NO24G00840, NO24G00840 (gene) Nannochloropsis oceanica

Overview
NameNO24G00840
Unique NameNO24G00840
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2228
Alignment locationchr24:235462..237689 -

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Properties
Property NameValue
DescriptionViolaxanthin de-epoxidase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:235462..237689 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0046422violaxanthin de-epoxidase activity
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0009507chloroplast
GO:0009507chloroplast
Vocabulary: INTERPRO
TermDefinition
IPR012674Calycin
IPR010788VDE
Homology
BLAST of NO24G00840 vs. NCBI_GenBank
Match: ANT70525.1 (violaxanthin de-epoxidase [Nannochloropsis oceanica])

HSP 1 Score: 602.8 bits (1553), Expect = 8.400e-169
Identity = 310/318 (97.48%), Postives = 312/318 (98.11%), Query Frame = 0
Query:   76 DQDRSSDWWKDPRATQRLLDPASAPLSAAERVXXXXXXXXXXXXXXXXXXXXFDRFLFSASYSMRNFKRLAFSVALPVLLSINGDSLFAGGLPHPPVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVLDHEPDQFIAIFYRGQNDAWTGYGGG-WYTHGDPPSLP 393
            DQDRSSDWWKDPRATQRLLDPASAPLSAAERV XXXXXXXXXXXXXXXXXXXFDRFLFSASYSMRNFKRLAFSVALPVLLSINGDSLFAGGLPHPPVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWY+LDHEPDQFIAIFYRGQNDAWTGYGGG  YT G  PS+P
Sbjct:    7 DQDRSSDWWKDPRATQRLLDPASAPLSAAERVKXXXXXXXXXXXXXXXXXXXFDRFLFSASYSMRNFKRLAFSVALPVLLSINGDSLFAGGLPHPPVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYILDHEPDQFIAIFYRGQNDAWTGYGGGVVYTRG--PSVP 322          
BLAST of NO24G00840 vs. NCBI_GenBank
Match: XP_005853521.1 (violaxanthin de-epoxidase [Nannochloropsis gaditana CCMP526] >EKU22838.1 violaxanthin de-epoxidase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 485.0 bits (1247), Expect = 2.500e-133
Identity = 228/302 (75.50%), Postives = 254/302 (84.11%), Query Frame = 0
Query:   82 DWWKDPRATQRLLDPAS--APLSAAERVXXXXXXXXXXXXXXXXXXXXFDRFLFSASYSMRNFKRLAFSVALPVLLSINGDSLFAGGLPHPPVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVLDHEPDQFIAIFYRGQNDAWTGYGGG 382
            +WW DP+AT+RLLDPA+   P+S  +                         F F    S++  KR AFS+A+PVLL++NG SLF+GG+ HPPVAAAVDS+KVG CLL+ CQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDG+YPVP DSALV SFD+N+FKGKWYISAGLNPLFD FDCQVHFFTVQGD+LYGKLNWRITEPDGEFFTRDTVQRFVQDP+ PGKLYNHDNEYLHYQDDWY+LD+EP+ FIA++YRGQNDAWTGYGGG
Sbjct:   77 EWWADPQATRRLLDPAAKERPVSGNQ--------------------ARSPGFWFKDVLSLQALKRRAFSLAVPVLLAVNGGSLFSGGMLHPPVAAAVDSIKVGTCLLKECQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGTYPVPPDSALVSSFDMNTFKGKWYISAGLNPLFDCFDCQVHFFTVQGDRLYGKLNWRITEPDGEFFTRDTVQRFVQDPRAPGKLYNHDNEYLHYQDDWYILDYEPNVFIAVYYRGQNDAWTGYGGG 358          
BLAST of NO24G00840 vs. NCBI_GenBank
Match: EWM21133.1 (violaxanthin de-epoxidase [Nannochloropsis gaditana])

