NO24G00850, NO24G00850 (gene) Nannochloropsis oceanica

Overview
NameNO24G00850
Unique NameNO24G00850
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2521
Alignment locationchr24:237704..240224 +

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Properties
Property NameValue
DescriptionProteasome assembly chaperone 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:237704..240224 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018788Proteasome_assmbl_chp_3
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Homology
BLAST of NO24G00850 vs. NCBI_GenBank
Match: EWM21125.1 (Proteasome assembly chaperone 3 [Nannochloropsis gaditana])

HSP 1 Score: 188.7 bits (478), Expect = 1.000e-44
Identity = 92/112 (82.14%), Postives = 103/112 (91.96%), Query Frame = 0
Query:    6 YNETKEINGIPTDVTIINYSDRVFLVISQNSRFGTLISAKADDSLTQPGAAPSFDVNVLLGRRDDPLLLIYARQLVEAISKSSSRPLLLSISLRERDPGTFEKVMEWVRPLL 118
            Y+ETKEING+ TDV I N+SDR+FL ISQN+RFGTLISAKADDS+ +PGAAPSFDV+VLLGRRDDPLLLIYARQLVE +S+SSSRPLLLSISLRERDP TFE+V  WVRPLL
Sbjct:   74 YHETKEINGVLTDVAIFNFSDRIFLTISQNARFGTLISAKADDSVARPGAAPSFDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRERDPSTFEQVAAWVRPLL 185          
BLAST of NO24G00850 vs. NCBI_GenBank
Match: XP_009526780.1 (hypothetical protein PHYSODRAFT_351247 [Phytophthora sojae] >EGZ17722.1 hypothetical protein PHYSODRAFT_351247 [Phytophthora sojae])

HSP 1 Score: 100.5 bits (249), Expect = 3.600e-18
Identity = 53/112 (47.32%), Postives = 73/112 (65.18%), Query Frame = 0
Query:    8 ETKEINGIPTDVTIINYSDRVFLVISQNSRFGTLISAKADDSLT---QPGAAPSFDVNVLLGRRDDPLLLIYARQLVEAISKSSSRPLLLSISLRERDPGTFEKVMEWVRPL 117
            E KEING+PTD+ +  ++DRVF+V +Q   FGTL+ A   DS++   QP      D++V LGRRDDPLLL+YARQ +E        P+L +I L++R   TFE VM+ V+ L
Sbjct:   15 ERKEINGVPTDIAVSIFADRVFIVATQLGTFGTLVEAHQKDSISGKLQP------DIHVRLGRRDDPLLLVYARQFLEHFGVPVGLPILAAIGLKDRSSDTFEVVMQSVKEL 120          
BLAST of NO24G00850 vs. NCBI_GenBank
Match: XP_002899495.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY61855.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 100.1 bits (248), Expect = 4.700e-18
Identity = 50/112 (44.64%), Postives = 74/112 (66.07%), Query Frame = 0
Query:    8 ETKEINGIPTDVTIINYSDRVFLVISQNSRFGTLISAKADDSLT---QPGAAPSFDVNVLLGRRDDPLLLIYARQLVEAISKSSSRPLLLSISLRERDPGTFEKVMEWVRPL 117
            + K+ING+PTD+ +  ++DRVF+ ++Q   FGTL+ A   DS++   QP      D+++ LGRRDDPLLL+YARQ +E        P+L +I L++R  GTFE VM+ V+ L
Sbjct:   15 DRKDINGVPTDIAVSIFADRVFIAVTQLGTFGTLVEAYQKDSISGKFQP------DIHIRLGRRDDPLLLVYARQFLEHFGIPVGLPILAAIGLKDRSSGTFEAVMQSVKEL 120          
BLAST of NO24G00850 vs. NCBI_GenBank
Match: OWZ02976.1 (hypothetical protein PHMEG_00025369 [Phytophthora megakarya])

