NO24G00560, NO24G00560 (gene) Nannochloropsis oceanica

Overview
NameNO24G00560
Unique NameNO24G00560
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2778
Alignment locationchr24:175551..178328 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:175551..178328 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G00560 vs. NCBI_GenBank
Match: EWM21130.1 (hypothetical protein Naga_100041g18 [Nannochloropsis gaditana])

HSP 1 Score: 537.0 bits (1382), Expect = 6.400e-149
Identity = 302/487 (62.01%), Postives = 346/487 (71.05%), Query Frame = 0 
Query:    1 MTLLLLQRIRRGHAALETTEPVASSASSLSSFSFTPRP-SRASYHMTTF---VATTLMGLLLALQLMPEACAWRV-PFSPASCMQCTPPRTSLSRTTPLYSTLPDQQQPXXDEKGICXXXXXXXEAAVQTSPSLVQVQSFSPFLGRQKRRPGLLFEEEIDFCLAIPTLEGVSVGNSNVEISKVVNTFANQAAKKILIGFDCCFGDLADAVKERLRAEYLEGGGEREDPNGGESRMVVEGACGFIDAVAALSPCSDLKVSTTKAALLPAYSEAYMRVIDTLISNNCEFRSISASTPSSEVGTTPSNDGDLKILPRDRDICLSLYDTITGAQTKTKILNKISNRVSRTMLYGDEDDVAKLTTELTTGKASFVDEWLDGEAERGCDESVYYDSLISHLTGGLEAPAPAAMGGGYSNAYQRFITLLVQELGTRSASVDPEMFDAFVRWESTLRKNLTQDMWDPHPKELTGQWTLMDSGPNPGSAAMATSGG 483
            M+LL  Q  R G  AL  T   ASSAS L+      RP  R    +TT    VA T+  +LLA+  M    AWRV P    S +     R  +   TPL+++ P    P                +A + +PS V VQSFSPFLGRQ+RRPGLLFEEEIDFCLA P+LEGVSVGNS VEI+KVVNTF NQAAKKILIGFDCCFG++AD VK+RLR ++L G     D    E R  VEGAC FIDAV ALSPCSDL+V+ TK AL+P Y++AY RV+DTL+SN+CE R   +S  S+   T P +   LK+ PRDRDICLSLYDTITGA TKTK+LN ISNRVSRTMLY DEDDVAKLT ELT GK  F+++W+ G  E GCDE+VYY +LI++LTGGLEAPAPAAMGGGYSNAYQRF T LVQELGTRSASVDPEMFDAFVRWESTLRKNLTQDMWD HPKELTGQWTL+DSGPNP  A      G
Sbjct:    1 MSLLQKQGRRLGGKALRATRDAASSASPLA------RPWCRLPSDLTTTRSQVAATIFAVLLAVLKMESVGAWRVLPIGIPSGVSKMGSR--VGHPTPLFTSPPQNVLP--------DPPLQEDSSASEITPSPV-VQSFSPFLGRQRRRPGLLFEEEIDFCLAAPSLEGVSVGNSRVEIAKVVNTFVNQAAKKILIGFDCCFGEVADGVKDRLRTDFLSG-----DEASAEDRTCVEGACAFIDAVVALSPCSDLEVNATKGALVPPYTQAYARVLDTLLSNDCELRHSDSSALSTTASTDPPSP-PLKVRPRDRDICLSLYDTITGAPTKTKVLNTISNRVSRTMLYADEDDVAKLTNELTKGKPGFLEKWVGG--EEGCDEAVYYGALIAYLTGGLEAPAPAAMGGGYSNAYQRFTTSLVQELGTRSASVDPEMFDAFVRWESTLRKNLTQDMWDRHPKELTGQWTLVDSGPNPAGATTLPGPG 462
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BLAST of NO24G00560 vs. NCBI_GenBank
