NO24G00600, NO24G00600 (gene) Nannochloropsis oceanica

Overview
NameNO24G00600
Unique NameNO24G00600
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3566
Alignment locationchr24:187296..190861 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:187296..190861 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G00600 vs. NCBI_GenBank
Match: EWM21116.1 (hypothetical protein Naga_100041g24 [Nannochloropsis gaditana])

HSP 1 Score: 863.2 bits (2229), Expect = 8.500e-247
Identity = 538/1095 (49.13%), Postives = 682/1095 (62.28%), Query Frame = 0 
Query:   79 QVPVSQGIITRGFKYHESGWWEDQDRGGVTEAEPVESNPEVYRSLLAYVSDARKEEIYRLNKLEPEIFDAAVLSYLFNLSRVRVAAIIQLKAAEVERRLQGTLYTEEDDIF-GEPDAA-GTAVKSNGKYGKGKGGGGKLADPSELLLLDDESGLETMEDLCRPLGYEPVEKEMLPIQAALQHALLVERMGLVGEEAEKMMKPFKDKVDDVTLDELISKLDKQTATIATENENIIYNTTWAYEEKNQDEVPDPLNGFKILERREEGVLEDPAFLQYHVWMGLEQERLGLLLAYLRVQHEKKGGGGRQERHPAVSLYEVKELDEATEQYGRKKRRCAELFALLRPVHEKRVA---LAKEEGRKEGEAEEG--AMKAMEEEERGLMKSIRQELGPRIVTMEELSETRERVVGEIKRLAARLRRGVLVQGVKSGEEEGRKEKLVKYMELLRDEAVAEVQEEGEGGKEEGRTAFEDVQWEVLQQHRRVLRSD---EALWGEAGREGGEAAAG---IENSVGGWGXXXXXXXXXXXXXXXXXXKTLYAEFSLSSSS----------------SLFLPSSPSSSSAMMTRISKRAFAMFLMDMHECQPLRDRVDPMEVAAELHALCTXXXXXXXXXXXXXEVMRLALEEGTGRSPSLPPXXXXXXVSSSEVRAVERLYQQDVAHTLSLLKEARIKALKASRIGGGKKGDVGVLRRYLVTLAVSGRLEALDRLNKEVLSGLLPQLTQAFRGKTEVTASAYSLLVEQLYGGKRIEAPAIAELAALAGRTEGWVEGILLKLMKTSQEEVGRGDVLMGAHPGRLAQRLVTQDCFQAGIRSKEGLKVVREEMIEAGGKVGGDDVREVEERWGLPVEVEE-----------------------GEEGGKEGQGIEERARAAKALLEHLRSDGGAYAEYVAAVKDRIVEEIEEELLDTVYDMSEDLRMELDPVLVDLKPREHYDVPSLKFRVLNDNEPSKGE--------EG------------------------------GEWGGGAAAEVEFCIQGCXXXXXXXXXXXXXTVVRDRTGRLRAASGKEEKARSWIRRAQRIDLRGDN 1084
            ++P++  +I RGFKYHE+GWWED D GGVTEAEPVE NPEVYRSLLAYVSDARKEEIYRL+KLEP+IFDA VLSYLFNLSR RVAAIIQLKAAEV+RRLQGTLYTEEDDIF G P+++         K G GK  G   +DP +LLLLD+ESG ET+EDLCRP G++P +KE L +QAAL+    V R+GL GEEA   +KPFK+K+D  +L+EL++KL++Q   IA   E  +Y T   YEEK  D+VPDP NGF+IL+RRE+ V+EDP FLQYH WMGLE ERL LLLA+L++Q++   GGG + RHPA   Y+ KEL+ AT  Y  ++R CA +FA LR VHE R+      K EG++E + E G   ++ +  EE  L+  +R+ L PRIV MEEL E R RV+ EI+ LAA  RRG+LV+G+K+ +   RKEKL +YME+L  EA A V+EE    +EE   + EDVQWE LQQHRR+LR D   +AL+ E G E   AA     ++  +G                       L A  +    S                 +   SS S +      +S +AF  F+ D+HE   LR RVDPMEVAAEL  +               +++ LA E   G    L         +  E+RAVER YQ++VA  L+ LKEAR+ ALKASR GG K G+   LRRYLV  AVS RL+A DR+N+ VLS LLP++ +AFRGK E  A+AY+LLVE++YGGK I A  +AE+A LA RTEGWVE  L+KL+K S +EV +G+++     G LA RL+TQDCF AGIRS  GLKV+REE++ A   +   DV+ VE  +GL V+ +E                        +   ++   I +RARAAKALL+HLR D   Y EY   V+DRIVEEIEE+LLDTVYDMS++L MELDP LVDLKPREHYD+PSLKFRVLNDNEP+  +        EG                              G+ GG      +F  +               TV+RD+TGRLRAAS  EE+ RSWIRR+++IDLR D+
