NO24G00590, NO24G00590 (gene) Nannochloropsis oceanica

Overview
NameNO24G00590
Unique NameNO24G00590
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2518
Alignment locationchr24:184598..187115 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:184598..187115 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G00590 vs. NCBI_GenBank
Match: EWM21132.1 (hypothetical protein Naga_100041g25 [Nannochloropsis gaditana])

HSP 1 Score: 144.1 bits (362), Expect = 1.700e-30
Identity = 180/609 (29.56%), Postives = 263/609 (43.19%), Query Frame = 0 
Query:  121 SSASQPSSAILDEEEALNAALAIKLSKLRGFREVLDQKSRQLQLLEKEKEEREALLSPLLDQVDELKVQVARQRAEIEATHEESAQRSRCVEGEVAQLREEVKRQKAAGKMLEGMRRDYRLCQEHCEAFLTTLIRLSRRRRNRLQPPGSGGSIYRSSSLEKIAGEEDAVGVEQQALLDTFFPPSLTPSSTSIFTQSPLCSSPSRRIKNKDKEKGNSKGGRQRPLWTSLRVLVEEVVSLLGELHRSQSEATQARHEKQNLAQRVQEMEQDLGEVRXXXDEMKMVVEAHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERGDFLVGLVGRMKLLE----EGEDEEEGRAEGGVEEAE--GQSDVDEQARGATKTGRKRLFSSPDGSSSFSFLSLQRRIDKHLTHLMARLQLLHALHADATRDSHRREEELHALHQAL-----------KQLEEQKGDNVGAREICEQQQEQLQALAGRVKEYKVVVQEKDRNIMLLEGELMKNKERNERLGGIWRGAKLGGMEXGDCCSR-------GWRKRAL 706
            S ++ PS+  LDEEEALN  LA KL KLRGFR +LD +SR L  LE+EK   E       +QVD+L   V  + A+I+   E++A R + +E E+ QL+E+VK+Q+  GK  + +R++YRLCQEHCEAFLT L+  +RRR  +        +    + L +    ++AV VEQQALL+TFF  S   S+   F     CS     +++  +     KG   R LW SLR++VEEVV +L ++  + +      H ++ +AQ   E E+D    R XX+E ++++                                                                                                    R  FL+ L G+++ LE    EG  EE G+   G   AE  G   V +   G  K        S   S S    SLQR I  HL  L  RL     L  D+   S R+EEEL  L Q +           +++E +  ++  AR+ CE+Q + L +   +VK  K   ++  + I  LE +L   +  NERLG +    +L  +E      R        WR+RAL
Sbjct:    9 SRSAPPSADSLDEEEALNIDLASKLKKLRGFRRILDLRSRALHALEEEKARLE-------EQVDDLNQLVLTRDAKIKDLDEQNANRVKYMEKELEQLKEDVKKQRTDGKDFKNLRKEYRLCQEHCEAFLTALVHFNRRRHTQ--------NFDSKTLLGQEKSWDEAVYVEQQALLETFF-VSQRSSNLKNFRDEAPCS-----VRSGQQRINTHKG--TRLLWQSLRMVVEEVVKVLEQMRSAHA------HGRRAVAQ--AEEERDKIVARAXXNESRLLIALRELQETRSAVGALESVARTLRESMQELEGTRAALEEELRC----------------------------------------------------------RDAFLMSLTGKVQALEVVEVEGSTEEGGKGSLGAGRAEPGGTRSVPDFHSGDPKL-------SQSASESMDLESLQRIIYYHLDRLSERLL---RLGEDSHGGSDRQEEELGRLRQTVLDLQARNVDMGREVESRAQESADARKSCERQSKDLHSQMEQVKILKRAARDSAQKICSLEEDLSVARRENERLGRVLAQTEL-DVERERLRHRERQEETAAWRRRAL 517