HSP 1 Score: 98.6 bits (244), Expect = 1.400e-17
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 0
Query:    8 ETKEINGIPTDVTIINYSDRVFLVISQNSRFGTLISAKADDSLT---QPGAAPSFDVNVLLGRRDDPLLLIYARQLVEAISKSSSRPLLLSISLRERDPGTFEKVMEWVRPL 117
            + KEING+PTD+ +  ++DRVF+ ++Q   FGTL+ A   DS++   QP      D++V LGRRDDPLLL+YARQ +E        P+L +I L++R   TFE VM+ V+ L
Sbjct:   16 DRKEINGVPTDIAVSIFADRVFIAVTQLGTFGTLVEACQKDSISGKLQP------DIHVRLGRRDDPLLLVYARQFLEHFGVPLGLPILAAIGLKDRSSDTFEVVMQSVKEL 121          
BLAST of NO24G00850 vs. NCBI_GenBank
Match: ETI51540.1 (hypothetical protein F443_05131 [Phytophthora parasitica P1569] >ETK91439.1 hypothetical protein L915_04993 [Phytophthora parasitica] >ETL44849.1 hypothetical protein L916_04941 [Phytophthora parasitica] >ETP21328.1 hypothetical protein F441_05131 [Phytophthora parasitica CJ01A1] >ETP49254.1 hypothetical protein F442_05189 [Phytophthora parasitica P10297] >KUF87750.1 Proteasome assembly chaperone 3 [Phytophthora nicotianae])

HSP 1 Score: 97.4 bits (241), Expect = 3.100e-17
Identity = 50/112 (44.64%), Postives = 73/112 (65.18%), Query Frame = 0
Query:    8 ETKEINGIPTDVTIINYSDRVFLVISQNSRFGTLISAKADDSLT---QPGAAPSFDVNVLLGRRDDPLLLIYARQLVEAISKSSSRPLLLSISLRERDPGTFEKVMEWVRPL 117
            + K+ING+ TD+ +  ++DRVF+ ++Q   FGTL+ A   DS++   QP      D++V LGRRDDPLLL+YARQ +E        P+L +I L++R  GTFE VM+ V+ L
Sbjct:   15 DRKDINGVSTDIAVSIFADRVFIAVTQLGTFGTLVEAHQKDSISGKFQP------DIHVRLGRRDDPLLLVYARQFLEHFGIPVGLPILAAIGLKDRSSGTFEVVMQSVKEL 120          
BLAST of NO24G00850 vs. NCBI_GenBank
Match: XP_008902512.1 (hypothetical protein PPTG_09334 [Phytophthora parasitica INRA-310] >ETL98004.1 hypothetical protein L917_04840 [Phytophthora parasitica] >ETM51165.1 hypothetical protein L914_04948 [Phytophthora parasitica] >ETN12554.1 hypothetical protein PPTG_09334 [Phytophthora parasitica INRA-310] >ETO80301.1 hypothetical protein F444_05168 [Phytophthora parasitica P1976])