HSP 1 Score: 481.9 bits (1239), Expect = 2.100e-132
Identity = 227/302 (75.17%), Postives = 253/302 (83.77%), Query Frame = 0
Query:   82 DWWKDPRATQRLLDPAS--APLSAAERVXXXXXXXXXXXXXXXXXXXXFDRFLFSASYSMRNFKRLAFSVALPVLLSINGDSLFAGGLPHPPVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVLDHEPDQFIAIFYRGQNDAWTGYGGG 382
            +WW DP+AT+RLLDPA+   P+S  +                         F F    S++  KR AFS+A+PVLL++N  SLF+GG+ HPPVAAAVDS+KVG CLL+ CQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDG+YPVP DSALV SFD+N+FKGKWYISAGLNPLFD FDCQVHFFTVQGD+LYGKLNWRITEPDGEFFTRDTVQRFVQDP+ PGKLYNHDNEYLHYQDDWY+LD+EP+ FIA++YRGQNDAWTGYGGG
Sbjct:   93 EWWADPQATRRLLDPAAKERPVSGNQ--------------------ARSPGFWFKDVLSLQALKRRAFSLAVPVLLAVNWGSLFSGGMLHPPVAAAVDSIKVGTCLLKECQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGTYPVPPDSALVSSFDMNTFKGKWYISAGLNPLFDCFDCQVHFFTVQGDRLYGKLNWRITEPDGEFFTRDTVQRFVQDPRAPGKLYNHDNEYLHYQDDWYILDYEPNVFIAVYYRGQNDAWTGYGGG 374          
BLAST of NO24G00840 vs. NCBI_GenBank
Match: CEM08622.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 317.8 bits (813), Expect = 5.400e-83
Identity = 143/209 (68.42%), Postives = 169/209 (80.86%), Query Frame = 0
Query:  173 AAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQG-DKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVLDHEPDQFIAIFYRGQNDAWTGYGG 381
            A A D VKVG CLLQ C L+LA+C+L+P+C A+++CLN CNNK DE  CQ+ CG+LFENEVVG+FNACA+S K+CV +K DDGSYP     A    FD + FKG+WYISAGLNP+FDIFDCQVHFF      ++YGKL WRITEPDGEFFTRDTVQRFVQ  +  G L+NHDNEYLHYQDDWY++D+EPD FIAI+YRG+NDAW GYGG
Sbjct:   77 AFATDPVKVGTCLLQKCNLQLAQCLLNPRCAADIVCLNLCNNKPDEAECQVKCGNLFENEVVGKFNACAVSDKKCVDQKMDDGSYPDIPYEAFKHDFDTDLFKGRWYISAGLNPIFDIFDCQVHFFDAPSPGRIYGKLYWRITEPDGEFFTRDTVQRFVQQ-EDKGLLFNHDNEYLHYQDDWYIIDYEPDDFIAIYYRGRNDAWIGYGG 284          
BLAST of NO24G00840 vs. NCBI_GenBank
Match: AVT56389.1 (VDE2 [Tagetes erecta])

HSP 1 Score: 310.8 bits (795), Expect = 6.600e-81
Identity = 149/266 (56.02%), Postives = 184/266 (69.17%), Query Frame = 0
Query:  171 PVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVL----DHEPDQFIAIFYRGQNDAWTGYGGG-WYTHGDPPSLPSTRSGSRRPSPRLEWTMRNFRTWTIRVASRVRTRRSCGP 432
            P   AVD++K   CLL+ C++ELA+CI +P C ANV CL TCNN+ DE  CQI CGDLFEN VV QFN CA+S+K+CVPRK D G +P+P  S+LV SF+I  F GKW+I++GLNP FDIFDCQ+H F  + DKL G L WRI  PDG FFTR  VQ+FVQDP  PG LYNHDNE+LHYQDDWY+L    +++PD +I ++YRG+NDAW GYGG   YT     +LP T     + +   +   RNF T+TI       T  SCGP
Sbjct:  126 PKVDAVDALKTCACLLKECRIELAKCIANPSCAANVACLQTCNNRPDETECQIKCGDLFENSVVDQFNECAVSRKKCVPRKSDVGEFPIPDPSSLVQSFNIKDFSGKWFITSGLNPTFDIFDCQLHEFHTEADKLVGNLTWRIKTPDGGFFTRSAVQKFVQDPNLPGVLYNHDNEFLHYQDDWYILSSQIENKPDDYIFVYYRGRNDAWDGYGGAVIYTRSS--TLPQTIVPKLQAA--AQSVGRNFDTFTI-------TDNSCGP 380          
BLAST of NO24G00840 vs. NCBI_GenBank
Match: AIS36042.1 (violaxanthin de-epoxidase [Lycium chinense])