Sbjct:   56 RIPIT--MIARGFKYHETGWWEDHDSGGVTEAEPVEGNPEVYRSLLAYVSDARKEEIYRLHKLEPDIFDAEVLSYLFNLSRTRVAAIIQLKAAEVKRRLQGTLYTEEDDIFDGAPNSSPDKDTAERRKPGVGKSSGP--SDPCDLLLLDEESGSETLEDLCRPPGWDPEDKEALFLQAALRQVQHVARLGLTGEEAAAALKPFKEKIDSASLEELVTKLEEQMEKIARRTEEEMYETVHPYEEKGLDQVPDPFNGFRILKRREQAVMEDPDFLQYHAWMGLELERLELLLAHLQLQNQ---GGGVKGRHPATP-YQRKELEHATRLYEERRRECAGMFARLRSVHEARLGHELKGKAEGKEEEQNETGEKELERLVAEETSLLDDVRKRLAPRIVEMEELEEARARVLREIQSLAAIRRRGLLVRGLKADDASERKEKLTEYMEMLLAEAQAAVREE----EEESAVSAEDVQWEALQQHRRILRQDSVGQALYKEFGAEVAHAALEQEVVDAILGAREEIVSARPASETPSSRQQQDALKAVMATERESKEREAAMQNYVRSLWGGIRWHSSASDALEATASVSLQAFTRFVGDVHESSGLRGRVDPMEVAAELQGVLA--NSSSAVSALLSDMVSLAQEGEEGNVSRL---------AHKEIRAVERGYQENVARELAALKEARVAALKASRGGGAKGGENEALRRYLVLAAVSSRLDAFDRVNQAVLSNLLPEVMRAFRGKQETVAAAYTLLVEEMYGGKAIGATGVAEVAGLARRTEGWVESTLVKLLKGSWDEVEKGEIMAQVDVGALASRLLTQDCFYAGIRSSPGLKVLREELLHAARNLDTADVKAVESDFGLSVDTDEVRTMVAGALEKPLKQHIEANIAMADALRRKDAPIRDRARAAKALLDHLRLDVN-YQEYAGPVRDRIVEEIEEDLLDTVYDMSDELGMELDPTLVDLKPREHYDIPSLKFRVLNDNEPAVSDRVRDGFIREGPVAEAKGAVNIPVWQPKGDLRDLTEPMDGKGQKGGVQQRRWKFAFKDASVPSAGRGAAKGGTVIRDKTGRLRAASPTEEQGRSWIRRSRKIDLRSDH 1126
The following BLAST results are available for this feature:
BLAST of NO24G00600 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21116.18.500e-24749.13hypothetical protein Naga_100041g24 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL042nonsL042Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR083ngnoR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004827NSK004827Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00600.1NO24G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|652111gene_7292Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100041g24gene9303Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00600.1NO24G00600.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00600 ID=NO24G00600|Name=NO24G00600|organism=Nannochloropsis oceanica|type=gene|length=3566bp
ATGCTCCGCTACGGCTTGAGACGCATAGCGGCAGTTGCTACGGCCGCCTC
GGCACAAGGCGGTGGGGCCTGCGCTTGTGCAGCGGGTCGGAGGAGAACGC
TGGTGGTGACACGCCATCAATCAAGTCGGGAGCTGCGGACGCTGACCAAG
