NO24G00840, NO24G00840 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO24G00840 vs. NCBI_GenBank
Match: ANT70525.1 (violaxanthin de-epoxidase [Nannochloropsis oceanica]) HSP 1 Score: 602.8 bits (1553), Expect = 8.400e-169 Identity = 310/318 (97.48%), Postives = 312/318 (98.11%), Query Frame = 0 Query: 76 DQDRSSDWWKDPRATQRLLDPASAPLSAAERVXXXXXXXXXXXXXXXXXXXXFDRFLFSASYSMRNFKRLAFSVALPVLLSINGDSLFAGGLPHPPVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVLDHEPDQFIAIFYRGQNDAWTGYGGG-WYTHGDPPSLP 393 DQDRSSDWWKDPRATQRLLDPASAPLSAAERV XXXXXXXXXXXXXXXXXXXFDRFLFSASYSMRNFKRLAFSVALPVLLSINGDSLFAGGLPHPPVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWY+LDHEPDQFIAIFYRGQNDAWTGYGGG YT G PS+P Sbjct: 7 DQDRSSDWWKDPRATQRLLDPASAPLSAAERVKXXXXXXXXXXXXXXXXXXXFDRFLFSASYSMRNFKRLAFSVALPVLLSINGDSLFAGGLPHPPVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYILDHEPDQFIAIFYRGQNDAWTGYGGGVVYTRG--PSVP 322
BLAST of NO24G00840 vs. NCBI_GenBank
Match: XP_005853521.1 (violaxanthin de-epoxidase [Nannochloropsis gaditana CCMP526] >EKU22838.1 violaxanthin de-epoxidase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 485.0 bits (1247), Expect = 2.500e-133 Identity = 228/302 (75.50%), Postives = 254/302 (84.11%), Query Frame = 0 Query: 82 DWWKDPRATQRLLDPAS--APLSAAERVXXXXXXXXXXXXXXXXXXXXFDRFLFSASYSMRNFKRLAFSVALPVLLSINGDSLFAGGLPHPPVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVLDHEPDQFIAIFYRGQNDAWTGYGGG 382 +WW DP+AT+RLLDPA+ P+S + F F S++ KR AFS+A+PVLL++NG SLF+GG+ HPPVAAAVDS+KVG CLL+ CQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDG+YPVP DSALV SFD+N+FKGKWYISAGLNPLFD FDCQVHFFTVQGD+LYGKLNWRITEPDGEFFTRDTVQRFVQDP+ PGKLYNHDNEYLHYQDDWY+LD+EP+ FIA++YRGQNDAWTGYGGG Sbjct: 77 EWWADPQATRRLLDPAAKERPVSGNQ--------------------ARSPGFWFKDVLSLQALKRRAFSLAVPVLLAVNGGSLFSGGMLHPPVAAAVDSIKVGTCLLKECQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGTYPVPPDSALVSSFDMNTFKGKWYISAGLNPLFDCFDCQVHFFTVQGDRLYGKLNWRITEPDGEFFTRDTVQRFVQDPRAPGKLYNHDNEYLHYQDDWYILDYEPNVFIAVYYRGQNDAWTGYGGG 358
BLAST of NO24G00840 vs. NCBI_GenBank
Match: EWM21133.1 (violaxanthin de-epoxidase [Nannochloropsis gaditana]) HSP 1 Score: 481.9 bits (1239), Expect = 2.100e-132 Identity = 227/302 (75.17%), Postives = 253/302 (83.77%), Query Frame = 0 Query: 82 DWWKDPRATQRLLDPAS--APLSAAERVXXXXXXXXXXXXXXXXXXXXFDRFLFSASYSMRNFKRLAFSVALPVLLSINGDSLFAGGLPHPPVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVLDHEPDQFIAIFYRGQNDAWTGYGGG 382 +WW DP+AT+RLLDPA+ P+S + F F S++ KR AFS+A+PVLL++N SLF+GG+ HPPVAAAVDS+KVG CLL+ CQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDG+YPVP DSALV SFD+N+FKGKWYISAGLNPLFD FDCQVHFFTVQGD+LYGKLNWRITEPDGEFFTRDTVQRFVQDP+ PGKLYNHDNEYLHYQDDWY+LD+EP+ FIA++YRGQNDAWTGYGGG Sbjct: 93 EWWADPQATRRLLDPAAKERPVSGNQ--------------------ARSPGFWFKDVLSLQALKRRAFSLAVPVLLAVNWGSLFSGGMLHPPVAAAVDSIKVGTCLLKECQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGTYPVPPDSALVSSFDMNTFKGKWYISAGLNPLFDCFDCQVHFFTVQGDRLYGKLNWRITEPDGEFFTRDTVQRFVQDPRAPGKLYNHDNEYLHYQDDWYILDYEPNVFIAVYYRGQNDAWTGYGGG 374
BLAST of NO24G00840 vs. NCBI_GenBank
Match: CEM08622.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 317.8 bits (813), Expect = 5.400e-83 Identity = 143/209 (68.42%), Postives = 169/209 (80.86%), Query Frame = 0 Query: 173 AAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQG-DKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVLDHEPDQFIAIFYRGQNDAWTGYGG 381 A A D VKVG CLLQ C L+LA+C+L+P+C A+++CLN CNNK DE CQ+ CG+LFENEVVG+FNACA+S K+CV +K DDGSYP A FD + FKG+WYISAGLNP+FDIFDCQVHFF ++YGKL WRITEPDGEFFTRDTVQRFVQ + G L+NHDNEYLHYQDDWY++D+EPD FIAI+YRG+NDAW GYGG Sbjct: 77 AFATDPVKVGTCLLQKCNLQLAQCLLNPRCAADIVCLNLCNNKPDEAECQVKCGNLFENEVVGKFNACAVSDKKCVDQKMDDGSYPDIPYEAFKHDFDTDLFKGRWYISAGLNPIFDIFDCQVHFFDAPSPGRIYGKLYWRITEPDGEFFTRDTVQRFVQQ-EDKGLLFNHDNEYLHYQDDWYIIDYEPDDFIAIYYRGRNDAWIGYGG 284
BLAST of NO24G00840 vs. NCBI_GenBank
Match: AVT56389.1 (VDE2 [Tagetes erecta]) HSP 1 Score: 310.8 bits (795), Expect = 6.600e-81 Identity = 149/266 (56.02%), Postives = 184/266 (69.17%), Query Frame = 0 Query: 171 PVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVL----DHEPDQFIAIFYRGQNDAWTGYGGG-WYTHGDPPSLPSTRSGSRRPSPRLEWTMRNFRTWTIRVASRVRTRRSCGP 432 P AVD++K CLL+ C++ELA+CI +P C ANV CL TCNN+ DE CQI CGDLFEN VV QFN CA+S+K+CVPRK D G +P+P S+LV SF+I F GKW+I++GLNP FDIFDCQ+H F + DKL G L WRI PDG FFTR VQ+FVQDP PG LYNHDNE+LHYQDDWY+L +++PD +I ++YRG+NDAW GYGG YT +LP T + + + RNF T+TI T SCGP Sbjct: 126 PKVDAVDALKTCACLLKECRIELAKCIANPSCAANVACLQTCNNRPDETECQIKCGDLFENSVVDQFNECAVSRKKCVPRKSDVGEFPIPDPSSLVQSFNIKDFSGKWFITSGLNPTFDIFDCQLHEFHTEADKLVGNLTWRIKTPDGGFFTRSAVQKFVQDPNLPGVLYNHDNEFLHYQDDWYILSSQIENKPDDYIFVYYRGRNDAWDGYGGAVIYTRSS--TLPQTIVPKLQAA--AQSVGRNFDTFTI-------TDNSCGP 380
BLAST of NO24G00840 vs. NCBI_GenBank