HSP 1 Score: 308.1 bits (788), Expect = 4.300e-80
Identity = 146/267 (54.68%), Postives = 184/267 (68.91%), Query Frame = 0
Query:  173 AAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVL----DHEPDQFIAIFYRGQNDAWTGYGGG-WYTHGD--PPS-LPSTRSGSRRPSPRLEWTMRNFRTWTIRVASRVRTRRSCGP 432
            A AVD++K   CLL+ C+LELA+CI +P C ANV CL TCNN+ DE  CQI CGDLFEN VV +FN CA+S+K+CVPRK D G +PVP  S LV  FD+N F GKWYI+ GLNP FD FDCQ+H F  + +KL G L WRI  PDG FFTR  VQ+FVQDPK+PG LYNHDNEYLHY+DDWY+L    ++ PD +I ++Y+G+NDAW GYGG   YT     P S +P  ++ +++         R+F TW       ++T  +CGP
Sbjct:  124 ADAVDALKTCTCLLKECRLELAKCIANPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGEFPVPDPSVLVQKFDMNDFSGKWYITRGLNPTFDAFDCQLHEFHTEDNKLVGNLAWRIRTPDGGFFTRSAVQKFVQDPKYPGILYNHDNEYLHYEDDWYILSSKVENSPDDYIFVYYKGRNDAWDGYGGSVLYTRSAVLPESIIPELQTAAQKVG-------RDFNTW-------IKTDNTCGP 376          
BLAST of NO24G00840 vs. NCBI_GenBank
Match: AIX87530.1 (violaxanthin de-epoxidase [Lycium ruthenicum])

HSP 1 Score: 308.1 bits (788), Expect = 4.300e-80
Identity = 146/267 (54.68%), Postives = 184/267 (68.91%), Query Frame = 0
Query:  173 AAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVL----DHEPDQFIAIFYRGQNDAWTGYGGG-WYTHGD--PPS-LPSTRSGSRRPSPRLEWTMRNFRTWTIRVASRVRTRRSCGP 432
            A AVD++K   CLL+ C+LELA+CI +P C ANV CL TCNN+ DE  CQI CGDLFEN VV +FN CA+S+K+CVPRK D G +PVP  S LV  FD+N F GKWYI+ GLNP FD FDCQ+H F  + +KL G L WRI  PDG FFTR  VQ+FVQDPK+PG LYNHDNEYLHY+DDWY+L    ++ PD +I ++Y+G+NDAW GYGG   YT     P S +P  ++ +++         R+F TW       ++T  +CGP
Sbjct:  124 ADAVDALKTCTCLLKECRLELAKCIANPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGEFPVPDPSVLVQKFDMNDFSGKWYITRGLNPTFDAFDCQLHEFHTEDNKLVGNLAWRIRTPDGGFFTRSAVQKFVQDPKYPGILYNHDNEYLHYEDDWYILSSKVENSPDDYIFVYYKGRNDAWDGYGGSVLYTRSAVLPESIIPELQTAAQKVG-------RDFNTW-------IKTDNTCGP 376          
BLAST of NO24G00840 vs. NCBI_GenBank
Match: XP_011077080.1 (violaxanthin de-epoxidase, chloroplastic [Sesamum indicum])

