NO24G00540, NO24G00540 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO24G00540 vs. NCBI_GenBank
Match: EWM21121.1 (cleavage stimulation factor subunit 2 [Nannochloropsis gaditana]) HSP 1 Score: 308.9 bits (790), Expect = 1.900e-80 Identity = 153/172 (88.95%), Postives = 162/172 (94.19%), Query Frame = 0 Query: 1 MSGDSKWQIFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTITPNGGVTGKNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIVHMQVKIGMIKPLTRASDQ 173 MSGDSKWQIFIGNVSSSTTDE+LRQVFST G+VVNVRVMTDRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTI P GGVTGK+L+GVL F L DMYDMIAHLK+VAE KP+ELRLLLISHPQI EAI+HMQVKIGMI+PL RA+DQ Sbjct: 1 MSGDSKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTGKSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIRPLARAADQ 172
BLAST of NO24G00540 vs. NCBI_GenBank
Match: CBN77571.1 (similar to CG7697-PA [Ectocarpus siliculosus]) HSP 1 Score: 129.8 bits (325), Expect = 1.600e-26 Identity = 65/161 (40.37%), Postives = 111/161 (68.94%), Query Frame = 0 Query: 6 KWQIFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTD--RGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTITPNGGVTGKNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIVHMQVKIGMIK 165 K +F+GN+ TT+E+L ++FS G +V++R++ D G P KG+AFVEY++ TAL+AI+NL + +GR LRV FSNNS L A +QRG + ++GV+ + +++D+++++K++ E +P++ + + +SHPQ+AEA++HMQV++GM K Sbjct: 8 KNDVFVGNIPFGTTEEQLHEIFSEAGGIVSIRLVLDFETGKP-KGFAFVEYEDAATALSAIRNLNGYDCNGRLLRVNFSNNSSLGA-EQQRG----EKAPQQERTVKGVVMQMGIYEVWDIVSNMKQLVEKEPDKAKQMFVSHPQVAEALLHMQVRLGMFK 162
BLAST of NO24G00540 vs. NCBI_GenBank
Match: GAX16304.1 (cleavage stimulation factor subunit 2 [Fistulifera solaris]) HSP 1 Score: 120.9 bits (302), Expect = 7.500e-24 Identity = 75/188 (39.89%), Postives = 115/188 (61.17%), Query Frame = 0 Query: 2 SGDSKWQIFIGNVSSSTTDERLRQVFSTVGHVVNVRVMT--DRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTIT----------------PNGGVTGKNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIVHMQVKIGMIK-PLTRAS 171 S K IF+GN++ +TT+E+L Q FS +G V+NVR++T D G P +G+AFVE+ + AL+AI+N+ + E++GRRLRV FSN+S LE +A + G+ ++ P+ G + + L ++MYD++A LKE+ EE R LL SHPQ+ EAI+ K+ M+K P+T A+ Sbjct: 28 SSGPKNDIFVGNLAFNTTEEQLHQAFSDIGRVINVRLVTDVDTGKP-RGFAFVEFQDAQAALSAIRNMNDYELNGRRLRVNFSNSSHLEDLAGKLGMDLSQAKRQQQNQQVGTLAAPSPGTSA--VAEALKAMSKAEMYDVVAKLKEL---DAEEARRLLASHPQLPEAILFCMSKLDMVKTPVTTAA 209
BLAST of NO24G00540 vs. NCBI_GenBank