Match: AIS36042.1 (violaxanthin de-epoxidase [Lycium chinense]) HSP 1 Score: 308.1 bits (788), Expect = 4.300e-80 Identity = 146/267 (54.68%), Postives = 184/267 (68.91%), Query Frame = 0 Query: 173 AAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVL----DHEPDQFIAIFYRGQNDAWTGYGGG-WYTHGD--PPS-LPSTRSGSRRPSPRLEWTMRNFRTWTIRVASRVRTRRSCGP 432 A AVD++K CLL+ C+LELA+CI +P C ANV CL TCNN+ DE CQI CGDLFEN VV +FN CA+S+K+CVPRK D G +PVP S LV FD+N F GKWYI+ GLNP FD FDCQ+H F + +KL G L WRI PDG FFTR VQ+FVQDPK+PG LYNHDNEYLHY+DDWY+L ++ PD +I ++Y+G+NDAW GYGG YT P S +P ++ +++ R+F TW ++T +CGP Sbjct: 124 ADAVDALKTCTCLLKECRLELAKCIANPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGEFPVPDPSVLVQKFDMNDFSGKWYITRGLNPTFDAFDCQLHEFHTEDNKLVGNLAWRIRTPDGGFFTRSAVQKFVQDPKYPGILYNHDNEYLHYEDDWYILSSKVENSPDDYIFVYYKGRNDAWDGYGGSVLYTRSAVLPESIIPELQTAAQKVG-------RDFNTW-------IKTDNTCGP 376
BLAST of NO24G00840 vs. NCBI_GenBank
Match: AIX87530.1 (violaxanthin de-epoxidase [Lycium ruthenicum]) HSP 1 Score: 308.1 bits (788), Expect = 4.300e-80 Identity = 146/267 (54.68%), Postives = 184/267 (68.91%), Query Frame = 0 Query: 173 AAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVL----DHEPDQFIAIFYRGQNDAWTGYGGG-WYTHGD--PPS-LPSTRSGSRRPSPRLEWTMRNFRTWTIRVASRVRTRRSCGP 432 A AVD++K CLL+ C+LELA+CI +P C ANV CL TCNN+ DE CQI CGDLFEN VV +FN CA+S+K+CVPRK D G +PVP S LV FD+N F GKWYI+ GLNP FD FDCQ+H F + +KL G L WRI PDG FFTR VQ+FVQDPK+PG LYNHDNEYLHY+DDWY+L ++ PD +I ++Y+G+NDAW GYGG YT P S +P ++ +++ R+F TW ++T +CGP Sbjct: 124 ADAVDALKTCTCLLKECRLELAKCIANPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGEFPVPDPSVLVQKFDMNDFSGKWYITRGLNPTFDAFDCQLHEFHTEDNKLVGNLAWRIRTPDGGFFTRSAVQKFVQDPKYPGILYNHDNEYLHYEDDWYILSSKVENSPDDYIFVYYKGRNDAWDGYGGSVLYTRSAVLPESIIPELQTAAQKVG-------RDFNTW-------IKTDNTCGP 376
BLAST of NO24G00840 vs. NCBI_GenBank
Match: XP_011077080.1 (violaxanthin de-epoxidase, chloroplastic [Sesamum indicum]) HSP 1 Score: 307.8 bits (787), Expect = 5.600e-80 Identity = 146/267 (54.68%), Postives = 184/267 (68.91%), Query Frame = 0 Query: 171 PVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVL----DHEPDQFIAIFYRGQNDAWTGYGGGWYTHGDPPSLPSTRSGSRRPS--PRLEWTMRNFRTWTIRVASRVRTRRSCGP 432 P A AVD++K CLL+ C+LELA+CI +P C AN+ CL TCNN+ DE CQI CGDLFEN VV +FN CA+S+K+CVPRK D G +P P + LV +FDIN+F GKWYI+ GLNP FD FDCQ+H F + +KL G ++WRI PD FFTR TVQRFVQDPK+PG LYNHDNE+LHYQDDWY+L +++PD +I ++YRG+NDAW GYGG ++ TRS S P+LE +N +RT +CGP Sbjct: 131 PTADAVDALKTCACLLKECRLELAKCIANPSCAANIACLQTCNNRPDETECQIKCGDLFENSVVDEFNDCAVSRKKCVPRKSDLGEFPAPDPTVLVQNFDINNFNGKWYITRGLNPTFDTFDCQLHEFHTESNKLVGNISWRIKTPDTGFFTRSTVQRFVQDPKYPGILYNHDNEFLHYQDDWYILSSKVENQPDDYIFVYYRGRNDAWDGYGG---------AVVYTRSAVLPESIVPQLEKAAKNVGR---DFNKFIRTDNTCGP 385
