NO24G00650, NO24G00650 (gene) Nannochloropsis oceanica

Overview
NameNO24G00650
Unique NameNO24G00650
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1666
Alignment locationchr24:202655..204320 +

Link to JBrowse

Properties
Property NameValue
DescriptionTetratricopeptide-like helical
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:202655..204320 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
Homology
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BLAST of NO24G00650 vs. NCBI_GenBank
Match: EWM21110.1 (Tetratricopeptide-like helical [Nannochloropsis gaditana])

HSP 1 Score: 204.1 bits (518), Expect = 9.100e-49
Identity = 123/272 (45.22%), Postives = 157/272 (57.72%), Query Frame = 0 
Query:   50 TPSKEEHHRVKYQEVLTSLGGNLTQAAAQSLTGAEDMFSRSRSSMSSRGTGAPPLAPAKVLMAAKQSTEELLAEADPPLTPEALLFLGDLFWSGLQAQGMFIPQDQEKAAALWRAAGLRGDEEGTYNYANCLLFGSGTAENRSQAQVLLNKLAEKGHAQASYSLAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVRIYDLLCCAVKGGVVPAIHNLGNLLAEGRSPRVPRDDEVALELYSAGVELGDPMSTY 322
            T +++E +R KY ++LTSLGG++T + AQ+L GA    S S ++       APPL  A V+ A K+S EEL+A   PPL+ EALLFL D+FWSGL+   + IP+DQ KAA LWRAAG RGD EG Y YA CLL G G  E+R +A  LLN+L EKGH QA+YSLAV                                                V +Y LL  A+ GGVVPA+HN+GNLLAEG +  +PRDDE ALE+++AG    D   T+
Sbjct:   45 TVAEQELYRDKYVDMLTSLGGDITPSLAQALMGAS---SVSEATRRGAQMPAPPLDAATVVKAVKKSAEELVAREQPPLSNEALLFLADIFWSGLRMPDVSIPRDQAKAAELWRAAGERGDGEGAYRYAMCLLQGEGAPEHRDRATTLLNELVEKGHVQATYSLAVLLSAQLEDGQPLKRRGGARSRTPPQKKLGMGGKKSA------------VVVYGLLRRAIAGGVVPAVHNMGNLLAEG-AQELPRDDEAALEMFTAGTRRLDAPDTF 300
The following BLAST results are available for this feature:
BLAST of NO24G00650 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21110.19.100e-4945.22Tetratricopeptide-like helical [Nannochloropsis ga... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004831NSK004831Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00650.1NO24G00650.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567780gene_7297Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100041g28gene9307Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00650.1NO24G00650.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00650 ID=NO24G00650|Name=NO24G00650|organism=Nannochloropsis oceanica|type=gene|length=1666bp
ACAGAGCACAATGCGTCGTCTTGTAGGCTCCCTCGCATGCAGCGGCAGCA
GCAGCGGTGGCAGCAGCAGCCTCTCGCGCGGCAAACTAGCGACATCGTCG
TCCTTCCCAAGgtgagaatatgcaaaaacctcctctatgtaccccgtcag
gcggcaacatgtgcggcggaaagaggctctcctcgccactatgcttgccc
ggaccattcctgaccccgctcttcctctcttgctatagGGCGACTACCTA
TCCCGCTTTCCTCCCGCACGGCTTCACCACCATCACCCCCTCCAAAGAAG
AGCACCATCGGGTCAAGTATCAAGAGGTCCTGACCAGTCTAGGCGGTAAC
CTGACTCAAGCTGCTGCCCAGTCATTGACTGGTGCCGAGGATATGTTCAG
CAGGAGCAGGAGCAGCATGAGCAGCAGAGGCACTGGTGCCCCTCCTCTAG
CGCCTGCGAAGGTCTTGATGGCCGCCAAGCAGAGTACTGAAGAGCTTCTC
GCAGAAGCAGACCCACCTTTGACACCCGAAGCATTGTTGTTTCTAGGAGA
TTTGTTTTGGTCGGGCTTGCAGGCGCAGGGGATGTTTATTCCCCAGGACC
AGGAAAAGGCAGCCGCGCTCTGGCGGGCTGCGGGATTGAGAGGGGACGAG
GAGGGGACATATAACTATGCCAACTGCTTGCTCTTTGGGAGTGGGACCGC
AGAGAATCGATCACAAGCGCAGGTACTATTGAATAAACTCGCCGAAAAAG
GCCATGCTCAGGCCAGCTACAGCTTGGCTGTCTTGCTGACGGCGGCGCAG
CAAACGCAACAACACCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAAAGCGGCAGCAAATTCCAGCGAA
AAGAGAAAGAGGAAGACGATCCATTTGTGCGCATATACGACCTGTTGTGC
TGCGCGGTCAAAGGAGGGGTGGTCCCCGCCATCCATAATTTGGGGAACTT
GCTTGCCGAGGGACGGAGTCCGCGCGTGCCTCGTGATGACGAGGTGGCCT
TGGAGCTTTACAGCGCAGgtttgtgacaagagtaaagaaaactcaagaga
ggaacgattgggtgcttgataaatagaacatgtacacgtacccaatacac
ttcgatccccctttctctctctcttggtgcacgacatgaacacgaacaaa
cagGCGTCGAGCTAGGCGATCCTATGTCTACCTACACCTTGGCCACCTGG
CTCTGCCAAGGTCGTGGCGGTGAAGAAGACTGGGACCGAGGTTTCGAACT
CCACCGACAAGCAGCGGGGATGGGCATGCCCCAGGCGATGTACAACACGG
CCACTCATTTTTTTGCGGGACGAGGTGTAGTGCAGGATATGGTGCAGGCG
GCCCACTGGTTTCAACAAGCAGCTGAAGCAGGCTTTTCCAAAGCGATGAT
TAATCTGGGAAACATGCATTTGGAGGGCTTGGCACCCGCGCCACCGGTGG
GTGTGGCCCCTGTGGACGAAGCGCGACGATGGTTTGAGAGGGCGGCGATG
GCCGGCGACTCAGCAGCTGCTGAGGGACTGGCCAAGTGCGACGCGGCCTT
GGCTACTGCTACTGAGAAAGAGAAGGCGGAGGAGGGAGAAAAAGGAAAAA
CGATAAATTAATTTTT
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protein sequence of NO24G00650.1

>NO24G00650.1-protein ID=NO24G00650.1-protein|Name=NO24G00650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MRRLVGSLACSGSSSGGSSSLSRGKLATSSSFPRATTYPAFLPHGFTTIT
PSKEEHHRVKYQEVLTSLGGNLTQAAAQSLTGAEDMFSRSRSSMSSRGTG
APPLAPAKVLMAAKQSTEELLAEADPPLTPEALLFLGDLFWSGLQAQGMF
IPQDQEKAAALWRAAGLRGDEEGTYNYANCLLFGSGTAENRSQAQVLLNK
LAEKGHAQASYSLAVLLTAAQQTQQHLQQQQQQQQQQQQQQQQQQQQSGS
KFQRKEKEEDDPFVRIYDLLCCAVKGGVVPAIHNLGNLLAEGRSPRVPRD
DEVALELYSAGVELGDPMSTYTLATWLCQGRGGEEDWDRGFELHRQAAGM
GMPQAMYNTATHFFAGRGVVQDMVQAAHWFQQAAEAGFSKAMINLGNMHL
EGLAPAPPVGVAPVDEARRWFERAAMAGDSAAAEGLAKCDAALATATEKE
KAEEGEKGKTIN*
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Synonyms
Publications