Match: GAX28829.1 (cleavage stimulation factor subunit 2 [Fistulifera solaris]) HSP 1 Score: 119.0 bits (297), Expect = 2.800e-23 Identity = 74/181 (40.88%), Postives = 109/181 (60.22%), Query Frame = 0 Query: 6 KWQIFIGNVSSSTTDERLRQVFSTVGHVVNVRVMT--DRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIA----------------KQRGLTITPNGGVTGKNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIVHMQVKIGMIK-PLT 168 K IF+GN++ +TT+E+L Q FS +G V+NVR++T D G P +G+AFVE+ + AL+AI+N+ + E++GRRLRV FSN+S LE +A +Q G P G + + L ++MYD++A LKE+ EE R LL SHPQ+ EAI+ K+ M+K P+T Sbjct: 30 KNDIFVGNLAFNTTEEQLHQAFSDIGRVINVRLVTDVDTGKP-RGFAFVEFQDAQAALSAIRNMNDYELNGRRLRVNFSNSSHLEDLAGKLGMDLSQAKRQQQNQQVGTNAAPTPGTSA--VADALKAMSKAEMYDVVAKLKEL---DAEEARRLLASHPQLPEAILFCMSKLDMVKTPVT 204
BLAST of NO24G00540 vs. NCBI_GenBank
Match: OQR95383.1 (hypothetical protein THRCLA_07918 [Thraustotheca clavata]) HSP 1 Score: 106.3 bits (264), Expect = 1.900e-19 Identity = 61/169 (36.09%), Postives = 99/169 (58.58%), Query Frame = 0 Query: 9 IFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTITPNGGVTG----KNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIV--HMQVKIGMIKPLTRAS 171 +F+GN+ T++ LR++FS G V+N R++TDR K KGY F EY + TAL+A++NL E++GR LRV F++ + + R GVTG K++E +A +YDM+ +E A TKPE + LL ++P +A AI+ + + I ++K T+++ Sbjct: 20 VFVGNIPYDVTEDMLREIFSEAGPVLNFRLVTDRETGKPKGYGFCEYGDGATALSAMRNLNGYEINGRNLRVDFADGGERQGTDRDR------QSGVTGEAIIKSIEAAIAAQGRVALYDMLVQFREYARTKPEMTKTLLNANPVLAHAIIESYKMINIQLLKTPTQST 182
BLAST of NO24G00540 vs. NCBI_GenBank
Match: XP_008609764.1 (hypothetical protein SDRG_05804 [Saprolegnia diclina VS20] >EQC36983.1 hypothetical protein SDRG_05804 [Saprolegnia diclina VS20]) HSP 1 Score: 104.4 bits (259), Expect = 7.200e-19 Identity = 59/151 (39.07%), Postives = 89/151 (58.94%), Query Frame = 0 Query: 9 IFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTITPNGGVTG----KNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIV 155 +F+GN+ T+E LR++FS G VVN R++TDR K KGY F EY++ TAL+A++NL E++GR LRV F++ + + R GVTG K++E +A +YDM+ +E A KPE + LL ++P +A AI+ Sbjct: 14 VFVGNIPYDVTEEMLREIFSEAGPVVNFRLVTDRESGKPKGYGFCEYNDGATALSAMRNLNGYEINGRNLRVDFADGGERQGTDRDR------QSGVTGEAIIKSIEAAVAAQGRVPIYDMLVAFREYARAKPEMTKTLLNANPVLAHAII 158
BLAST of NO24G00540 vs. NCBI_GenBank
Match: XP_012205543.1 (hypothetical protein SPRG_10503 [Saprolegnia parasitica CBS 223.65] >KDO23725.1 hypothetical protein SPRG_10503 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 104.4 bits (259), Expect = 7.200e-19 Identity = 59/151 (39.07%), Postives = 89/151 (58.94%), Query Frame = 0 Query: 9 IFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTITPNGGVTG----KNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIV 155 +F+GN+ T+E LR++FS G VVN R++TDR K KGY F EY++ TAL+A++NL E++GR LRV F++ + + R GVTG K++E +A +YDM+ +E A KPE + LL ++P +A AI+ Sbjct: 14 VFVGNIPYDVTEEMLREIFSEAGPVVNFRLVTDRESGKPKGYGFCEYNDGATALSAMRNLNGYEINGRNLRVDFADGGERQGTDRDR------QSGVTGEAIIKSIEAAVAAQGRVPIYDMLVAFREYARAKPEMTKTLLNANPVLAHAII 158
BLAST of NO24G00540 vs. NCBI_GenBank