Match: CBJ25993.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 129.8 bits (325), Expect = 2.400e-26
Identity = 96/325 (29.54%), Postives = 145/325 (44.62%), Query Frame = 0 
Query:  150 FEEEIDFCLAIPTLEGVSVGNSNVEISKVVNTFANQAAKKILIGFDCCFGDLADAVKERLRAEYLEGGGEREDPNGGESRMVVEGACGFIDAVAALSPCSDLKVSTTKAALLPAYSEAYMRVIDTLISNNCEFRSISASTPSSEVGTTPSNDGDLKILPRDRDICLSLYDTITGAQ-----TKTKILNKISNRVSRTMLYGDEDDVAKLTTELTTGKASFVDEWLDGEAERGCDESVYYDSLISHLTGGLEAPAPAAMGGGYSNAYQRFITLLVQELGTRSASVDPEMFDAFVRWESTLRKNLTQDMWDPHPKELTGQWTLMDSG 470
            F  E++FCL     + V  G S   + K +NT  N+  K +LI       D   A+++ L+ E        E P           A  ++  V  L+         T  AL   Y  A+ RV   L    C                TP +D   +I P D+DICLS+ D    A+     T T+ LN + NRV RT+  G ++D+  L  E+ +    F+ +     + +G  E ++Y +L++ +  GL      A+ G Y N+YQR + +LVQE+GTRS      +  +F+ WE  +RK LT+  W   P +L G W L  SG
Sbjct:   34 FMGELNFCLG--PSDSVLSGPS---LLKDLNTATNKIVKNLLILNSP--EDSEPAMRDALKIEADFDAQHSESPQ-------YPAAKAYLSCVRQLA-IEGCPAVETLDALSEVYKPAFRRVAGALSDFGCTI--------------TPGDDSAGRIRPVDKDICLSILDYAVPAREQEGTTPTRALNTLVNRVVRTVCVGSDEDLQALAREMESKHNKFMTKCFGKGSWQGTQEDMFYHALVNLVKNGLTDEGVPALSGAYLNSYQRLMGILVQEVGTRSTPASEMVLKSFLAWEREIRKELTEPAWKSRPSDLVGSWALNTSG 329
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BLAST of NO24G00560 vs. NCBI_GenBank
Match: EJK77799.1 (hypothetical protein THAOC_00345 [Thalassiosira oceanica])

HSP 1 Score: 65.5 bits (158), Expect = 5.400e-7
Identity = 50/183 (27.32%), Postives = 78/183 (42.62%), Query Frame = 0 
Query:  326 TKTKILNKISNRVSRTMLYGDEDDVAKLTTELTTGKASFVDEWLDGEAERGCDES-------VYYDSLIS-----HLTGGLEAPAPA-AMGGGYSNAYQRFITLLVQELGT------------------------RSASVDP----EMFDAFVRWESTLRKNLTQDMWDPHPKELTGQWTLMD 468
            T T+ LN +SN V RT+++G + ++  L   +   K +F+  W  G++    D          Y +SLI      +  G L    P   +  GY N+Y R    L+ ELG+                         S++  P    E  + F +WEST+RKN      +P+P +L G WT+ D
Sbjct:  429 TMTRQLNVLSNIVQRTLIFGGDQELLVLAETMDADKPAFIQRWYSGDSAEVADRMNETRSGVQYLNSLIQLLRDCYTKGVLRNVEPTLPLSSGYKNSYSRLTASLI-ELGSGYVRPSASSSLSLALTTXAATAQYLSSTTPPKSAREELNRFAQWESTVRKNRA----NPYPDDLVGTWTVED 606
The following BLAST results are available for this feature:
BLAST of NO24G00560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM21130.16.400e-14962.01hypothetical protein Naga_100041g18 [Nannochlorops... [more]
CBJ25993.12.400e-2629.54conserved unknown protein [Ectocarpus siliculosus][more]
EJK77799.15.400e-727.32hypothetical protein THAOC_00345 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004823NSK004823Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00560.1NO24G00560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598123gene_7288Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100041g18gene9298Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00560.1NO24G00560.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00560 ID=NO24G00560|Name=NO24G00560|organism=Nannochloropsis oceanica|type=gene|length=2778bp
AAGCAAAGAGAGGAATGGTGGGTGGTCGAGAGACTTGTGATTGGATGGGC
TGTACACCATGTGGGTAACAACATTACGGTCCCACTCCAGCCCCAACACC
AAGGCCAAGCTATATTTTTGGTGACGGGGCGTACCCATGGGTGGTCTTGA
TGAGCTATCTGTGCTTAACCATGGCTGTAGAAAAAAACTACGGCGGCGAT
CATCTTCGTTTTTTTGGCCCCGTACGCCGTGCTTCAGCACGATTTTCCTG
CTTGGACAGACTAAGCACAAAATTGTAGATTTCCTTCGATTACGCGGAGC
GATGCGCATGCTTTCTCTACTGTAAAGTGACTCTCAATAGACCCATAGGT
GGCACCATCAACCTGATACGTTTGTCATCATCGGCGGCCCGCACGAGCCC
TTGGCACACGACTTGTCTGATCTTTGCGATGCATACACTCTTTCTCCTTC
CAATTGTACGAACCCCTCCCACAAACAGAACCATACAGCAGGCGGCCGCC
TTGGTTCCGCTGTTGCGAACGCCGGAGGAATGACCTTATTACTCTTGCAA
AGGATAAGGCGGGGACATGCGGCACTGGAGACGACAGAGCCCGTCGCCAG
CTCAGCCTCCTCCCTCTCCTCCTTCTCCTTTACCCCTCGTCCAAGCCGGG
CCTCCTACCACATGACCACCTTCGTTGCTACCACGCTGATGGGGCTGCTC
CTTGCCCTACAGCTGATGCCGGAGGCCTGCGCCTGGCGCGTCCCATTCTC
CCCTGCATCCTGCATGCAGTGCACCCCCCCCCGCACCAGTCTCAGCCGGA
CCACGCCCCTCTACTCCACCCTCCCCGACCAGCAGCAGCCACCACAAGAT
GAAAAGGGCATCTGCAGCAGTACTAGCAGCAGCAGTGAGGCAGCCGTCCA
GACATCTCCCTCACTAGTCCAAGTGCAAAGCTTCAGTCCCTTCCTCGGGC
GACAAAAGAGAAGACCCGGCTTACTCTTCGAGGAGGAAATTGACTTCTGC
CTCGCTATCCCTACTTTGGAAGGGGTAAGCGTGGGTAATAGTAATGTGGA
GATTTCCAAGGTCGTTAACACTTTCGCTAACCAAGCAGCTAAGAAGATTC
TGATCGGTTTTGACTGTTGCTTTGGGGATCTTGCCGATGCAGTCAAGGAG
AGATTAAGAGCGGAGTATTTGGAAGGTGGGGGAGAGAGAGAAGATCCGAA
TGGAGGAGAGTCAAGAATGGTGGTGGAGGGGGCGTGTGGGTTTATTGATG
CGgtacgttttgtaaaatgggttggaaggagggatacggggggaaaggag
ggaggattggtagtggagctacttcataatggtgtcctgtcgatttcatt
catggctttatcgtttctggtctcgtatggtctgtgcttctatccatatt
