NO24G00910, NO24G00910 (gene) Nannochloropsis oceanica

Overview
NameNO24G00910
Unique NameNO24G00910
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2218
Alignment locationchr24:250611..252828 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:250611..252828 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G00910 vs. NCBI_GenBank
Match: EWM21094.1 (hypothetical protein Naga_100776g2 [Nannochloropsis gaditana])

HSP 1 Score: 69.7 bits (169), Expect = 1.600e-8
Identity = 39/74 (52.70%), Postives = 45/74 (60.81%), Query Frame = 0 
Query:   21 EEAITIQGRHSSLAEFLVRQPAEEVTAFFTDIVELLERRGI----------------------ENYHLVLKTVE 73
            EEAITI+GRH SLA+FLV  PAEEVT++FT+IV +LE RGI                      ENYHLVLK  E
Sbjct:   39 EEAITIEGRHESLADFLVHHPAEEVTSYFTEIVAMLEHRGIAAGKACERRFFFPSHSPPPPRLENYHLVLKHAE 112
The following BLAST results are available for this feature:
BLAST of NO24G00910 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21094.11.600e-852.70hypothetical protein Naga_100776g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL040nonsL040Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR027ngnoR027Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004853NSK004853Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00910.1NO24G00910.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100776g2gene9329Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00910.1NO24G00910.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00910 ID=NO24G00910|Name=NO24G00910|organism=Nannochloropsis oceanica|type=gene|length=2218bp
GATGCGTCGAATGTGCGTAAACGTGTGACTGGGTTCGTAGAAGTTGAACG
CAAGGTCAAGAAGAGAAGCAGATTATGATGCAAGGGGCATTTTTTTCCAC
AAAACATTTGAAAACCACACTGTAAACATACCCCAAGCCACAGTCAGCTC
CACATGTACCTTTCAGCGTTCTAGATAATCTGGCCAGGACTTTAAGTGGG
CGAACGCCAAGTGCCTTGCTCTTATCCTCGCCCCGCGTACCCCCATCATC
CTCAATCACCGTGTCTTGGTGGAGAGCGTCTTCATAAGCCCACTGCCCTC
AGGCACAAACATCTCTTCGCATACCTTACGACGACCATGACGAGGCGCCT
ATCAATCACCGACACGCAAGTGTGGGACCGCTTCGAACGGTGCTATGgta
agcgaatgctacaacacagcaacgctcagaacttgtagacagcatatcgc
ttgctatgctggtcaaggaagcttgaacgcccaccccgagcgcggagctg
aacctagaattctcccaagaaagcaggaagctagttctttattacagcca
catctccgtgacctttacctgccggaccgtgttctgcaccaagcaaacat
tccctgtttttcaacactcccttccccccccgtcaaaccaatcccttgcg
cagAGGAAGCTATCACAATCCAAGGCCGGCACAGCTCTTTGGCAGAGTTT
CTGGTTCGGCAGCCCGCGGAGGAAGTGACTGCATTCTTCACTGACATCGT
CGAGTTGCTTGAACGCCGAGGGATCGgtaattagactcttgctttgggag
ggaggaaatgcatgatgcgtgagagatggggattcgagaccgcgaggctt
gatgtagcattggagggcagcgaaacgtttgtgaacgaccccctcttctc
ccttccactctctttccttcttttgtccctttcctcctcctcttccttgc
cccagAGAACTACCACCTCGTGCTCAAAACCGTGGAGGCGTCAGTATCCC
CGCGGGAGCTCCACCGGCAGCCGCAGCGGAAGGAGCAACGACGAGAGGAC
TCACATCGCAGCAGCACTATTAGTAGCATTAACAGCCACACTGGGGGCCA
CGGAGGAGTGAGAGATCAGAGGGAAGAACACCGGGGCCGAGGCCGAAGAC
GATATAATGACACTAGGGACGGGAGTGGCGGCGGCCGTCACCACCGGCAT
CACTTTGAGGATAGGGGGGACAAGGATGACTACTACCGGCGCCGGCTAAG
GGATGCGAAGTGGGAGAATAACCGACGGCGTAGACGGGAGGAAGAAGAGG
AGTGCGAAAGGAGGGAGCAGGATGGAGGCCAAGGACGACAGCGCCGCTGC
AGCCGGAGCCGGAGCCGCAGTGGGGGTGCAAGCCGGGACCGAAGGGGGAA
GAGAGGGGGGCGAGAAAGCGGTGGATGTGGAAAAGCCAGAAGGGGGCGTG
GCGGAAAAAGCAGCATTAGCAGGCGTGGCAAGATGCAAGGACGCTCTCGT
TCGCGCTCCAGCTCATCCCGCTCATCATTCTCATCTTACAGCTCTCCCTC
TTCTTCCTCCCCCCCCGCCCCCGCCCTCTAGCTAGCCCCGCCTCTACCTC
TGGAGCGGCGGACAAGACGCAATGGTCGGTCGTGATTTATCATGGTGGTG
AGGCGCGCAAGGACTTTTCAGGTCCGCTGGCGGCGTCGAGTTGCATGTCG
TGCGACCTGGACACGAGCATGCAGATGGGGCTGACTGGCGATGGGGATGG
CGGGCTGCCGGCCGAGGCCTCGCTAATCTACGAAGATGCCCACATGCGGT
ATTGGCACGACGCAAAGGGCCGGCCACTATTTGTTGTGACCCCACAACGC
CATGTGCACAACCTCAAGGAGCTTACGGCCGCCGAGATGCACCGACTCTG
GAGCGGCGCCGTGCAGATCCTGACCGACATGGGCTGCGACCCCAAGGAGG
ACATGCGCGACATGATACTCAACGCTGGCCTCGACCGCAACCACGCCCAT
CTCCATCTCAAAGTGCGCGTCACGGGCCGGGGTTTCGACCGAGCCCGGGC
CAAGTGGAGCCAGCGCCGGAACCGGCTGGTGGATGCTTTAAAAGCCTTTG
CTCGCAAGCAGGACTGCTGAAAGCGCGGAGGAGATGAAGCCGCTGTAAAC
CAAGAGAGAAGATATTTCGACGATATACCATGTGCTAACGAAGAAATAAT
GAAATACTTTTTAGACGA
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protein sequence of NO24G00910.1

>NO24G00910.1-protein ID=NO24G00910.1-protein|Name=NO24G00910.1|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MTRRLSITDTQVWDRFERCYEEAITIQGRHSSLAEFLVRQPAEEVTAFFT
DIVELLERRGIENYHLVLKTVEASVSPRELHRQPQRKEQRREDSHRSSTI
SSINSHTGGHGGVRDQREEHRGRGRRRYNDTRDGSGGGRHHRHHFEDRGD
KDDYYRRRLRDAKWENNRRRRREEEEECERREQDGGQGRQRRCSRSRSRS
GGASRDRRGKRGGRESGGCGKARRGRGGKSSISRRGKMQGRSRSRSSSSR
SSFSSYSSPSSSSPPAPAL*
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Synonyms
Publications