ACAACCTTACCCTTCCTCCCCGCCTTTTCCTCCTTATCCTGCTACTCATC
ATCCTCATCATCATCATCATCTTTCCGCCTCTGTCAAGTGCCTGTTTCCC
AGGGAATTATAACCCGAGGGTTCAAGTATCACGAATCGGGGTGGTGGGAA
GATCAGGACAGGGGAGGCGTGACAGAGGCAGAGCCCGTTGAGAGCAATCC
CGAGGTCTACCGTTCCCTGCTTGCCTACGTCTCAGATGCTCGCAAAGAGG
AAATTTATAGGCTGAACAAGCTGGAACCGGAAATTTTTGACGCGGCGGTG
TTGTCATATTTGTTCAACCTGAGTAGGGTGAGGGTAGCGGCGATTATTCA
ATTGAAAGCTGCCGAGGTGGAGAGACGACTTCAAGGCACGTTGTACACTG
AAGAAGACGACATTTTCGGGGAGCCCGATGCCGCGGGTACTGCTGTAAAA
AGCAATGGGAAATATGGGAAGGGAAAGGGAGGGGGAGGGAAGTTGGCGGA
TCCGAGCGAGTTGTTGTTGTTGGATGACGAGTCCGGGTTAGAGACGATGG
AAGACTTGTGTCGGCCGCTGGGGTATGAGCCCGTGGAGAAGGAGATGCTG
CCTATTCAAGCGGCGTTGCAACACGCGTTGTTGGTTGAGAGGATGGGGTT
GGTAGGTGAGGAGGCGGAGAAGATGATGAAGCCGTTTAAGGACAAGGTGG
ATGACGTGACGCTTGATGAGTTAATTTCCAAGCTAGACAAACAGACGGCC
ACCATTGCCACGGAGAATGAAAATATCATCTACAACACCACCTGGGCGTA
CGAAGAGAAAAACCAAGACGAAGTCCCCGACCCTCTGAACGGGTTCAAGA
TCCTGGAGAGGAGGGAGGAGGGCGTGCTGGAAGACCCGGCCTTCCTTCAG
TACCACGTGTGGATGGGTCTCGAGCAAGAGCGACTGGGCCTCCTCCTCGC
TTATCTACGGGTGCAACACGAGAAGAAGGGGGGTGGAGGGAGGCAGGAAA
GGCACCCGGCGGTGTCGCTTTACGAGGTGAAGGAATTGGACGAGGCGACG
GAGCAATACGGGCGAAAGAAGAGAAGGTGCGCTGAGTTGTTCGCTCTCCT
GCGGCCGGTGCATGAGAAGAGGGTCGCCCTCGCGAAAGAGGAGGGAAGGA
AGGAAGGGGAGGCTGAGGAGGGGGCGATGAAGGCGATGGAGGAGGAGGAG
AGGGGGCTGATGAAGTCAATCAGGCAGGAACTAGGACCTCGAATAGTGAC
CATGGAAGAGTTAAGTGAGACGCGGGAGAGAGTGGTAGGGGAGATCAAGC
GGTTGGCAGCCCGGCTACGACGCGGGGTGCTGGTGCAGGGCGTGAAGAGT
GGGGAGGAGGAGGGGAGGAAGGAGAAGCTGGTCAAGTACATGGAGTTGTT
GCGGGACGAGGCCGTGGCGGAAGTCCAGGAGGAGGGGGAGGGAGGGAAGG
AGGAAGGGAGGACGGCGTTTGAAGATGTCCAGTGGGAGGTGCTGCAGCAG
CACAGGCGGGTGTTGAGGTCGGACGAGGCACTCTGGGGGGAGGCAGGGAG
GGAAGGAGGGGAGgtaggattggagcaggaggtgatagacgagattcttg
ggatgccggaggaggaggtggagggcttatttgaggagggagtgcatgga
tcggtggagattaatttggatagGCAGCAGCAGGCATTGAGAACTCTGTT
GGCGGCTGGGGGGGGAGGGAGGGCGGGAGGGAGGGTGGGAGGGAGGAAGC
GTTGCGGGAGTATGTCAAGACGTTGTATGCGGAGTTTTCGTTGTCGTCCT
CGTCCTCGCTCTTCCTCCCTTCCTCGCCCTCGTCTTCCTCCGCGATGATG
ACGAGGATTAGTAAGCGGGCGTTCGCGATGTTTCTGATGGACATGCACGA
GTGTCAACCCTTGCGTGATCGGGTGGACCCGATGGAGGTTGCAGCAGAAC
TGCACGCCCTCTGCACCTCCTCCTCCTCCTCCCCTTCCTCTTCCTCCTCT
TCTTTAGAAGTAATGAGGCTGGCCCTCGAGGAAGGGACGGGCAGGTCCCC
TTCCCTCCCTCCCTCCTCCTCCTCCTCTGAGGTCTCCTCCTCTGAGGTCC
GTGCCGTCGAACGTCTTTACCAGCAAGACGTGGCCCATACGCTCTCCCTT
CTCAAAGAAGCTCGCATCAAGGCCTTGAAAGCCTCGCGGATTGGGGGAGG
GAAGAAAGGCGATGTAGGTGTCTTGCGCCGGTACTTGGTGACGTTGGCGG
TGAGCGGTAGGTTGGAGGCATTGGACCGACTGAATAAAGAGGTACTCTCC
GGGCTACTGCCGCAGCTGACACAGGCATTCAGAGGGAAGACGGAGGTGAC
GGCATCGGCGTACTCCCTGTTAGTGGAGCAGCTGTACGGAGGGAAACGGA
