANGIVHRDLKHSNILLARDSTLKVADMRHALRVQTLPSFLPPSSFPDAGTPLYLAPRK 242
            LAEA ++  L HP+++ +Y +      TVY+  E     LE   L+D+      SP ++A     + +A+G+  + GIVHRD+K  NIL+  D   K+ D   A R++     L   +    GTP Y++P +
Sbjct:   52 LAEARVLGRLDHPNIVRVYNVD-EDQGTVYIAMEF----LEGEALNDLAKRKRLSPGEIADLGARIAEALGYAHSKGIVHRDVKPGNILVRPDGKPKITDFGIA-RIEDTAEHLRTQAGEVLGTPAYMSPEQ 177
[Close]
BLAST of NO24G00940 vs. NCBI_GenBank
Match: WP_009943029.1 (serine/threonine protein kinase [Saccharopolyspora erythraea] >CAM01398.1 putative serine/threonine protein kinase [Saccharopolyspora erythraea NRRL 2338] >EQD84748.1 protein kinase [Saccharopolyspora erythraea D] >PFG95179.1 protein kinase-like protein [Saccharopolyspora erythraea NRRL 2338])

HSP 1 Score: 66.2 bits (160), Expect = 1.600e-7
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 0 
Query:  117 EALIISGLQHPSVLPIYGISLAPTNTVYLLSELCVSNLESHVLSDICS-----PSDVARSSFALLQAVGFLLANGIVHRDLKHSNILLARDSTLKVADMRHALRVQTLPSFLPPSSFPDAGTPLYLAPRK 242
            EA +++GL HP ++P++  S A  + +YL+ +L    +E   L+DI       P+ VA     L   + ++ ANGIVHRD+K SN+L+ARD  + +AD   +  +  +      SS    GT  Y+AP +
Sbjct:   56 EARLLAGLSHPGLVPVFDYS-AGGDELYLVMQL----VEGQTLADILESGPLPPAQVADLGHRLADVLAYVHANGIVHRDVKPSNVLVARDGRVYLADFGISRLIDAVGRM--TSSGAIMGTATYMAPEQ 178
[Close]
BLAST of NO24G00940 vs. NCBI_GenBank
Match: OIP33385.1 (hypothetical protein AUK27_10640 [Deltaproteobacteria bacterium CG2_30_66_27])

HSP 1 Score: 66.2 bits (160), Expect = 1.600e-7
Identity = 41/132 (31.06%), Postives = 69/132 (52.27%), Query Frame = 0 
Query:  115 LAEALIISGLQHPSVLPIYGISLAPTNTVYLLSELCVSNLESHVLSDIC-----SPSDVARSSFALLQAVGFLLANGIVHRDLKHSNILLARDSTLKVADMRHALRVQTLPSFLPPSSFPDAGTPLYLAPRK 242
            +AEA ++  L HP+++ +Y +      TVY+  EL    LE   L+D+      SP ++A     + +A+G+  + G+VHRD+K  NIL+  D   K+ D   A R++     L   +    GTP Y++P +
Sbjct:   52 IAEARVLGRLDHPNIVRVYNVD-EDQGTVYIAMEL----LEGEGLNDLAKRKRFSPEEIADLGATIAEALGYAHSKGVVHRDVKPGNILVRSDGKPKITDFGIA-RIEDSAEHLMTQAGEVLGTPAYMSPEQ 177
[Close]
BLAST of NO24G00940 vs. NCBI_GenBank
Match: OUX50289.1 (protein kinase [Rhodopirellula sp. TMED283])