The following BLAST results are available for this feature:
BLAST of NO24G00590 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21132.11.700e-3029.56hypothetical protein Naga_100041g25 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL042nonsL042Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR083ngnoR083Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004828NSK004828Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00590.1NO24G00590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598132gene_7291Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100041g25gene9304Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00590.1NO24G00590.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00590 ID=NO24G00590|Name=NO24G00590|organism=Nannochloropsis oceanica|type=gene|length=2518bp
ATTTGTCGACCTCCTATGTGAGAGCGCGGGCAGATGAGCGGAGCGCGATT
AAGCGCTGGGCTTTGGGGCGCTCTTGCTGGGAGCTACAAAGGTCTGGACC
ACGGCCATACATGTTTCTGCTGCTATCTTTGCGTATGTTAAATATGCCTG
AGGGTGTGGGGTCAGCCCCTGTCCTCTTTGGATCGTGCCCAGGTCGCCCG
GGTCATCCGACAAGTGTTACAATCAGCGATGAGCTTTTTGCTTCTGCACG
TCAAATCGGAGCACGCACAACACTCACACCACACCCATTACGATACGACC
ACAGGCTCAAGCAGCCAAGGCGCCGCAGGGGGACCAAGCTCATTGCGTCT
TTTTATTCTCCCGTGCGTGCCAACCCCCTCGCTGACCCACCCCTCGTAGA
GTCCCGCCGTGTTCTCCCCTCCAAGACACACCCCCAACCGGCCATGGACC
CCCTAACGCAACCCGCTCCCTCCTCCGCCTCCCAACCCTCCTCGGCAATT
CTCGACGAAGAAGAAGCTCTAAATGCTGCTTTAGCCATCAAACTCAGCAA
GCTCCGTGGATTCCGGGAGGTGCTCGACCAAAAATCCCGACAATTGCAAC
TACTTGAGAAGGAAAAGGAGGAACGAGAGGCCTTGTTAAGCCCCCTATTA
GACCAGGTAGACGAGCTTAAGGTTCAAGTGGCGCGACAGCGGGCAGAAAT
CGAGGCGACACATGAAGAAAGCGCACAACGTTCTAGATGTGTGGAGGGTG
AGGTGGCCCAATTAAGAGAGGAAGTGAAGCGACAAAAAGCAGCGGGCAAG
ATGTTGGAAGGGATGCGAAGGGATTATCGTCTGTGCCAAGAACATTGCGA
GGCTTTCTTGACGACACTGATCCGCTTGAGTCGTCGTCGTCGCAACAGAT
TGCAACCGCCAGGCAGCGGCGGCAGTATCTACAGGAGCAGTAGTCTTGAG
AAAATAGCAGGGGAGGAGGACGCGGTCGGGGTGGAGCAACAAGCCCTCCT
TGACACCTTCTTCCCTCCCTCCCTTACCCCATCTTCGACCTCCATATTCA
CACAATCTCCATTGTGCTCCTCCCCCTCCCGAAGAATAAAGAACAAAGAC
AAAGAGAAGGGAAATTCCAAGGGCGGGCGTCAGCGCCCGCTTTGGACTTC
TCTCCGTGTCCTCGTCGAAGAAGTCGTCTCCCTTCTGGGCGAGCTCCACC
GCAGCCAGTCTGAAGCAACACAAGCACGGCACGAGAAACAAAACTTGGCC
CAGCGTGTGCAGGAAATGGAACAAGATTTGGGAGAAGTGAGGGGGGAAGT