HSP 1 Score: 307.8 bits (787), Expect = 5.600e-80
Identity = 146/267 (54.68%), Postives = 184/267 (68.91%), Query Frame = 0
Query:  171 PVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVL----DHEPDQFIAIFYRGQNDAWTGYGGGWYTHGDPPSLPSTRSGSRRPS--PRLEWTMRNFRTWTIRVASRVRTRRSCGP 432
            P A AVD++K   CLL+ C+LELA+CI +P C AN+ CL TCNN+ DE  CQI CGDLFEN VV +FN CA+S+K+CVPRK D G +P P  + LV +FDIN+F GKWYI+ GLNP FD FDCQ+H F  + +KL G ++WRI  PD  FFTR TVQRFVQDPK+PG LYNHDNE+LHYQDDWY+L    +++PD +I ++YRG+NDAW GYGG         ++  TRS     S  P+LE   +N           +RT  +CGP
Sbjct:  131 PTADAVDALKTCACLLKECRLELAKCIANPSCAANIACLQTCNNRPDETECQIKCGDLFENSVVDEFNDCAVSRKKCVPRKSDLGEFPAPDPTVLVQNFDINNFNGKWYITRGLNPTFDTFDCQLHEFHTESNKLVGNISWRIKTPDTGFFTRSTVQRFVQDPKYPGILYNHDNEFLHYQDDWYILSSKVENQPDDYIFVYYRGRNDAWDGYGG---------AVVYTRSAVLPESIVPQLEKAAKNVGR---DFNKFIRTDNTCGP 385          
BLAST of NO24G00840 vs. NCBI_GenBank
Match: AIX87506.1 (violaxanthin de-epoxidase [Lycium barbarum])

HSP 1 Score: 307.4 bits (786), Expect = 7.300e-80
Identity = 146/267 (54.68%), Postives = 184/267 (68.91%), Query Frame = 0
Query:  173 AAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVL----DHEPDQFIAIFYRGQNDAWTGYGGG-WYTHGD--PPS-LPSTRSGSRRPSPRLEWTMRNFRTWTIRVASRVRTRRSCGP 432
            A AVD++K   CLL+ C+LELA+CI +P C ANV CL TCNN+ DE  CQI CGDLFEN VV +FN CA+S+K+CVPRK D G +PVP  S LV  F++N F GKWYI+ GLNP FD FDCQ+H F  + +KL G L WRI  PDG FFTR  VQ+FVQDPK+PG LYNHDNEYLHYQDDWY+L    ++ PD +I ++Y+G+NDAW GYGG   YT     P S +P  ++ +++         R+F TW       ++T  +CGP
Sbjct:  124 ADAVDALKTCTCLLKECRLELAKCIANPACAANVACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPRKSDVGEFPVPDPSVLVQKFNMNDFSGKWYITRGLNPTFDAFDCQLHEFHTEDNKLVGNLAWRIRTPDGGFFTRSAVQKFVQDPKYPGILYNHDNEYLHYQDDWYILSSKVENSPDDYIFVYYKGRNDAWDGYGGSVLYTRSAVLPESIIPELQTAAQKVG-------RDFNTW-------IKTDNTCGP 376          
BLAST of NO24G00840 vs. NCBI_GenBank
Match: OTG01858.1 (putative violaxanthin de-epoxidase protein [Helianthus annuus])

