NO24G00870, NO24G00870 (gene) Nannochloropsis oceanica

Overview
NameNO24G00870
Unique NameNO24G00870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1416
Alignment locationchr24:240541..241956 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:240541..241956 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO24G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004849NSK004849Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00870.1NO24G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672651gene_7317Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00870.1NO24G00870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00870 ID=NO24G00870|Name=NO24G00870|organism=Nannochloropsis oceanica|type=gene|length=1416bp
ATGGCCATGCCGCAGCTATGCAAGACCTTTGGATGCTTTCCGAGAAAAGA
GCGGAAGGACAATGAGCAGGATGAGGGGCAGAGTGGCTTGCGGCGACGAT
GGACACAACGCCGGAAGCGTCTTCAACAACGTCCGCCTGAAGAATGGCTA
ATGCGCCTGGCCCGCGACGTCGAAGTAGTACAGCAAGGCAGCAATCCGCG
GCAGCAGCAGCAGCAGCACCACCAGCAGCAGCTCCCTTGGGTGCTGAGCA
CGGAAATGCTGGCATTCCTCATGCAGCACCTCTCAAAACCTATGCCACAT
CTCACAACACCGGCGACACGGAGTCGAAGCAGCAGCAACAGGAGCAGCGA
CAACAAAAAGGACACGCTTGTCGCGCAGACTTTGCTGCGCTTCCTGGCTT
CCATCACCACCCTCCATCTCGTGGAGCAGGATCAACATTACAGCCACCCT
TGTGGTTGCCTCCAATCCTCCCTCTGGCCCGCCCTCATTACGCTGGAACT
AACGGGTGTCACCCCCTCCGCCCTGGCGCCGGCCCTCCCCGCCCTCCGTC
CCACCCTGCAAACCCTGCACTTGGAGCGAGTCGCGCTCTGTGGATTGGAC
GAGTTGCTCTTGTCACCTTTTTCCTCATCATCATCTAATACAAGCAACAC
CTCCAATAGGGGAGGAGGAGGAGACGAAGAAGAATGCCGTAAACCTAGTC
AGTGGAGGTCTTTACGGCGCCTGGTCTTGAGCCACTGCGATCTAGGGCAC
TTGCACCCGGCATCAGCCTTGACCCATTCCTGCCCGCACTTGACTCGACT
AGAGCTACCGCACAATCGACTCGTCTCCATAGCAGGGCTGCTGCGGGTTT
GGAAGGATCAGGGAAAGAAAAAAGAAGGAGGGGCAGCATCGGAATGCGAT
GCGGATAGAGGGAGCGGTGGGAGTGAGCTCCTCCCTAGGCTGTCCCTTCT
GGACCTCCGCCACAATGCCCTCCAGTCTGTCGCATGTCTTTCCTCTTTCC
ATTCCTCCGTCCATCCCATCGTCGCTCACCTTCAGGAGCTCCGCCTCGGT
CACAACAAGCTCCGCACCACACAGGGACTCGAGGCTACGTCCCTCCCCTC
CCTTCACACCCTGGATCTGAGCCACAATCCGCTTGCGCGCTGGTCTGAGG
TAGAGCGGCTGGACGAGGACAGGAAGGCGGGCGATGCGCGCAGGGAGGGA
GTAGGGGAGGGGGTGGTGCGGGTATTGGAGGCGCTGCGGTTGGCGGGCAC
TCCCTTGTCGCGCCTTGGGGGCTACCGCGTCAAGGTGCTGGCCTTGCTCA
GGCGGGGAGGGGGGGGGCATCTTGGACGGGCTGCCTCCCTCCCAGGAGGA
GACTCGAGAGCTGCAGCGGCGTCTGACATGCGCGGCGGTCTCACCCCTTT
CCTCTGCTCTTCCTAA
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protein sequence of NO24G00870.1

>NO24G00870.1-protein ID=NO24G00870.1-protein|Name=NO24G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MAMPQLCKTFGCFPRKERKDNEQDEGQSGLRRRWTQRRKRLQQRPPEEWL
MRLARDVEVVQQGSNPRQQQQQHHQQQLPWVLSTEMLAFLMQHLSKPMPH
LTTPATRSRSSSNRSSDNKKDTLVAQTLLRFLASITTLHLVEQDQHYSHP
CGCLQSSLWPALITLELTGVTPSALAPALPALRPTLQTLHLERVALCGLD
ELLLSPFSSSSSNTSNTSNRGGGGDEEECRKPSQWRSLRRLVLSHCDLGH
LHPASALTHSCPHLTRLELPHNRLVSIAGLLRVWKDQGKKKEGGAASECD
ADRGSGGSELLPRLSLLDLRHNALQSVACLSSFHSSVHPIVAHLQELRLG
HNKLRTTQGLEATSLPSLHTLDLSHNPLARWSEVERLDEDRKAGDARREG
VGEGVVRVLEALRLAGTPLSRLGGYRVKVLALLRRGGGGHLGRAASLPGG
DSRAAAASDMRGGLTPFLCSS*
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Synonyms
Publications