BLAST of NO24G00840 vs. NCBI_GenBank
Match: AIX87506.1 (violaxanthin de-epoxidase [Lycium barbarum]) HSP 1 Score: 307.4 bits (786), Expect = 7.300e-80 Identity = 146/267 (54.68%), Postives = 184/267 (68.91%), Query Frame = 0 Query: 173 AAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVL----DHEPDQFIAIFYRGQNDAWTGYGGG-WYTHGD--PPS-LPSTRSGSRRPSPRLEWTMRNFRTWTIRVASRVRTRRSCGP 432 A AVD++K CLL+ C+LELA+CI +P C ANV CL TCNN+ DE CQI CGDLFEN VV +FN CA+S+K+CVPRK D G +PVP S LV F++N F GKWYI+ GLNP FD FDCQ+H F + +KL G L WRI PDG FFTR VQ+FVQDPK+PG LYNHDNEYLHYQDDWY+L ++ PD +I ++Y+G+NDAW GYGG YT P S +P ++ +++ R+F TW ++T +CGP Sbjct: 124 ADAVDALKTCTCLLKECRLELAKCIANPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGEFPVPDPSVLVQKFNMNDFSGKWYITRGLNPTFDAFDCQLHEFHTEDNKLVGNLAWRIRTPDGGFFTRSAVQKFVQDPKYPGILYNHDNEYLHYQDDWYILSSKVENSPDDYIFVYYKGRNDAWDGYGGSVLYTRSAVLPESIIPELQTAAQKVG-------RDFNTW-------IKTDNTCGP 376
BLAST of NO24G00840 vs. NCBI_GenBank
Match: OTG01858.1 (putative violaxanthin de-epoxidase protein [Helianthus annuus]) HSP 1 Score: 307.0 bits (785), Expect = 9.500e-80 Identity = 150/270 (55.56%), Postives = 181/270 (67.04%), Query Frame = 0 Query: 171 PVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVL----DHEPDQFIAIFYRGQNDAWTGYGGG-WYTHGDPPSLPSTRSGSRRPSPRLEWTM----RNFRTWTIRVASRVRTRRSCGP 432 P AVD++K CLL+ C++ELA+CI +P C AN+ CL TCNN+ DE CQI CGDLFEN VV QFN CA+S+ +CVPRK D G +PVP SALV SF++ F GKWYI++GLNP FDIFDCQ+H F ++GDKL G L WRI PDG FFTR VQ FVQDP P LYNHDNE+LHYQDDWY+L D++PD +I ++YRG+NDAW GYGG YT LP T PRL+ R F T+T T +CGP Sbjct: 120 PNVDAVDALKTCTCLLKECRIELAKCIANPSCAANIACLQTCNNRPDETECQIKCGDLFENSVVDQFNECAVSRNKCVPRKSDVGEFPVPDPSALVKSFNMKDFSGKWYITSGLNPTFDIFDCQLHEFHMEGDKLVGNLTWRIKTPDGGFFTRSAVQTFVQDPNLPAALYNHDNEFLHYQDDWYILSAQTDNKPDDYIFVYYRGRNDAWDGYGGAVIYTRSS--KLPQT------IIPRLQAAAQSVGRTFETFT-------TTDNTCGP 374 The following BLAST results are available for this feature:
BLAST of NO24G00840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G00840 ID=NO24G00840|Name=NO24G00840|organism=Nannochloropsis oceanica|type=gene|length=2228bpback to top protein sequence of NO24G00840.1 >NO24G00840.1-protein ID=NO24G00840.1-protein|Name=NO24G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bpback to top Synonyms
Publications
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