HSP 1 Score: 307.0 bits (785), Expect = 9.500e-80
Identity = 150/270 (55.56%), Postives = 181/270 (67.04%), Query Frame = 0
Query:  171 PVAAAVDSVKVGKCLLQNCQLELARCILDPKCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPRKEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTVQGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQDDWYVL----DHEPDQFIAIFYRGQNDAWTGYGGG-WYTHGDPPSLPSTRSGSRRPSPRLEWTM----RNFRTWTIRVASRVRTRRSCGP 432
            P   AVD++K   CLL+ C++ELA+CI +P C AN+ CL TCNN+ DE  CQI CGDLFEN VV QFN CA+S+ +CVPRK D G +PVP  SALV SF++  F GKWYI++GLNP FDIFDCQ+H F ++GDKL G L WRI  PDG FFTR  VQ FVQDP  P  LYNHDNE+LHYQDDWY+L    D++PD +I ++YRG+NDAW GYGG   YT      LP T        PRL+       R F T+T        T  +CGP
Sbjct:  120 PNVDAVDALKTCTCLLKECRIELAKCIANPSCAANIACLQTCNNRPDETECQIKCGDLFENSVVDQFNECAVSRNKCVPRKSDVGEFPVPDPSALVKSFNMKDFSGKWYITSGLNPTFDIFDCQLHEFHMEGDKLVGNLTWRIKTPDGGFFTRSAVQTFVQDPNLPAALYNHDNEFLHYQDDWYILSAQTDNKPDDYIFVYYRGRNDAWDGYGGAVIYTRSS--KLPQT------IIPRLQAAAQSVGRTFETFT-------TTDNTCGP 374          
The following BLAST results are available for this feature:
BLAST of NO24G00840 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
ANT70525.18.400e-16997.48violaxanthin de-epoxidase [Nannochloropsis oceanic... [more]
XP_005853521.12.500e-13375.50violaxanthin de-epoxidase [Nannochloropsis gaditan... [more]
EWM21133.12.100e-13275.17violaxanthin de-epoxidase [Nannochloropsis gaditan... [more]
CEM08622.15.400e-8368.42unnamed protein product [Vitrella brassicaformis C... [more]
AVT56389.16.600e-8156.02VDE2 [Tagetes erecta][more]
AIS36042.14.300e-8054.68violaxanthin de-epoxidase [Lycium chinense][more]
AIX87530.14.300e-8054.68violaxanthin de-epoxidase [Lycium ruthenicum][more]
XP_011077080.15.600e-8054.68violaxanthin de-epoxidase, chloroplastic [Sesamum ... [more]
AIX87506.17.300e-8054.68violaxanthin de-epoxidase [Lycium barbarum][more]
OTG01858.19.500e-8055.56putative violaxanthin de-epoxidase protein [Helian... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004846NSK004846Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00840.1NO24G00840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598216gene_7314Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100041g46gene9322Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00840.1NO24G00840.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00840 ID=NO24G00840|Name=NO24G00840|organism=Nannochloropsis oceanica|type=gene|length=2228bp
ATGGAGGGCAGATCACAAAAGAGAATAGGACGCAGTGCCTGGTCACTCCT
CCTCCTCGTCTCCGTCTTCGGCCTGATGGCACCGTGTCTGGGTTTCCGAC
TCCCCTTCACCCCGTCAGCCTCCCCCTCCCCCCCCTCCTCCTCATCCTTG
CCCCCGTGTCGCCCCGCCAGAGCAGCCGCAGCTACGGCCACTTCTTCCAC
AACAAATATGCAAAAAAGAGCGCGAGACCAAGATAGATCTTCGGATTGGT
GGAAGGACCCCCGCGCAACGCAACGCCTCCTAGATCCCGCGTCAGCACCG