HSP 1 Score: 96.3 bits (238), Expect = 6.800e-17
Identity = 50/112 (44.64%), Postives = 72/112 (64.29%), Query Frame = 0
Query:    8 ETKEINGIPTDVTIINYSDRVFLVISQNSRFGTLISAKADDSLT---QPGAAPSFDVNVLLGRRDDPLLLIYARQLVEAISKSSSRPLLLSISLRERDPGTFEKVMEWVRPL 117
            + K+ING+ TD+ +  + DRVF+ ++Q   FGTL+ A   DS++   QP      D++V LGRRDDPLLL+YARQ +E        P+L +I L++R  GTFE VM+ V+ L
Sbjct:   15 DRKDINGVSTDIAVSIFVDRVFIAVTQLGTFGTLVEAHQKDSISGKFQP------DIHVRLGRRDDPLLLVYARQFLEHFGIPVGLPILAAIGLKDRSSGTFEVVMQSVKEL 120          
BLAST of NO24G00850 vs. NCBI_GenBank
Match: XP_024577762.1 (Uncharacterized conserved protein [Plasmopara halstedii] >CEG41393.1 Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 94.0 bits (232), Expect = 3.400e-16
Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 0
Query:   10 KEINGIPTDVTIINYSDRVFLVISQNSRFGTLISAKADDSLTQPGAAPSFDVNVLLGRRDDPLLLIYARQLVEAISKSSSRPLLLSISLRERDPGTFEKVMEWVRPL 117
            K ING+PTD  +  ++DRVF+ ++Q   FGTL+ A   D+++  G   S D++V LGRRDDPLLL+YARQL+E        P+L++I L++R   TFE VM+ V+ L
Sbjct:   17 KIINGLPTDFAVSIFADRVFIAVTQLGTFGTLLEAYQKDTIS--GKLQS-DIHVRLGRRDDPLLLVYARQLLEHFGVPVGLPVLVAIGLKDRSSQTFEVVMKCVKEL 120          
BLAST of NO24G00850 vs. NCBI_GenBank
Match: CCA19592.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 89.4 bits (220), Expect = 8.300e-15
Identity = 44/112 (39.29%), Postives = 75/112 (66.96%), Query Frame = 0
Query:    6 YNETKEINGIPTDVTIINYSDRVFLVISQNSRFGTLISAKADDSLTQPGAAPSFDVNVLLGRRDDPLLLIYARQLVEAISKSSSRPLLLSISLRERDPGTFEKVMEWVRPLL 118
            ++  +EING  T+++I  +S+++F+++SQ   FGT++ A+  DSL++   +   +V + LGRRDDPLLL+YARQ +E I      P++ +I L++R   TFE+VM  +  L+
Sbjct:   19 FSAYEEINGHATNLSISIFSNQLFIIVSQIDTFGTVVQARKRDSLSENFQS---EVQIRLGRRDDPLLLVYARQFLERIGSPLGLPIVAAIGLKDRSSDTFERVMNQLLALI 127          
BLAST of NO24G00850 vs. NCBI_GenBank
Match: KYR01656.1 (proteasome assembly chaperone 3 [Tieghemostelium lacteum])

HSP 1 Score: 87.8 bits (216), Expect = 2.400e-14
Identity = 45/105 (42.86%), Postives = 68/105 (64.76%), Query Frame = 0
Query:    7 NETKEINGIPTDVTIINYSDRVFLVISQNSRFGTLISAKADDSLTQPGAAPSFDVNVLLGRRDDPLLLIYARQLVEAISKSSSRPLLLSISLRERDPGTFEKVME 112
            N +K IN I TD+ I ++S+++F+ ISQN +F T I     +S       P + V  LLG   D LL+IYARQL+E I +SS++ LLLSIS++++   TF+ +M+
Sbjct:   34 NISKLINNIQTDIVISSFSNQIFITISQNQKFNTWIQGYKQESTFSD--EPCYTVETLLGNNQDQLLMIYARQLIENIGQSSNKTLLLSISIQDKSKDTFKIIMQ 136          
BLAST of NO24G00850 vs. NCBI_GenBank
Match: GAY02598.1 (Hypothetical protein PINS_010430 [Pythium insidiosum])

