NO24G00920, NO24G00920 (gene) Nannochloropsis oceanica

Overview
NameNO24G00920
Unique NameNO24G00920
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length512
Alignment locationchr24:253016..253527 +

Link to JBrowse

Properties
Property NameValue
DescriptionDNA damage inducible protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:253016..253527 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0016787hydrolase activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
Vocabulary: Biological Process
TermDefinition
GO:0019538protein metabolic process
Homology
[Close]
BLAST of NO24G00920 vs. NCBI_GenBank
Match: EWM21095.1 (DNA damage inducible protein [Nannochloropsis gaditana])

HSP 1 Score: 107.8 bits (268), Expect = 2.800e-20
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 0 
Query:    1 MATITITVADEQGNTVSLQVHVQDTVETLKALVEVEMHVPRAEQVLLKDGVPLSPGASLSACAVVDNDFLFLVRD 76
            MA IT+TVADE+GN  SLQV  QDTVE LKALVE+EM VP A+QVLLKDG PL+PGA L A  V DNDFLFLVRD
Sbjct:    1 MAAITLTVADEEGNAASLQVSTQDTVEALKALVEIEMCVPSAQQVLLKDGAPLAPGARLGALGVADNDFLFLVRD 75
[Close]
BLAST of NO24G00920 vs. NCBI_GenBank
Match: XP_005853568.1 (protein ddi1 2-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU22789.1 protein ddi1 2-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 100.5 bits (249), Expect = 4.500e-18
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = 0 
Query:    1 MATITITVADEQGNTVSLQVHVQDTVETLKALVEVEMHVPRAEQVLLKDGVPLSPGASLSACAVVDNDFLFLVRD 76
            MA IT+TVADE+GN  SL    QDTVE LKALVE+EM VP A+QVLLKDG PL+PGA L A  V DNDFLFLVRD
Sbjct:    1 MAAITLTVADEEGNAASL----QDTVEALKALVEIEMRVPSAQQVLLKDGAPLAPGARLGALGVADNDFLFLVRD 71
The following BLAST results are available for this feature:
BLAST of NO24G00920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM21095.12.800e-2074.67DNA damage inducible protein [Nannochloropsis gadi... [more]
XP_005853568.14.500e-1872.00protein ddi1 2-like protein, partial [Nannochlorop... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004855NSK004855Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00920.1NO24G00920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|130759gene_7321Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100776g1gene9330Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00920.1NO24G00920.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00920 ID=NO24G00920|Name=NO24G00920|organism=Nannochloropsis oceanica|type=gene|length=512bp
ATGGCTACCATTACTATCACCGTCGCGGACGAGCAAGGGAACACCGTCTC
GCTCCAGgtaagagactccctttctcctcccccaagtgaaggcaatttaa
aaaaggttatgaccccacactctggtccaagGTGCACGTGCAAGACACGG
TCGAGACCCTGAAAGCCCTGGTGGAGGTCGAGATGCACGTTCCCCGCGCA
GAGCAAGTGTTGCTGAAAGACGGAGTGCCTCTTTCCCCGGGAGCCTCGCT
TTCAGCTTGTGCCGTGGTTGACAACGATTTCCTCTTCCTCGTGCGGGATC
AAGGCAATAGCAGCAGCGCCAGCAGCAGCACCACCACCAGCACCACCACC
AGCACTAGGACCAGCACCAGCAATGTGATTAGCAGCGGAAGCAGAACCAG
CACCACCGCGGCGGCAACGACCTCGGTTTCCACTGCGACTGTGGGAGGCG
GTGCGGGCCTGTTGCGCTCCCTGAACGACCTTCCCCCGGCCTTGGTCCCG
AGCAGTTCATGA
back to top

protein sequence of NO24G00920.1

>NO24G00920.1-protein ID=NO24G00920.1-protein|Name=NO24G00920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=146bp
MATITITVADEQGNTVSLQVHVQDTVETLKALVEVEMHVPRAEQVLLKDG
VPLSPGASLSACAVVDNDFLFLVRDQGNSSSASSSTTTSTTTSTRTSTSN
VISSGSRTSTTAAATTSVSTATVGGGAGLLRSLNDLPPALVPSSS*
back to top
Synonyms
Publications