HSP 1 Score: 66.2 bits (160), Expect = 1.600e-7
Identity = 47/143 (32.87%), Postives = 71/143 (49.65%), Query Frame = 0 
Query:  107 RLLREAPV---LAEALIISGLQHPSVLPIYGISLAPTNTVYLLSELCVSNLESHVLSDICSPS-DVARSSFALLQAVGFLLANGIVHRDLKHSNILLARDSTLKVADMRHALRVQTLPSFLPPSSFPDAGTPLYLAPRKDGSR 246
            RL  EA +   LAEA   + LQHP+++P+Y          + +  +    L   V++    P  ++A    A+ +A+GF    GI+HRDLK SNILLA+D T  + D   A +  +  S          GTP Y++P + G R
Sbjct:  109 RLASEADLQRFLAEASATARLQHPNIVPVYEAGDIEGRPFFSMQLVIGETLSERVINQGPLPQREIAAIVAAIARAIGFAHEQGILHRDLKPSNILLAKDGTPLITDFGLAKQSDSDASLTRSGML--VGTPAYMSPEQAGGR 249
[Close]
BLAST of NO24G00940 vs. NCBI_GenBank
Match: XP_022796287.1 (uncharacterized protein LOC111334742 [Stylophora pistillata] >PFX22057.1 Dual specificity protein kinase shkA [Stylophora pistillata])

HSP 1 Score: 66.2 bits (160), Expect = 1.600e-7
Identity = 57/178 (32.02%), Postives = 85/178 (47.75%), Query Frame = 0 
Query:   91 RREREEEEGVVAKTWTRLLR---EAPVLAEALIISGLQHPSVLPIYGISLAPTNT----VYLLSELCVSNLESHVL----------SDICSPSDVARSSFALLQAVGFLLANGIVHRDLKHSNILLARDSTLKVADMRHALRVQTLPSFLPPSSFPDAGTPLYLAPRKDGS-RHGARV 251
            + E  EE  V  K +   L       V  E  I+  LQH  ++  YG SL  T +    V L+ E C SNL+S++            +    S+  R +  +  A+ ++   G VHRDLK  NILLA ++T K+AD+  +   Q +   L       AGTP+Y+AP    S R+G++V
Sbjct:  739 KTETGEEINVAVKVYHEALNVQTAGLVSKEVDILRKLQHQYIVKFYGTSLLDTESSWTRVMLVMEHCKSNLKSYIFQNPDKVPANSKNPADRSETFRWATEITGALDYIHKEGFVHRDLKLENILLAENNTAKIADVGVSKGAQEITGTL-------AGTPVYMAPEVYHSRRYGSKV 909
[Close]
BLAST of NO24G00940 vs. NCBI_GenBank
Match: OGR17461.1 (hypothetical protein A2559_07155, partial [Deltaproteobacteria bacterium RIFOXYD2_FULL_66_9])