HSP 1 Score: 87.4 bits (215), Expect = 3.200e-14
Identity = 44/107 (41.12%), Postives = 68/107 (63.55%), Query Frame = 0
Query:   10 KEINGIPTDVTIINYSDRVFLVISQNSRFGTLISAKADDSLTQPGAAPSFDVNVLLGRRDDPLLLIYARQLVEAISKSSSRPLLLSISLRERDPGTFEKVMEWVRPL 117
            + ING+ T+  +  + DR+F+V++Q   FGTLI A+  DS++    A   +++V LGRRDDPLLL+Y RQL+E        P++ ++ L++R   TFE VM+ V  L
Sbjct:   16 QSINGVDTEFVLTVFVDRIFIVVTQVGTFGTLIEARQKDSISGKFQA---EIHVRLGRRDDPLLLVYGRQLLEHFGVPLGLPVVAALGLKDRSTATFEVVMKQVEAL 119          
The following BLAST results are available for this feature:
BLAST of NO24G00850 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21125.11.000e-4482.14Proteasome assembly chaperone 3 [Nannochloropsis g... [more]
XP_009526780.13.600e-1847.32hypothetical protein PHYSODRAFT_351247 [Phytophtho... [more]
XP_002899495.14.700e-1844.64conserved hypothetical protein [Phytophthora infes... [more]
OWZ02976.11.400e-1745.54hypothetical protein PHMEG_00025369 [Phytophthora ... [more]
ETI51540.13.100e-1744.64hypothetical protein F443_05131 [Phytophthora para... [more]
XP_008902512.16.800e-1744.64hypothetical protein PPTG_09334 [Phytophthora para... [more]
XP_024577762.13.400e-1646.73Uncharacterized conserved protein [Plasmopara hals... [more]
CCA19592.18.300e-1539.29conserved hypothetical protein [Albugo laibachii N... [more]
KYR01656.12.400e-1442.86proteasome assembly chaperone 3 [Tieghemostelium l... [more]
GAY02598.13.200e-1441.12Hypothetical protein PINS_010430 [Pythium insidios... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004847NSK004847Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00850.1NO24G00850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598220gene_7315Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100041g47gene9323Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00850.1NO24G00850.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00850 ID=NO24G00850|Name=NO24G00850|organism=Nannochloropsis oceanica|type=gene|length=2521bp
ATGGATGTAGGGGATGGATGCCTGCCATCGTGTGCGTCGAGATATGCGAT
AAGCGTCTTGTTGAAGGGTTTGTGAGGTTGCTCGTTCCCTTGGTGCCAGG
GTGAGGATTATGAAAAGAGAGACGCTCCCGTCAGAGTGCCGGCGCGAGTC
GTGCTAGTTATAAGTATTCCCCTGGCTCTTGAGGGATGATAACTTATGTA
ATTTTGGAGTTGTGTGTCAGGACGAGGAGGGTTTGGGACAGGACGAGGCA
GGAGCCGTGGTGCGGATCGTCGCCATAGCTCGCCCTGGCTTTTTTCCATC
TCTAAAACTCTCGCAGTAATTCTCACTGTCCCTGCATAAAGACCACAACA
ATACAATCAGGAGTATCTGTCCGAAATTGAAGGCATGGACGACCTGGCCT
ACAACGAGACCAAGgtgagtcttcacttttcattcgacctccccaccccc
ttgcgtttaatctagagcttaaccctctacccactccaataccaaaccat