TGACGAGATGAAGATGGTGGTAGAGGCACACTCCCTCCGAGCGGAGGCGG
CAGAGGACGACCTCCTCCACGCCAGGACAGAGGTAGACTCGATGCGTGCA
GTGATGGGACACGAAAATCAACGTGCCTGCGAAGCGGAGGAAAAGATGGA
GGAGATGAGGGGGCTCATAAAGGCACATGCCTCGCGGACAGAGGCAGCAG
AAAATGAATTGAGAGAGACGAGGCTTCTGGTGGGGGAGTTGGAATCACTA
GCGGGACACTTAAGGGAGAGCGTGGAGGGGCTTGAGGGGGCGAGGGAACA
ACTGAACTCAGAATTAAAAGAGAGGGGTGACTTCTTGGTGGGGCTGGTCG
GGAGGATGAAGCTTCTGGAGGAGGGTGAGGATGAGGAGGAAGGGAGGGCG
GAAGGTGGGGTGGAGGAGGCGGAGGGCCAAAGCGATGTTGATGAGCAAGC
ACGGGGCGCAACGAAGACAGGTCGTAAGCGACTCTTCTCTTCCCCTGACG
GTTCCTCCTCTTTCTCGTTCCTAAGCCTCCAACGCCGCATCGACAAACAC
CTCACTCACCTCATGGCCCGGCTTCAGCTGCTGCACGCGCTGCACGCGGA
CGCCACCCGCGACAGCCATCGCCGTGAAGAGGAACTCCACGCCCTCCACC
AGGCCCTCAAGCAACTAGAAGAACAAAAGGGTGACAATGTGGGAGCAAGG
GAGATCTGCGAGCAACAGCAGGAGCAGCTGCAGGCTTTGGCGGGGCGGGT
AAAGGAGTACAAGGTGGTGGTGCAGGAGAAAGACCGAAACATAATGTTGC
TCGAGGGGGAGTTGATGAAAAATAAGGAGAGAAATGAGAGGCTAGGGGGG
ATTTGGCGAGGTGCCAAGCTGGGAGGGATGGAGAGAGGAGATTGCTGCAG
CAGAGGGTGGAGGAAGCGGGCGCTTGGAAGAGACAAGCGCTCAAACTGCA
GAGGGAAGTAGGGGAGTGGCATGAGAAAATGAAGATGGGTGGTATCTGGA
GTGCAGGTGCTGCTAGAGCTGGTGCTGGTGCTGGTGTCGGACATGGATTC
GGAAGTAGTAGTAGCAGCAGCAGCAACAACGGCAGACGATTTTGGTGAGT
GATGAAAGGTCAAGAAGAGGTGGGGCAGGTGTGAAATATTGTAGATGAGT
GGAGGTCGGGGTGGAGGAGGAGGAGAAGAGGGAAATATTGCCGAAAATTA
ATGAGATGAATATAATAA
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protein sequence of NO24G00590.1

>NO24G00590.1-protein ID=NO24G00590.1-protein|Name=NO24G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=717bp
MFLLLSLRMLNMPEGVGSAPVLFGSCPGRPGHPTSVTISDELFASARQIG
ARTTLTPHPLRYDHRLKQPRRRRGTKLIASFYSPVRANPLADPPLVESRR
VLPSKTHPQPAMDPLTQPAPSSASQPSSAILDEEEALNAALAIKLSKLRG
FREVLDQKSRQLQLLEKEKEEREALLSPLLDQVDELKVQVARQRAEIEAT
HEESAQRSRCVEGEVAQLREEVKRQKAAGKMLEGMRRDYRLCQEHCEAFL
TTLIRLSRRRRNRLQPPGSGGSIYRSSSLEKIAGEEDAVGVEQQALLDTF
FPPSLTPSSTSIFTQSPLCSSPSRRIKNKDKEKGNSKGGRQRPLWTSLRV
LVEEVVSLLGELHRSQSEATQARHEKQNLAQRVQEMEQDLGEVRGEVDEM
KMVVEAHSLRAEAAEDDLLHARTEVDSMRAVMGHENQRACEAEEKMEEMR
GLIKAHASRTEAAENELRETRLLVGELESLAGHLRESVEGLEGAREQLNS
ELKERGDFLVGLVGRMKLLEEGEDEEEGRAEGGVEEAEGQSDVDEQARGA
TKTGRKRLFSSPDGSSSFSFLSLQRRIDKHLTHLMARLQLLHALHADATR
DSHRREEELHALHQALKQLEEQKGDNVGAREICEQQQEQLQALAGRVKEY
KVVVQEKDRNIMLLEGELMKNKERNERLGGIWRGAKLGGMERGDCCSRGW
RKRALGRDKRSNCRGK*
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Synonyms
Publications