NO24G00880, NO24G00880 (gene) Nannochloropsis oceanica

Overview
NameNO24G00880
Unique NameNO24G00880
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4846
Alignment locationchr24:242003..246848 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:242003..246848 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G00880 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00880.1NO24G00880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00880.1NO24G00880.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00880 ID=NO24G00880|Name=NO24G00880|organism=Nannochloropsis oceanica|type=gene|length=4846bp
ATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCTCGGCCAGT
GCAGCAGCGGCTGACAGGAAACGGAGAAGAGAGAGTGAAGGAAAAGGAGG
AGGAGGAAGGAGAAGAAGAAGAGGAACTATCGCGACTGGTCATACCTTCA
TTTGCCTCGTCATCATCCTTTCCTCTGCCTCACTCTCCAGCCCAGTTTGT
CACTACCAGTAAATCGGACGAGGATGTGGAGGAGATACGGCAGTGGGAGG
ACGAACGCAAAGGATCACAGCCCACCTCTCTGTCCCTGACCCCATCCGCT
GCTTTCTCCTCTCGACCCTCCCCGTCCTCTCCGCCCTCCTTTTCCTCTCC
CTCCTCCCCGGCCTCCATTTTCCTCGAGGACGGACATGCCGGAGAGAGTG
GAGAAGTGACTTCGACGCCCAATAAGACGCCCGCCACAGCATCAGCAGCA
GCGGTGGTGCCTTCACCACCAGTTGCAGTAGCGGTAGCAGCCCCTGCTCC
CCCAGCAGCAGCGGTTGATGTACAGGGGACTGCCGTCCCTAAGGGCAGAG
AGAAAAAGGAGGTTTTGGTACGTCCCACCACAGCTCCCTCCCTCACTTTT
TCCGCTTCCTTCTCCTCCACCTTCTCGTGTCGTTCCTCTCCGTCCAGCTC
TGCTGCCAGCGCCAAGCGAAATGGTCGTCCTCGACGCGTAGCGTTGGTGG
AGGAGGGGGAAGTAGGGAAGGCGGGAGGGGAGGAGTGGCTACCGACGAGT
AGGAATGGTGCCCTCGGCCGATACCTCGCCACGCCTCCACCCTTTCTTTC
CTCCCTCCCTCTTACGGATAGGAAGAAAAAGGAGAAAATCTCGAAAAAGA
AAAAGAAAAAAGAGAGAGGGCAGGAGGGAGAGGGAGAAGGGTTGGGAAAC
CGGATGGAGATGATGCGACAGGAGTTGGCAGCTCTGGAGGCGAGGCTGGC
CTTGGCGAGGCAAGAGATCAGCCGGGTGGAAGAGAGGAAAATGGTCGTGT
TGGGGGAGGCTAGAGGCGGTGGGAGGGAGGGGAAGGGCAAGAAGCAGGTG
AAGGTAATGGCAGGGAAAGCCTTGGCGACGGCGGTGGGGACAGACGGAGA
CGTAAAGGAAGACGTAGAGGAAGACGTAGAGGAAGAGGAGGAGACAATTG
CCGGTCGCTTTCGAAAGCATCAGCATCAAGAGCATCAAGAGCATCAAGAG
CACCAACGACCTTCGGTTGCTTCCAAAAGCCCCTTGCCCTCGGTGCTGGT
CGTGCCTAAGGGGGATGAACAAAACTACAAGAACGACAGCAACGCCTCAC
GTAGCTCCTCCCAGTCTAATTCCGAGCACAAAGGACGCTCCTCCTCCTCC
TCCTCCTCCTCTTTCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCTTTCTCCTCCTCCTCCTCCCTCCGCCGTTTCCTGT
CCCCGCACGACCTGGACTCCATTCGCGCATTCCTTGTGGAACAGCATGTC
