NO24G00810, NO24G00810 (gene) Nannochloropsis oceanica

Overview
NameNO24G00810
Unique NameNO24G00810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1089
Alignment locationchr24:231561..232649 +

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Properties
Property NameValue
DescriptionThioredoxin domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:231561..232649 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012936Erv_C
Vocabulary: Biological Process
TermDefinition
GO:0019725cellular homeostasis
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005623cell
Homology
BLAST of NO24G00810 vs. NCBI_GenBank
Match: EWM21113.1 (Thioredoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 287.7 bits (735), Expect = 2.100e-74
Identity = 139/153 (90.85%), Postives = 146/153 (95.42%), Query Frame = 0
Query:    1 MTNVSHLVHDLTFGPPMTREYREKLALLPKGFQQIESPLADRAYVVPKVHQAFHHYLKVVSTHYEVGRSFGGQKNTVLQYQMVVNSQVMHYQDDEVPEAKFSYDISPLATVISSKKRAWYEFLTSLMAIIGGTFTVLGLVDHMLGKVLKPKKM 154
            +TNVSH+VHDLTFGPP+TREYREKLALLPKGFQQ  SPLAD+ YVV KVH AFHHYLKVVSTHYEV R+FGGQK+TVLQYQMV NSQVMHYQDDEVPEAKFSYDISPLATVISSKKRAWYEFLTSLMAIIGGTFTVLGL+DHMLGKVLKPKKM
Sbjct:  314 LTNVSHVVHDLTFGPPVTREYREKLALLPKGFQQTRSPLADQVYVVSKVHHAFHHYLKVVSTHYEVSRTFGGQKSTVLQYQMVANSQVMHYQDDEVPEAKFSYDISPLATVISSKKRAWYEFLTSLMAIIGGTFTVLGLLDHMLGKVLKPKKM 466          
BLAST of NO24G00810 vs. NCBI_GenBank
Match: XP_005853522.1 (hypothetical protein NGA_0271420 [Nannochloropsis gaditana CCMP526] >EKU22839.1 hypothetical protein NGA_0271420 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 263.8 bits (673), Expect = 3.200e-67
Identity = 131/153 (85.62%), Postives = 137/153 (89.54%), Query Frame = 0
Query:    1 MTNVSHLVHDLTFGPPMTREYREKLALLPKGFQQIESPLADRAYVVPKVHQAFHHYLKVVSTHYEVGRSFGGQKNTVLQYQMVVNSQVMHYQDDEVPEAKFSYDISPLATVISSKKRAWYEFLTSLMAIIGGTFTVLGLVDHMLGKVLKPKKM 154
            +TNVSH+VHDLTFGPP+TREYREKLALLPKGFQQ  SPLAD+ YVV KVH AFHHYLKVVSTHYEV R+FGGQK+TVLQYQMV NSQVMHYQDDEVPEAKFSYDISPLATVISSKKRAWYEFLTSLMAIIGGTFT         GKVLKPKKM
Sbjct:  262 LTNVSHVVHDLTFGPPVTREYREKLALLPKGFQQTRSPLADQVYVVSKVHHAFHHYLKVVSTHYEVSRTFGGQKSTVLQYQMVANSQVMHYQDDEVPEAKFSYDISPLATVISSKKRAWYEFLTSLMAIIGGTFT---------GKVLKPKKM 405          
BLAST of NO24G00810 vs. NCBI_GenBank
Match: GAX20665.1 (hypothetical protein FisN_32Hh054 [Fistulifera solaris])

HSP 1 Score: 154.8 bits (390), Expect = 2.100e-34
Identity = 78/155 (50.32%), Postives = 109/155 (70.32%), Query Frame = 0
Query:    1 MTNVSHLVHDLTFGPPMTREYREKLALLPKGFQQIE--SPLADRAYVVPKVHQAFHHYLKVVSTHYEVGRSFGGQKNTVLQYQMVVNSQVMHYQDDEVPEAKFSYDISPLATVISSKKRAWYEFLTSLMAIIGGTFTVLGLVDHMLGKVLKPKKM 154
            +TNVSH+V+ L+FG P+ +  R+   +L +  ++ +  SP+ +  YV    H A HHY+KVVSTH E+G+S     N +  YQ +  SQV+HY D +VPEA+FSYDISP++ V+S + R WY++LTSL AIIGGTFT LGL+D +L  VLKPKK+
Sbjct:  328 LTNVSHIVNHLSFGDPVDQTSRKTKRILKQVDEKHKQFSPMDNSVYVTEMSHAAHHHYIKVVSTHLEMGQS---SNNRLTTYQFLEQSQVVHYFDTDVPEARFSYDISPMSVVVSKEGRKWYDYLTSLCAIIGGTFTTLGLIDAILYSVLKPKKL 479          
BLAST of NO24G00810 vs. NCBI_GenBank
Match: XP_009040624.1 (hypothetical protein AURANDRAFT_55105 [Aureococcus anophagefferens] >EGB04710.1 hypothetical protein AURANDRAFT_55105 [Aureococcus anophagefferens])