Match: OQR95313.1 (hypothetical protein ACHHYP_00110 [Achlya hypogyna]) HSP 1 Score: 103.2 bits (256), Expect = 1.600e-18 Identity = 63/169 (37.28%), Postives = 98/169 (57.99%), Query Frame = 0 Query: 9 IFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTITPNGGVTG----KNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIV--HMQVKIGMIKPLTRAS 171 +F+GN+ T+E LR++FS G VVN R++TDR K KGY F EY++ TAL+A++NL E++GR LRV F++ ++ G GVTG K++E +A +YDM+ +E A KPE + LL ++P +A AI+ + + I ++K T +S Sbjct: 14 VFVGNIPYDVTEEMLREIFSEAGPVVNFRLVTDRETGKPKGYGFCEYNDGATALSAMRNLNGHEINGRNLRVDFADG------GERTGTDRDRQSGVTGEAIIKSIEAAIAAQGRVALYDMLLAFREYAHVKPEMTKTLLNANPVLAHAIIESYKALNIHLLKAPTPSS 176
BLAST of NO24G00540 vs. NCBI_GenBank
Match: PKI84204.1 (hypothetical protein MVES_002149 [Malassezia sp. JP-2017]) HSP 1 Score: 102.4 bits (254), Expect = 2.800e-18 Identity = 53/169 (31.36%), Postives = 99/169 (58.58%), Query Frame = 0 Query: 9 IFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAK----------QRGLTITPNGGVTGKNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIVHMQVKIGMIKPL 167 +F+GN+ ++E+L VFS VG V R+++D+ K KGY F EY++ +TA +A++NL +VEV GR+LR+ F+++ + + + ++G + P T + +A+ P + + D++ +K ++ T PE+ R LL +PQ+A A+ H + + ++ PL Sbjct: 10 VFVGNIPYDISEEQLINVFSEVGRVAAFRLVSDKEQGKFKGYGFCEYEDVETAASAVRNLNDVEVGGRQLRLDFADSDPMVELERHTDARKPAGTEQGTPLPPGVSATDA-ITHAIASLPPNQLMDILTQMKSLSATSPEQARALLSGNPQLAYAVFHSMLMMNIVDPL 177
BLAST of NO24G00540 vs. NCBI_GenBank
Match: XP_020910588.1 (cleavage stimulation factor subunit 2-like [Exaiptasia pallida] >KXJ24390.1 Cleavage stimulation factor subunit 2 [Exaiptasia pallida]) HSP 1 Score: 100.5 bits (249), Expect = 1.000e-17 Identity = 57/174 (32.76%), Postives = 102/174 (58.62%), Query Frame = 0 Query: 9 IFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNS-------GLEAIAK----QRGLTITPNGGVTGKNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIVHMQVKIGMIKPLTRAS 171 +F+GN+ ++E+L+++FS VG VV+ R++ DR K KGY F EY + +TAL+A++NL E++GR LRV + + G+EA+A+ G + P G + + +A+ P M++++ +K + PEE R +L+ +PQ+A A++ QV + ++ P+ S Sbjct: 26 VFVGNIPYEASEEQLKEIFSEVGPVVSFRLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRALRVDSAASEKNKEEMRGIEAMARPDSSPHGPVVPP--GEAPEAITQAVASLPPEQMFELMKQMKICIQNNPEEARQMLLQNPQLAYALLQAQVVMKIVDPVIAQS 197 The following BLAST results are available for this feature:
BLAST of NO24G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO24G00540 ID=NO24G00540|Name=NO24G00540|organism=Nannochloropsis oceanica|type=gene|length=1316bpback to top protein sequence of NO24G00540.1 >NO24G00540.1-protein ID=NO24G00540.1-protein|Name=NO24G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=341bpback to top Synonyms
Publications
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