TTCGGAAGTCCATCCCGCAGCGCCAGTCTCAGCATGAGCTTGCCCACTCC
CTATTCCTCGCCCTCCTCACCTACCTCCCTCTCCGCCTGCTTCGAGATAG
ACCCCCACCGGTCGATCGTCCAGAGCCTGGCCTTGTCTCACCCGGAGAAA
CTCCTCCATCTCTACAAGgtccttattgctttccatgtctagcatccttt
tccttcatgtcaaccttccctttcaggctccagccatgcgaatcacgctt
ctcccaccttcctcccacacattaaataaccagGAAAATTGCCTCGTGGA
TGCCAGGCGTCGATCCGGACGGCTTCAAGACATCCTGGGACGCGAGACAC
CCCTCATTCTAGCCGTCACGGACCAGCACCTGTACATGCTTGACCCATCT
TTCACTGCCCCCCATCCTAGCGGCCATCTCAAGCACTTTTCCGAGGCACC
GCTGCCAGTGCTGCTGGGTCGGTGGCCGCTGCGGGCTTTAAAAAGGGTTG
TGGTGGGCTTCAGAGCGCAATGGGGGAGGTTGGAGTTTGAGATGGAAGGG
GGGAGGAGGGGGGTTGCGGTCGTGACATTTCCTCCTGGCAAGACCGAGAT
GAGGAAGGACGGGAGGGCGGGTGTGTGCTCTTGAGGCAGGCGAGGAGGGA
GGAAGACCCCATCGTGCAAGTCGGCTGCACGCTCGTGACGCGGGACAAGG
CGCAGACCTTCCGGCTCCTGAACGGCGACCTCCGACCACTGGCGAATGAG
GCCCGGCGTCGGGGAGGCTGCGGAGGGGAGTGTGCGGGGGAGGACAGGGG
GCAGAAGCAAAGGCAGAAAGTGGAGGTGGCGAACACGGAGGAGGCTTGGA
TAGAGACACTGCTGACGGCAGGAGTGGGCGTGGAAGGCGGGCTGCGCTAC
CACGCGATGCTTTTCCAGTGGTTCAAAAAGAGCTCGGGCCTGGGGCTGCC
GCTCTTGCCACGCACGGTCATGGTCACGGAGGAGGGCGAGTTCGTGGTTG
CAGTCGAGGACCTGCGGCAGGACGTCTCCTTGCAGCCACCTCCTCCTGCT
GCTGCTGCTGCTGCGGCAGGATACAAAGGGTCCATCAAGAGCGTTGGGCA
TGAGCACCTCCGGCAGCAGTCGCAGAGGCAGCTGGGGAAGTATAGTCCGA
TGCCGGCGGCGGGAAGGCGCCTGAGTGTGCTACTCCGCGTGCCACTTAGC
CAAGTGCTGGACGTGAGCGAGGAGGCGACGGACCCGCGGCATATAACTGT
GACGGTGCAAGGAGGGGTAAGAGGGGAAGGGGGTTATGGGGAAGGTTGTC
GTCGTTGCCCTTCATAGACACGCACACCTGGCGCCTGTACTCTGAGGATC
GCCGACATATCGACGTCTTGGCCAAGCTCTTGCTCGACCGGGGGTAAGAA
GAGATGTGAGAAGAAGAGAAGAAAAGATGAGGGACGTCCTTGAGAAGTTT
TATGTGGAGGATGGTTTAACGGAAGGGTCACGGGGCTTGGCGGGATGAAG
AGAGGCTCGAGGGGGGCGTGAGGAGCCTTGAAGGGATAGGGTGTGAGAGA
GAGGGCGAATAGGTAGGCATGCATGATGGTGAGAGTTGTCGAGGTTAAGG
TGTGTAATAGAGTGTACATAGTCCATGCCTGCGACTGGGCAGCAGCAAAG
AGAGAAGAAGAAATGAAAATAGACGACGAAGAAGAGGAAAGCTCCTGCGG
CCGATTTGTGCAATGTGAAGGCGATTGCTTGCTGCTTTACTTTCCACATT
CCTCTGGTGCTCGCTTCTCAAGCCACCTTGTGCCGCTCCCCCAGGACTGC
GCCACCCACCTTCCGTACCCACCTCCCCTCCTCCTCCTCCTCCTCCACCA
GCACCACCACCAAGCCCCACACGAAGTACAACTCAATCGCGAGTGATAAG
ATGCGTCCCGCTACGAGCACTGACCCCAATCCCCAAACAACTTTTGCGCC
TAATCCCCCATCTTGCCCCCATCTGTCCCCTCTTCCCTCCATTTGTAAAC
CGGTGATTCCCATGTGGCCAAGCGCGGGGACTGCATGGAGGAGCAAGGGG
TAGAGGGGGCGAGAAACAGGCTGCCAATGCCCCACATCCCAAGCGCATTC
CGGAAGTTGTTCGAGAAGAAATATTGCACCAGGCGTGGATCTGCATCCCG