HSP 1 Score: 154.1 bits (388), Expect = 3.600e-34
Identity = 76/152 (50.00%), Postives = 109/152 (71.71%), Query Frame = 0
Query:    1 MTNVSHLVHDLTFGPPMTREYREKLALLPKGFQQIESPLADRAYVVPKVHQAFHHYLKVVSTHYEVGRSFGGQKNTVLQYQMVVNSQVMHYQDDEVPEAKFSYDISPLATVISSKKRAWYEFLTSLMAIIGGTFTVLGLVDHMLGKVLKPKK 153
            MTN+SH+V+ L+FG P+ ++ + K++  P+ FQ +  PL    +V    HQ  HHY KVVSTH+EVG     +   ++ YQM+  SQ+MHY + +VPEAKFSYD+SP+A ++SSK R WY+F+TS+ AIIGGTFTV+G+VD +L K++K  K
Sbjct:  174 MTNLSHVVNHLSFGTPLAKDMQRKVSKYPQ-FQSVH-PLDGGIFVSRDYHQVHHHYSKVVSTHFEVG-GMMTKSREIVGYQMLAQSQIMHYNEMDVPEAKFSYDLSPMAVLVSSKGRRWYDFVTSVCAIIGGTFTVVGIVDAVLYKIIKGGK 322          
BLAST of NO24G00810 vs. NCBI_GenBank
Match: XP_002182871.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45607.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 153.3 bits (386), Expect = 6.100e-34
Identity = 77/156 (49.36%), Postives = 108/156 (69.23%), Query Frame = 0
Query:    1 MTNVSHLVHDLTFGPPMTREYREKLALL---PKGFQQIESPLADRAYVVPKVHQAFHHYLKVVSTHYEVGRSFGGQKNTVLQYQMVVNSQVMHYQDDEVPEAKFSYDISPLATVISSKKRAWYEFLTSLMAIIGGTFTVLGLVDHMLGKVLKPKKM 154
            MTN+SH+V+ L+FG P+    R+   +L   P+  +Q  +P+  +A++    HQAFHHY+KVVSTH  +G S     N++L YQ +  SQ++ Y D  VPEA+FSYD+SP++ V+  + R WY++LTSL AIIGGTFT LGL+D  L KVLKPKK+
Sbjct:  316 MTNLSHVVNHLSFGEPIDENNRKSKRILKQVPEEHRQF-APMDGQAFLTKAFHQAFHHYIKVVSTHLNMGSS---DANSMLTYQFLEQSQIVFYDDVNVPEARFSYDLSPMSVVVEKEGRKWYDYLTSLCAIIGGTFTTLGLIDATLYKVLKPKKL 467          
BLAST of NO24G00810 vs. NCBI_GenBank
Match: OEU22912.1 (DUF1692-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 153.3 bits (386), Expect = 6.100e-34
Identity = 74/156 (47.44%), Postives = 110/156 (70.51%), Query Frame = 0
Query:    1 MTNVSHLVHDLTFGPPMTREYREKLALL---PKGFQQIESPLADRAYVVPKVHQAFHHYLKVVSTHYEVGRSFGGQKNTVLQYQMVVNSQVMHYQDDEVPEAKFSYDISPLATVISSKKRAWYEFLTSLMAIIGGTFTVLGLVDHMLGKVLKPKKM 154
            MTN++H+V+ ++FG P+ ++ R    +L   P+  QQ  +P+ +  Y+  + HQA+HHY+KVVSTH  VG +     N +L YQ +  SQV++Y++  VPEA+FSYD+SP++ V+  + R WY++LTSL AIIGGTFT LGL+D +L KV KPKK+
Sbjct:  317 MTNLTHVVNHMSFGEPLDQQSRRAKRILKQVPEEHQQF-NPMDNSMYLTKEFHQAYHHYIKVVSTHLNVGSTVA---NQMLTYQFLEQSQVVYYEESNVPEARFSYDLSPMSVVVEKEGRKWYDYLTSLCAIIGGTFTTLGLIDAVLYKVFKPKKL 468          
BLAST of NO24G00810 vs. NCBI_GenBank
Match: GAX12875.1 (hypothetical protein FisN_32Lh054 [Fistulifera solaris])