tcacgccttgcattgaattgcatctgtctcaagcgaccctccccctgtta
tcctcacttcccttcgtccccaccatccgtccctccatctctagGTCGCC
GCCCTCTCCCCCTGCTCCGACCTGAAGGTCAGCACTACGAAAGCAGCCCT
CCTTCCCGCCTATAGCGAAGCTTACATGCGTGTTATTGACACCCTCATCA
GCAACAACTGCGAATTCCGGTCTATTTCTGCTTCCACCCCATCCTCGGAA
GTAGGCACAACGCCCTCAAACGACGGGGACCTGAAGATTTTGCCGCGAGA
TCGTGATATTTGCTTGTCTTTATATGATACCATCACAGGCGCCCAAACCA
AGACCAAAATTTTAAACAAAATTTCGAATCGCGTTTCCCGGACCATGCTC
TATGGTGATGAGGACGATGTCGCAAAGCTCACAACTGAGCTAACGACGGG
CAAAGCCTCTTTTGTCGATGAGTGGTTGGACGGAGAGGCCGAGAGAGGAT
GTGACGAGTCCGTGTATTATGATTCGTTGATCTCGCATCTGACAGGAGGG
TTGGAGGCTCCGGCGCCGGCGGCGATGGGAGGGGGCTATAGTAACGCGTA
TCAACGCTTTATAACTTTGTTGGTGCAGGAACTGGGGACGCGCTCGGCAT
CAGTTGATCCAGAGATGTTTGACGCCTTTGTCCGGTGGGAGAGTACTCTA
AGGAAAAATCTGACGCAGGATATGTGGGACCCGCACCCGAAAGAACTGAC
TGGGCAGTGGACGCTGATGGACAGTGGTCCTAATCCTGGAAGTGCGGCGA
TGGCGACATCTGGGGGGGTTCGGCGGGCAGTAAGAACAAAGGAAAGTTGC
GCACGGCGAACTTAGTGTTTCGACGTGACGGGACTTTGAGGGTACCGCCG
GAGTTGGGCTTGGATGGCTCCTGGAGTTTTGAACCGGGGCCAACGCATTT
GGATACGATTCGGTTTGAGCTCCGGTTGGGGACGCCGGACAATCGCGTGC
TGGCGTATACGGGGTATGTGGATCGGGGACAGCGGATCGAGACAAGGTTT
TCAAAGAGGCCGATCAAAATGAAGGGACGAGTAGTCTTGCGGGTTAGGGG
AGAGCCGAGGTCGAGTAGTAAGTTCACGATGGAATTGTGTAAGAAGAATA
TGCTACTTGAAAACTTGGTCGTAGGCTCCACGCGGGGCACGCTGCAAGAG
TAAGTGTGACGTAAAAAGTAGAAGTGATAGAGGGGGTCATGTAAAAAGGT
ATATTTTAGGTGGCGCGCGAATCGCGAAAGCATTAGTCGTGGACTTTTCC
ATGGCCACTAGTAAACAGCCGATGCAAGCGAACAAAAGAAGGACAAAAGA
ACGGCGAATAATACTGTTCCAAAGATTG
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protein sequence of NO24G00560.1

>NO24G00560.1-protein ID=NO24G00560.1-protein|Name=NO24G00560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=498bp
MTLLLLQRIRRGHAALETTEPVASSASSLSSFSFTPRPSRASYHMTTFVA
TTLMGLLLALQLMPEACAWRVPFSPASCMQCTPPRTSLSRTTPLYSTLPD
QQQPPQDEKGICSSTSSSSEAAVQTSPSLVQVQSFSPFLGRQKRRPGLLF
EEEIDFCLAIPTLEGVSVGNSNVEISKVVNTFANQAAKKILIGFDCCFGD
LADAVKERLRAEYLEGGGEREDPNGGESRMVVEGACGFIDAVAALSPCSD
LKVSTTKAALLPAYSEAYMRVIDTLISNNCEFRSISASTPSSEVGTTPSN
DGDLKILPRDRDICLSLYDTITGAQTKTKILNKISNRVSRTMLYGDEDDV
AKLTTELTTGKASFVDEWLDGEAERGCDESVYYDSLISHLTGGLEAPAPA
AMGGGYSNAYQRFITLLVQELGTRSASVDPEMFDAFVRWESTLRKNLTQD
MWDPHPKELTGQWTLMDSGPNPGSAAMATSGGVRRAVRTKESCARRT*
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Synonyms
Publications