TAGCATTTTCCAGTGTCGGCCGTCCTCCCGCTGCACTACCAGTTGCGTTG
CCAAGAGTGTGGCCCACTCAACAGAGAGGCAAAGCAGAGCAGGGAGAGCC
AGGCGGGCGTCAAGCAGTGCCGACGATACCCACATACAGCTCCTCAGAAC
GTTGTCAGCGAAAATGTCAAGCATCGCACCTAGCTGAGATGTCTGATTCA
GGCGCCTAGCTACATATCCATCCAAGGAATCTAAGGCGACATTGATAACA
AACACCAGCAGAGCCGCCAGCAAGTCCGGTTCAGCGCTCCGCAGGAAAGC
CGTCCCATTGCTGTTATTGGCCTTCTGCCGGTTACCATCATCTACAAGGG
CGGCGGAAAGATGGTCCAACCCCTTACCTAGGAGAGTGTTGGCGGCATGC
GGTAACAAGCCCGTATTGCTGACTTGCGTGGCGTAAAAGGTGGCAGTCTG
CATCATGGCCTGCACCGAGCAAGATGACCCGCCGTCGTGTGCTGCATGCC
GGGCATCTTCCTGTTGCCGCGTCACCGTGTGGGCAACGATAGACAGGCCG
TAAAAGCTAAGTACCAGTCGACTGTAGCAAATTAAATTGGGGATGTATAA
CAGCACGGGGAGCCGGGTAGACGCGGGCCGTAGGTGCTGAGGGCTGTCAG
CCATCTTTTAAAGCGGCGGAGTTCTCAGAGGCGCGCTGTCGGCCTACGTC
CCTATGAAGAAGCCAATGTGGGTCTGAAAGTTCAACGCGATGGGCGTGTG
GGAGTGTCCAGCGGGTGGGCAACAACTCGAATGTCGGCGAGGACTTGAAG
CCTGACGGGTGCGTTGTTGGAGACGGCCATGATAGGTTGCCCTGTTGGTG
AAAACAGGATTGACGATGCATAATTGTAGGTGTTTGATCTGCAATATCCC
AAACCTTCTCAGGAGGAAGTGAAGGATGGAACGAGAAGGTGAGAGGAAAG
AGGGAAGTGAATAAGACCCACAGAACTCAAGAAGGCATGTTTACACTGCG
CCGTCAGTTGCCGCGCAATCGGAGCCGCGAAAACATGGCCTCATTTCCGG
CCGCAAACCTCCCCCTTCCCCCGCGTGTTCAGTCAGGCCGCGAACGCTTC
CCACGGCTTTGATCATGGCATCTTGTCTTGAAGGTTTATCAGTAGATGGG
ACCAACACTTACCAAGAAATTGATTTTCTTTGCCTAACCCTTCTCA
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protein sequence of NO24G00880.1

>NO24G00880.1-protein ID=NO24G00880.1-protein|Name=NO24G00880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=673bp
MEEEEEEEEEEEEARPVQQRLTGNGEERVKEKEEEEGEEEEELSRLVIPS
FASSSSFPLPHSPAQFVTTSKSDEDVEEIRQWEDERKGSQPTSLSLTPSA
AFSSRPSPSSPPSFSSPSSPASIFLEDGHAGESGEVTSTPNKTPATASAA
AVVPSPPVAVAVAAPAPPAAAVDVQGTAVPKGREKKEVLVRPTTAPSLTF
SASFSSTFSCRSSPSSSAASAKRNGRPRRVALVEEGEVGKAGGEEWLPTS
RNGALGRYLATPPPFLSSLPLTDRKKKEKISKKKKKKERGQEGEGEGLGN
RMEMMRQELAALEARLALARQEISRVEERKMVVLGEARGGGREGKGKKQV
KVMAGKALATAVGTDGDVKEDVEEDVEEEEETIAGRFRKHQHQEHQEHQE
HQRPSVASKSPLPSVLVVPKGDEQNYKNDSNASRSSSQSNSEHKGRSSSS
SSSSFSSSSSSSSSSSSSSSSSFSSSSSLRRFLSPHDLDSIRAFLVEQHV
FGSPSRSASLSMSLPTPYSSPSSPTSLSACFEIDPHRSIVQSLALSHPEK
LLHLYKENCLVDARRRSGRLQDILGRETPLILAVTDQHLYMLDPSFTAPH
PSGHLKHFSEAPLPVLLGRWPLRALKRVVVGFRAQWGRLEFEMEGGRRGV
AVVTFPPGKTEMRKDGRAGVCS*
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Synonyms
Publications