ctctagGAAATCAATGGCATTCCCACGGACGTGACCATAATAAACTATAG
CGATCGCGTCTTCCTCGTTATCTCCCAAAACTCCAGGTTTGGCACCTTGg
tacgtgggagagaaggacagtgagagaagcaggataggggcagcattttg
tccggggcatctcgagagcgggtctccccctcccggtctcatcctatccc
ggacatatgctctatccacataaccgacagATATCAGCCAAGGCCGACGA
CAGCTTAACCCAGCCCGGTGCCGCCCCTTCCTTCGACGTGAACGTACTCC
TCGGCCGACGGGACGACCCGCTGCTCCTGATCTACGCACGCCAGCTGGTA
GAAGCTATCAGCAAATCATCCTCTCGACCACTATTGCTATCAATTTCTCT
TCGAGAGCGGGACCCGGGCACTTTCGAAAAGGTGATGGAATGGGTGAGAC
CATTGCTGTAGTATGGCTCAACAGCTGGTAGCAGAAGGGAGGGATAGGTC
AGGGCCTCATGTCAACCCAAAGAAAGAGGTACACGTAAATGACACAGACA
AACTGAAAAGTAAAGTAGACTTCTATCAAATGCGGAAATTACTCAATGAC
ACAGTTGTCTTTTTGCTGCATAATTGTCGCAGTGAGAGCGTGATCCAGTC
ATCCCTATTTGCTTTTGCTCTTATCAACCCCTTACATGTCCTTGCTCTTA
TCTACCCCTTGCTGATCCTTCTCCCTCCCACAATCTCCAACTTCTCTATT
GACGTTTCTTTTTAGAGCTCATTAGCGGGACTTCGAGCGCCTTTCCCCAT
CCCTTTCGCAGCGGCCGCGGCTTCTGCTGCTTCCCTTTCCTTCTTTTGCT
TGGCTTTCTCGCCGTTCATGATGATGGTGGTGCCTTTCTCGGAGATGTGA
GTCGCTTGCTGGTGCTGCCACTGAGACCCTCGGTCCCCTCTCTGCTGGCT
CTCTCCTTGTACGGCCTGGCCGGAGAATACCTCCTTCGTGAAGGCCTCCA
TCGCGGGATTGACCTGGAGGTTGGATTGAGGCGGAAGGATGGAGCGTTTG
GGGTGTCAGCGAGAGTCTGACTGTGTGAGTGGGCGTAAAGGGATGCATTC
TGCATCTGGCTTGCACGTCCTCCCATGATACATGAAATTTACGCGTCTGC
CGACAGTTCACCCTGGAAGACGCATTTCCTTGTCACTTCATCCCGTCTCT
CCCCCCTTCCCTCCCTCCCCATCTTCCTCCTTTTCCCTCAAACCTTGGCG
ACGTATTGACTCATCTTCCGCTGCACGCGTTTTCCGATCTCAGAATTGCT
ATAATCTGCTATGAAAGCAAGCTCATCTACCGTGAAGGTGCTGGCGTAAG
CGTTTTGCATCACCTGGCTCAATGCCCGCGTGTCTGATTTGCGGATGGCC
TGCCTAATTTTCTTAAGTGTTATGTGTCAACGCGGAGAAGATGGAATTTG
ATTGATTTAGATGTGATAGCACAGTGGTCATGGGAAGAGAATGGAGAGGA
CCATAGAGCTGATGGCGCGTTGTCAACAAACGGACCGCTCAAAAGCCATA
TCACTCTCATTACACCACACTTACATCGGCGGCATCTGGGCCTTTGACTC
GCGCCGCTTCTTGGACGAGACCTTCAAGCGTCTCGATCAAAGGCGTACCC
TGCATAACGCGGGCGGCATGGTATTGTCTGTTCTCCTTCGTGTCCTCCAT
CGTGGCGTCGCTGGCCCGGGTCTCTCGCTTGGCCTTTTGCTGCTTCTGTT
GCTGCAGCTTCATCTGCGCCTTGTGCTGCTGCGGCTTCTTCCCTTGTAGC
TGAGCATTCTGTCTCCCCCCTGCGCCTGCGACCGCTCTTCTTTGTCAGTG
GTCGCGGCATTCGCTTTCGTTTTCTTGGCCTGGTTGGGCTTTGCAGTCGA
GTTTCCGACTAGCAAGAGTAACACGAGCACCAGGAGAAGGATAGACCACC
GTCGACGGCTGCGGCTGACGACGGATAAGGATAATTGGACCATCGCACGG
GGCACAGGGTTACGAGGCTGT
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protein sequence of NO24G00850.1

>NO24G00850.1-protein ID=NO24G00850.1-protein|Name=NO24G00850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MDDLAYNETKEINGIPTDVTIINYSDRVFLVISQNSRFGTLISAKADDSL
TQPGAAPSFDVNVLLGRRDDPLLLIYARQLVEAISKSSSRPLLLSISLRE
RDPGTFEKVMEWVRPLL*
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Synonyms
Publications