TCGAAGCACCTGCAATTGCCGAGTTGGCAGCCCTGGCTGGGCGGACGGAG
GGGTGGGTGGAGGGAATACTGCTCAAGCTGATGAAGACTAGTCAGGAGGA
GGTAGGGAGGGGGGATGTGCTCATGGGGGCGCATCCGGGTAGGTTGGCGC
AACGGCTGGTAACGCAAGATTGCTTCCAGGCGGGAATCCGGTCGAAGGAG
GGGCTGAAGGTAGTGAGAGAGGAGATGATTGAGGCAGGGGGGAAGGTGGG
GGGAGATGACGTGAGAGAGGTGGAGGAGAGGTGGGGGCTGCCGGTAGAGG
TGGAGGAGgtgcgactactggcggccgatgctttggagaagacgattggt
tcgcatatagaaggaaatgcgtcggtctttgatgccttgagGGCGAGGAA
GGGGGGAAGGAGGGGCAGGGGATTGAGGAGCGAGCACGGGCAGCCAAGGC
GCTTTTGGAGCACTTGCGGTCGGACGGAGGGGCGTATGCAGAGTATGTGG
CCGCGGTAAAGGATCGGATCGTGGAGGAGATCGAGGAGGAGCTGCTTGAC
ACTGTCTACGATATGAGCGAGGACTTGCGGATGGAGCTGGACCCGGTATT
AGTGGACCTGAAGCCGAGGGAGCACTATGACGTGCCCTCGTTGAAGTTCC
GGGTTTTGAACGACAACGAACCGTCAgtaagtgacggggtgaggaggggt
ttcctcgaggaggggaggaggagggggtggtgggggagggagagctgtgg
aagcctcgggaggtgttgagggacttatccgcgtcagaggcgagtagAAA
GGGGAGGAAGGGGGCGAGTGGGGAGGGGGTGCAGCAGCGGAGGTGGAGTT
TTGCATTCAAGGATGCGGCGTTGCCGGGGGGGGAGCGGGAGGGGCGGAGG
GAGGGACGGTGGTCAGAGATCGGACGGGGAGGTTGAGGGCGGCGAGTGGG
AAGGAGGAGAAGGCGCGGAGCTGGATTAGGAGGGCGCAGAGGATTGATTT
GCGGGGAGATAATTAG
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protein sequence of NO24G00600.1

>NO24G00600.1-protein ID=NO24G00600.1-protein|Name=NO24G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1084bp
MLRYGLRRIAAVATAASAQGGGACACAAGRRRTLVVTRHQSSRELRTLTK
TTLPFLPAFSSLSCYSSSSSSSSSFRLCQVPVSQGIITRGFKYHESGWWE
DQDRGGVTEAEPVESNPEVYRSLLAYVSDARKEEIYRLNKLEPEIFDAAV
LSYLFNLSRVRVAAIIQLKAAEVERRLQGTLYTEEDDIFGEPDAAGTAVK
SNGKYGKGKGGGGKLADPSELLLLDDESGLETMEDLCRPLGYEPVEKEML
PIQAALQHALLVERMGLVGEEAEKMMKPFKDKVDDVTLDELISKLDKQTA
TIATENENIIYNTTWAYEEKNQDEVPDPLNGFKILERREEGVLEDPAFLQ
YHVWMGLEQERLGLLLAYLRVQHEKKGGGGRQERHPAVSLYEVKELDEAT
EQYGRKKRRCAELFALLRPVHEKRVALAKEEGRKEGEAEEGAMKAMEEEE
RGLMKSIRQELGPRIVTMEELSETRERVVGEIKRLAARLRRGVLVQGVKS
GEEEGRKEKLVKYMELLRDEAVAEVQEEGEGGKEEGRTAFEDVQWEVLQQ
HRRVLRSDEALWGEAGREGGEAAAGIENSVGGWGGREGGREGGREEALRE
YVKTLYAEFSLSSSSSLFLPSSPSSSSAMMTRISKRAFAMFLMDMHECQP
LRDRVDPMEVAAELHALCTSSSSSPSSSSSSLEVMRLALEEGTGRSPSLP
PSSSSSEVSSSEVRAVERLYQQDVAHTLSLLKEARIKALKASRIGGGKKG
DVGVLRRYLVTLAVSGRLEALDRLNKEVLSGLLPQLTQAFRGKTEVTASA
YSLLVEQLYGGKRIEAPAIAELAALAGRTEGWVEGILLKLMKTSQEEVGR
GDVLMGAHPGRLAQRLVTQDCFQAGIRSKEGLKVVREEMIEAGGKVGGDD
VREVEERWGLPVEVEEGEEGGKEGQGIEERARAAKALLEHLRSDGGAYAE
YVAAVKDRIVEEIEEELLDTVYDMSEDLRMELDPVLVDLKPREHYDVPSL
KFRVLNDNEPSKGEEGGEWGGGAAAEVEFCIQGCGVAGGGAGGAEGGTVV
RDRTGRLRAASGKEEKARSWIRRAQRIDLRGDN*
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Synonyms
Publications