HSP 1 Score: 65.1 bits (157), Expect = 3.600e-7
Identity = 40/132 (30.30%), Postives = 67/132 (50.76%), Query Frame = 0 
Query:  115 LAEALIISGLQHPSVLPIYGISLAPTNTVYLLSELCVSNLESHVLSDICS-----PSDVARSSFALLQAVGFLLANGIVHRDLKHSNILLARDSTLKVADMRHALRVQTLPSFLPPSSFPDAGTPLYLAPRK 242
            LAEA ++  L HP+++ +Y +      TVY+  E     LE   L+D+       P ++A     + +A+G+  + G+VHRD+K  NIL+  D   K+ D   A R++     L   +    GTP Y++P +
Sbjct:   52 LAEARVLGRLDHPNIVRVYNVD-EDQGTVYIAMEF----LEGEALNDLAKRKRLPPGEIADLGAKIAEALGYAHSKGVVHRDVKPGNILVRSDGKPKITDFGIA-RIEDTAEHLRTQAGEVLGTPAYMSPEQ 177
The following BLAST results are available for this feature:
BLAST of NO24G00940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_022805450.18.500e-928.89uncharacterized protein LOC111342617 [Stylophora p... [more]
PFX33626.14.200e-830.57Dual specificity protein kinase shkA [Stylophora p... [more]
XP_022797833.14.200e-830.57uncharacterized protein LOC111336065 [Stylophora p... [more]
OYV99246.19.400e-831.82hypothetical protein B7Z62_01280 [Deltaproteobacte... [more]
OYV68062.11.200e-731.82hypothetical protein B7Z74_08800 [Deltaproteobacte... [more]
WP_009943029.11.600e-733.85serine/threonine protein kinase [Saccharopolyspora... [more]
OIP33385.11.600e-731.06hypothetical protein AUK27_10640 [Deltaproteobacte... [more]
OUX50289.11.600e-732.87protein kinase [Rhodopirellula sp. TMED283][more]
XP_022796287.11.600e-732.02uncharacterized protein LOC111334742 [Stylophora p... [more]
OGR17461.13.600e-730.30hypothetical protein A2559_07155, partial [Deltapr... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00940.1NO24G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|531369gene_7323Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00940.1NO24G00940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00940 ID=NO24G00940|Name=NO24G00940|organism=Nannochloropsis oceanica|type=gene|length=1054bp
ATGCGGATGAGGATGCCACTGCTTGTGGACCTCGGCTTGATCACCCTGTT
CTTCACCCTCTTCTTGGTGGTGGAGTTGAGGTCGGCTGTCACGGAGGAGG
ACGACACTGGACGGGTGACATTGACGCGCCTCTCAGAGATAGTTGGTAAG
GGTGTCTGGCCCGTGCACGTATTGGTGGTAGGCGTCGTGATGGAGGGAAG
GTGGGGGTGCGAGACGGTCGGCGAGCGAGCGGATGAGCGAGCAAAAGAGG
AGTTAGTGTCGGTGGTGGACAGGCGGGAGAGGGAAGAGGAGGAGGGGGTG
GTCGCAAAGACATGGACGAGGCTGCTGCGGGAGGCGCCGgtacgggctat
tctgatcaaccacgcagacgtttctctcggggagcccatcgcccgggggg
agggggcatggtccgcaagggcctgctctacggcaagtttgaggtagcga
ccgaaagcctgtacagccagttcatgatgggggagctcgacgatatggaa
aaggcggatagaaggaagggaggtgcattggttggcataaagggcattgg
aaacacaagacaagttagcaatactcttaggagatcacacccttttaccc
cttcatctcagatcctcaatccctagctcctgtaatccagGTTCTGGCTG
AAGCTCTTATTATCTCCGGCCTCCAGCACCCGAGCGTGCTACCCATCTAC
GGCATCTCTCTCGCACCCACAAACACGGTCTACCTTTTGAGCGAGCTATG
TGTCTCGAATCTCGAGTCCCACGTCCTCTCAGACATCTGCTCCCCCTCTG
ACGTCGCCCGCTCCTCCTTCGCCCTCCTTCAAGCCGTGGGCTTCCTGCTC
GCCAACGGCATTGTACACAGAGATCTGAAGCATTCCAATATCCTGCTTGC
AAGGGACAGCACCCTCAAGGTGGCAGATATGCGACACGCCCTACGCGTTC
AGACCCTTCCTTCCTTCCTCCCTCCCTCTTCTTTTCCAGATGCGGGAACC
CCGCTCTACCTGGCACCGCGGAAGGATGGGTCGCGGCACGGCGCCAGGGT
CTAG
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protein sequence of NO24G00940.1

>NO24G00940.1-protein ID=NO24G00940.1-protein|Name=NO24G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MRMRMPLLVDLGLITLFFTLFLVVELRSAVTEEDDTGRVTLTRLSEIVGK
GVWPVHVLVVGVVMEGRWGCETVGERADERAKEELVSVVDRREREEEEGV
VAKTWTRLLREAPVLAEALIISGLQHPSVLPIYGISLAPTNTVYLLSELC
VSNLESHVLSDICSPSDVARSSFALLQAVGFLLANGIVHRDLKHSNILLA
RDSTLKVADMRHALRVQTLPSFLPPSSFPDAGTPLYLAPRKDGSRHGARV
*
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Synonyms
Publications