NO24G00630, NO24G00630 (gene) Nannochloropsis oceanica

Overview
NameNO24G00630
Unique NameNO24G00630
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2003
Alignment locationchr24:197869..199871 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:197869..199871 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Homology
[Close]
BLAST of NO24G00630 vs. NCBI_GenBank
Match: EWM21142.1 (myb-like dna-binding domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 69.3 bits (168), Expect = 3.600e-8
Identity = 41/79 (51.90%), Postives = 49/79 (62.03%), Query Frame = 0 
Query:  167 MGFESPVLSLFGYEHSRQPHHAMASLFDNFPLSTLDASSAAGGAYFFQPSPTGAGNVNGGVDGYGFELLQQSWVGSPKA 246
            +GFESP L     +   Q HH + +LFD F  S LDAS+A     FFQPSPTGAG + G    Y FE+LQQ W GSPK+
Sbjct:  723 IGFESPTLPFLSCD---QRHH-LTTLFDGFSTSVLDASAA---GVFFQPSPTGAGIIGG--SEYDFEVLQQLWAGSPKS 792
The following BLAST results are available for this feature:
BLAST of NO24G00630 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21142.13.600e-851.90myb-like dna-binding domain containing protein [Na... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL042nonsL042Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR083ngnoR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00630.1NO24G00630.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00630.1NO24G00630.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00630 ID=NO24G00630|Name=NO24G00630|organism=Nannochloropsis oceanica|type=gene|length=2003bp
ATGAGTCCTATGGGCTTGGTGGTAGAGAAGAGGAGGGGATGTGACGGAAA
GGGAGGGGCACAAAGTGGTGGGAAGAAAAAGAGGAGGATGAGGGATTCGA
CTGATATTATTGCGGGTGCGGACGAGGATGACGAGCACCAGCAGCATTTG
CAGGAGGACGACGAGGAGGTGGAGGAGGAAGTGGAGTTGCAAGAGAATGG
AGAGAATATTGCGGCTGGTGGTTATACTGCTGCTGACAAGGCCGTGAAGG
GATACTCAATGCTACCCCTTCAGCGTCCAATGACTAAGGCGGAGGGGGGC
GAGGACCCGTCTAATCGCCGACAGGGCGTGGTTAAATCCCCTCTCTTTTT
CCCCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCCG
CAACGAAAACAGGAGCATCGGCATCATCATCATCATTATCGTCATCATCA
TCATCAGCTGGAGGAGTAGGAGGAAGAGGAGGATACAGCAGCAGCCCCAT
GGGATTCGAATCACCCGTCCTTTCCCTCTTCGGGTACGAGCATTCACGCC
AGCCCCATCATGCCATGGCCTCCCTCTTCGACAATTTCCCCCTGTCCACT
CTGGATGCCTCTTCTGCTGCTGGTGGTGCCTATTTCTTCCAACCCTCCCC
CACTGGCGCCGGTAATGTAAATGGAGGCGTTGATGGATACGGCTTCGAAT
TGCTACAGCAATCCTGGGTAGGGTCTCCTAAAGCTGCCCCCAAGCCTTTT
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGTCGAACAGCTGCAGTCG
CAATTCCCTGGGAGTTTGCAGCAGTTTTACCACAACCACCACCACCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAGTACAAAC
AAATGGCAGGAGGAAGAGAAGTAGGAGGAAGCGATGATGGAGAAAGAGGA
GGAGTAGTAGAAGTAGAAGGAAAAGGGAGGGAAGGAGGAGAAGGACGAGC
AGGGCTGATTTTCGGCTCTACTACTGCTTCTGGCTCTGATGATATTGTTG
ATATTGCTGGTGCTGCGACTGATGCTAAACAGCTCTTCAGTGGGATGACA
GCAAGCGCCGCGATGACCCCATCCTTCTATTCTTCCTTGATGCATGTCCC
TCCTCCCCCCTCTACTGTCGTACACCGTTCGTCGCTCTTCTACCCCACAA
AGCAGCAGCTACATCACCAGCAGTCCCAAAACGCGCACATGAAAAATAAT
CAGGCCTCGCAAGGCGGCCATCATCAGCAGCAACAGCTGATGGGTGGGGT
CGAAGCCTTCGGGATGATGCATGATTTGCACTAGATCTGTAGCAGTAGCC
TTCCACCCCTTCATCCCTCCCTCGCCTTTCCTTCCCACCAATCCCACTGC
ATACGAGCACACCCACCGACCACCACCAGTACGTATCACTTTCAATGAGA
CTAGCAAAGCCAATCTGAGACAGTCCGCTGGGGCGTATCCCGAGCTTGTC
TTCCCTCCAACTACACCACTATCATCAGCCTATATAAATATATTTTTACA
AGATGCATTTATGCATGCATAAGAGAGATGCATTCTTTCATGAACTTATT
TATTCATATTCCCGCTGTTACTACCTTGCCCGCGATCGCTCTCTCTTCTC
TTGCTATCGAGTCAGAGGAAATTCCAAAGAGAAGCAAATCCTGCGATGGT
GCGCGAAATTCACCAGAGAGAGGGAAGGAGTGAGTGAGGGAGATAGTGAG
AAAAAATGAGTGAGAGTAAGTGAAATTGATAGAAACAGAAGGAGGGGAAA
CCACGTACAGGAAAGGGCAAATGTATGTATGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GAG
back to top

protein sequence of NO24G00630.1

>NO24G00630.1-protein ID=NO24G00630.1-protein|Name=NO24G00630.1|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MSPMGLVVEKRRGCDGKGGAQSGGKKKRRMRDSTDIIAGADEDDEHQQHL
QEDDEEVEEEVELQENGENIAAGGYTAADKAVKGYSMLPLQRPMTKAEGG
EDPSNRRQGVVKSPLFFPTAAAAAAAAAAAAAAATKTGASASSSSLSSSS
SSAGGVGGRGGYSSSPMGFESPVLSLFGYEHSRQPHHAMASLFDNFPLST
LDASSAAGGAYFFQPSPTGAGNVNGGVDGYGFELLQQSWVGSPKAAPKPF
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVEQLQS
QFPGSLQQFYHNHHHQQQQQQQQQQQQQQLQYKQMAGGREVGGSDDGERG
GVVEVEGKGREGGEGRAGLIFGSTTASGSDDIVDIAGAATDAKQLFSGMT
ASAAMTPSFYSSLMHVPPPPSTVVHRSSLFYPTKQQLHHQQSQNAHMKNN
QASQGGHHQQQQLMGGVEAFGMMHDLH*
back to top
Synonyms
Publications