HSP 1 Score: 153.3 bits (386), Expect = 6.100e-34
Identity = 76/155 (49.03%), Postives = 109/155 (70.32%), Query Frame = 0
Query:    1 MTNVSHLVHDLTFGPPMTREYREKLALLPKGFQQIE--SPLADRAYVVPKVHQAFHHYLKVVSTHYEVGRSFGGQKNTVLQYQMVVNSQVMHYQDDEVPEAKFSYDISPLATVISSKKRAWYEFLTSLMAIIGGTFTVLGLVDHMLGKVLKPKKM 154
            +TNVSH+V+ L+FG P+ +  R+   +L +  ++ +  +P+ +  YV    H A HHY+KVVSTH E+G+S     N +  YQ +  SQV+HY D +VPEA+FSYDISP++ V+S + R WY++LTSL AIIGGTFT LGL+D +L  +LKPKK+
Sbjct:  328 LTNVSHIVNHLSFGEPVDQTSRKTKRILKQVDEKHKQFAPMDNTVYVTEMSHAAHHHYIKVVSTHLEMGQS---SNNRLTTYQFLEQSQVVHYFDTDVPEARFSYDISPMSVVVSKEGRKWYDYLTSLCAIIGGTFTTLGLIDAVLYSILKPKKL 479          
BLAST of NO24G00810 vs. NCBI_GenBank
Match: EJK74922.1 (hypothetical protein THAOC_03372 [Thalassiosira oceanica])

HSP 1 Score: 148.7 bits (374), Expect = 1.500e-32
Identity = 75/166 (45.18%), Postives = 109/166 (65.66%), Query Frame = 0
Query:    1 MTNVSHLVHDLTFGPPMT------------REYREKLALLPKGFQQIESPLADRAYVVPKVHQAFHHYLKVVSTHYEVGRSFG-GQKNTVLQYQMVVNSQVMHYQDDEVPEAKFSYDISPLATVISSKKRAWYEFLTSLMAIIGGTFTVLGLVDHMLGKVLKPKKM 154
            MTN++H V+ ++FG P+T            R+ +  L  +P+  +Q  +P+ D+ Y+  + HQAFHHY+KVVSTH  +G S      N++  YQM+  SQ++ Y +  VPEA+FSYD+SP++ V+  + R WY++LTSL AIIGGTFT LGL+D  L KV KPKK+
Sbjct:  419 MTNLTHRVNHISFGEPITKLPYHMENTPFMRKVKRVLKQVPEEHKQF-NPMDDQEYITTQFHQAFHHYIKVVSTHLNMGSSSTVNDVNSITVYQMLEQSQIVFYDEVNVPEARFSYDMSPMSVVVQKEGRKWYDYLTSLCAIIGGTFTTLGLIDATLYKVFKPKKL 583          
BLAST of NO24G00810 vs. NCBI_GenBank
Match: XP_002295231.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED87535.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 148.3 bits (373), Expect = 2.000e-32
Identity = 78/170 (45.88%), Postives = 108/170 (63.53%), Query Frame = 0
Query:    1 MTNVSHLVHDLTFGPPMT------------REYREKLALLPKGFQQIESPLADRAYVVPKVHQAFHHYLKVVSTHYEVGRSFGGQ-----KNTVLQYQMVVNSQVMHYQDDEVPEAKFSYDISPLATVISSKKRAWYEFLTSLMAIIGGTFTVLGLVDHMLGKVLKPKKM 154
            MTN++H V+ L+FG P+T            R+ +  L  +P+  +Q  +P+ D  YV  + HQAFHHY+KVVSTH  +G S   +      N V  YQM+  SQ++ Y +  VPEA+FSYD+SP++ V+  + R WY++LTSL AIIGGTFT LGL+D  L KV KPKK+
Sbjct:  324 MTNLTHRVNHLSFGEPITKLPPHMENTPFMRKVKRVLKQVPEEHKQF-NPMDDTEYVTAQFHQAFHHYIKVVSTHLNMGSSSKSEYSVNDVNAVTVYQMLEQSQIVFYDEVNVPEARFSYDMSPMSVVVQKEGRKWYDYLTSLCAIIGGTFTTLGLIDATLYKVFKPKKL 492          
BLAST of NO24G00810 vs. NCBI_GenBank
Match: EWM21843.1 (Thioredoxin domain protein [Nannochloropsis gaditana])