CTTAGCGCTGCCGAGCGCGTCAAGCCAGCAGCCGCAGCATCATCTTGCGC
TTCCTCTTCTTCGTCGTCGTCGTCGTCATCGTTTGACCGTTTCCTGTTCT
CGGCCTCCTACTCCATGCGGAATTTCAAGCGGCTGGCCTTCTCGGTTGCC
CTGCCCGTTCTCCTCTCTATCAATGGGGACAGCCTCTTTGCCGGCGGCCT
GCCCCATCCCCCGGTCGCCGCGGCAGTCGACAGCGTCAAGGTGGGCAAGT
GTCTGCTGCAGAATTGCCAGTTGGAGTTGGCACGATGTATCTTGGACCCC
AAGTGCTTGGCAAATGTGATCTGCTTGAATACGTGCAACAACAAGGCGGA
CGAGGTAGGCTGCCAGATTGGGTGTGGCGATCTTTTCGAGAACGAGGTGG
TGGGGCAATTTAATGCCTGCGCGCTAAGCAAGAAGCAGTGCGTACCTCGC
AAGGAGGATGACGGGTCTTATCCCGTCCCGGCAGACTCGGCGTTGGTCCC
GTCGTTTGACATCAATTCCTTCAAGGGCAAGTGGTACATCTCTGCGGGCC
TGAACCCGCTCTTTGACATCTTCGACTGCCAGGTCCACTTCTTCACCGTG
CAGGGCGATAAGCTCTATGGCAAGCTGAACTGGCGGATAACGGAGCCGGA
CGGGGAGTTTTTCACCCGTGACACGGTACAGCGGTTCGTGCAGGACCCGA
AGTTCCCGGGCAAGCTTTACAACCACGACAACGAGTACCTGCACTACCAG
gcaagttgacactttcactaccactgagttgtctcgtgaaatatgctcta
cattttcaatgtctcttaaagacacttgaatgggactgagggaggaggtc
cgaaggctcatgactgtgttctctgttgtccctccctccctccctccctg
ttaccttcctcctctctaacactcccctccttcctgtcttcctccctctc
tctccccagGACGATTGGTATGTCCTGGACCACGAGCCTGACCAGTTCAT
TGCCATCTTCTACCGGGGCCAGAATGACGCTTGGACGGGTTACGGCGGGG
GGTGGTATACACACGGGGACCCTCCGTCCCTCCCAAGTACAAGGAGCGGA
TCTCGGCGGCCTTCGCCAAGGCTGGAGTGGACTATGCGAAATTTCAGGAC
GTGGACAATACGTGTAGCGAGCAGAGTAAGAACCCGACGGTCTTGCGGGC
CGAATTTGCGAGAAGACTATTTTTGACTGAGGAGCAGCAGTTGCAGGAGG
CGCTGACGACGGCCAGAATCACGGCGGGAAATGCCATTCTGATGGAGGAG
AAGGAGGCACAGGCGGCAGTTAAAGAGCTCGAGCGGGCTATCAATAACTT
CGAGAGAGGGGTGGAGGAGGAGGTGATAAAGGATGTGAAAGTCCTCGAGG
GTGAGATAAAGGAGGTAGAGAAGACATTCGAGAAGGTGATCGACACCAAC
TTGTGGAAGAAGAATAACCAGCAGAACCTGGATTCTCTGGCCCAGAAACT
GGAGGGAAGACCACTGGTGGATCCCCGGCCAGCGCCCAAGTAGGAAGATG
GGGGATCTTGGGGAAGGGAGGGAGGGAGCGACGGAGGGAGCGAGGGAGGG
GTGCTGGACTGAATCGTATGGCATTGGTCGGGAGGGGCGCTGGGTGAGTT
TGAGTAGGGGTGTTGATTATGCAGGAGTAGGGGGGCAGGCAGTTTCCATA
GCTTTAGCGTGTGTGATTTTATATAGATAAAAACACGAGTGCACGAAAGG
TAGGCATGCAAAGAGAACATCGAGAATAACAGAAGGCAGAATCAAGAAAA
AGGGAGTGCACAGAGATTGAGTGGACGATGAGGTCGCCATGGCATAGGAA
GAGAGCAAGTGTCCTCCACCAGGAAACTAAAAAACGAGGAACGCAAAAAG
ACAAAATAATTAAGTGACCGCGGCAGAT
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protein sequence of NO24G00840.1

>NO24G00840.1-protein ID=NO24G00840.1-protein|Name=NO24G00840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=439bp
MEGRSQKRIGRSAWSLLLLVSVFGLMAPCLGFRLPFTPSASPSPPSSSSL
PPCRPARAAAATATSSTTNMQKRARDQDRSSDWWKDPRATQRLLDPASAP
LSAAERVKPAAAASSCASSSSSSSSSSFDRFLFSASYSMRNFKRLAFSVA
LPVLLSINGDSLFAGGLPHPPVAAAVDSVKVGKCLLQNCQLELARCILDP
KCLANVICLNTCNNKADEVGCQIGCGDLFENEVVGQFNACALSKKQCVPR
KEDDGSYPVPADSALVPSFDINSFKGKWYISAGLNPLFDIFDCQVHFFTV
QGDKLYGKLNWRITEPDGEFFTRDTVQRFVQDPKFPGKLYNHDNEYLHYQ
DDWYVLDHEPDQFIAIFYRGQNDAWTGYGGGWYTHGDPPSLPSTRSGSRR
PSPRLEWTMRNFRTWTIRVASRVRTRRSCGPNLREDYF*
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Synonyms
Publications