HSP 1 Score: 136.0 bits (341), Expect = 1.000e-28
Identity = 70/150 (46.67%), Postives = 99/150 (66.00%), Query Frame = 0
Query:    1 MTNVSHLVHDLTFGPPMTREYREKLALLPKGFQQIESPLADRAYVVPKVHQAFHHYLKVVSTHYEVGRSFGGQKNTVLQYQMVVNSQVMHYQDDEVPEAKFSYDISPLATVISSKKRAWYEFLTSLMAIIGGTFTVLGLVDHMLGKVLKP 151
            MTN+SH+V+ L+FGP    +   +L      F  + + L  R +V+ + H+A HHYLKVV T YEV   +G  +  +L YQM+  + +M Y  DEVPEAKFSY++SP+A ++    R WYEF+TSL  I+GGTFTV+GL+D  L ++LKP
Sbjct:  305 MTNLSHVVNHLSFGPLYDSQVLSRLERFSSEF-YVSNALDGRDFVLEEPHKAHHHYLKVVGTLYEVPMRWG--RADMLTYQMLPETSLMTYGLDEVPEAKFSYEVSPMAVIVKKTGRRWYEFVTSLCGILGGTFTVVGLLDSTLHRLLKP 451          
The following BLAST results are available for this feature:
BLAST of NO24G00810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21113.12.100e-7490.85Thioredoxin domain protein [Nannochloropsis gadita... [more]
XP_005853522.13.200e-6785.62hypothetical protein NGA_0271420 [Nannochloropsis ... [more]
GAX20665.12.100e-3450.32hypothetical protein FisN_32Hh054 [Fistulifera sol... [more]
XP_009040624.13.600e-3450.00hypothetical protein AURANDRAFT_55105 [Aureococcus... [more]
XP_002182871.16.100e-3449.36predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU22912.16.100e-3447.44DUF1692-domain-containing protein [Fragilariopsis ... [more]
GAX12875.16.100e-3449.03hypothetical protein FisN_32Lh054 [Fistulifera sol... [more]
EJK74922.11.500e-3245.18hypothetical protein THAOC_03372 [Thalassiosira oc... [more]
XP_002295231.12.000e-3245.88predicted protein [Thalassiosira pseudonana CCMP13... [more]
EWM21843.11.000e-2846.67Thioredoxin domain protein [Nannochloropsis gadita... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00810.1NO24G00810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00810.1NO24G00810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00810 ID=NO24G00810|Name=NO24G00810|organism=Nannochloropsis oceanica|type=gene|length=1089bp
ATGACGAATGTGTCGCATTTGGTGCATGACCTCACCTTCGGGCCGCCCAT
GACCAGGGAGTACAGgtaggcaatcaggcaggcagggaggcagggaggga
gggagggagggaacaggataagctgcagatgctgctttgcatgcacgaga
ggcaacatctatttgatccacacctgcgtcttttcctttactccttgtgc
cacagGGAGAAATTGGCGTTGCTGCCGAAGGGCTTTCAGCAGATCGAGTC
CCCGCTGGCAGACCGCGCGTACGTCGTACCCAAGGTGCATCAAGCCTTTC
ACCACTACCTGAAGgtaggtggctcagatcctgttcccaacccctgtccc
tctgcctctcctcgccgcatcctcgcgccccctgatacccgtctgcacgg
gagactggggatgcctctgggcaacaagcgtcaaggcgcatgttcaccac
actcctttcctccctccctccctccctcccccctccctccactccccccc
atctcttcagGTGGTGAGCACGCACTACGAGGTGGGCCGCTCCTTCGGCG
GGCAAAAGAATACCGTCCTACAGTACCAGATGGTCGTCAACTCACAGgta
ggtaagtgggcatgggaggagtggagagagggaaggtaggcgcccgcacg
tttttaagaaatcagtttgcttggagtcatcccttccctccctccctccc
tcccccttatcgcagGTGATGCACTACCAAGATGACGAGGTACCCGAGGC
AAAATTTTCCTACGATATTTCTCCTCTGGCCACCGTCATCAGCTCCAAGA
AGCGGGCGTGGTACGAGTTCCTCACTTCCCTGATGGCCATCATCGGCGGG
ACTTTCACCGgtaagtgatgggcaagggaggagagtgagaggagcaaggt
gtatgccttaccttgcctatgatactgcgtcacactaataagttgaggca
gcatctaagcagataccgtgcaagaggttttatccactttacatgtatat
ttcctcaacacatggtttccccttccttttcagTTCTGGGCCTGGTGGAC
CACATGCTGGGCAAGGTCCTCAAGCCTAAGAAGATGTAG
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protein sequence of NO24G00810.1

>NO24G00810.1-protein ID=NO24G00810.1-protein|Name=NO24G00810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MTNVSHLVHDLTFGPPMTREYREKLALLPKGFQQIESPLADRAYVVPKVH
QAFHHYLKVVSTHYEVGRSFGGQKNTVLQYQMVVNSQVMHYQDDEVPEAK
FSYDISPLATVISSKKRAWYEFLTSLMAIIGGTFTVLGLVDHMLGKVLKP
KKM*
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Synonyms
Publications