NO24G00540, NO24G00540 (gene) Nannochloropsis oceanica

Overview
NameNO24G00540
Unique NameNO24G00540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1316
Alignment locationchr24:171049..172364 +

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Properties
Property NameValue
DescriptionCleavage stimulation factor subunit 2
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:171049..172364 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR025742CSTF2_hinge
IPR000504RRM_dom
Homology
BLAST of NO24G00540 vs. NCBI_GenBank
Match: EWM21121.1 (cleavage stimulation factor subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 308.9 bits (790), Expect = 1.900e-80
Identity = 153/172 (88.95%), Postives = 162/172 (94.19%), Query Frame = 0
Query:    1 MSGDSKWQIFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTITPNGGVTGKNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIVHMQVKIGMIKPLTRASDQ 173
            MSGDSKWQIFIGNVSSSTTDE+LRQVFST G+VVNVRVMTDRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTI P GGVTGK+L+GVL  F L DMYDMIAHLK+VAE KP+ELRLLLISHPQI EAI+HMQVKIGMI+PL RA+DQ
Sbjct:    1 MSGDSKWQIFIGNVSSSTTDEKLRQVFSTAGNVVNVRVMTDRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTILPGGGVTGKSLDGVLTQFSLPDMYDMIAHLKDVAENKPDELRLLLISHPQIGEAIIHMQVKIGMIRPLARAADQ 172          
BLAST of NO24G00540 vs. NCBI_GenBank
Match: CBN77571.1 (similar to CG7697-PA [Ectocarpus siliculosus])

HSP 1 Score: 129.8 bits (325), Expect = 1.600e-26
Identity = 65/161 (40.37%), Postives = 111/161 (68.94%), Query Frame = 0
Query:    6 KWQIFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTD--RGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTITPNGGVTGKNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIVHMQVKIGMIK 165
            K  +F+GN+   TT+E+L ++FS  G +V++R++ D   G P KG+AFVEY++  TAL+AI+NL   + +GR LRV FSNNS L A  +QRG           + ++GV+    + +++D+++++K++ E +P++ + + +SHPQ+AEA++HMQV++GM K
Sbjct:    8 KNDVFVGNIPFGTTEEQLHEIFSEAGGIVSIRLVLDFETGKP-KGFAFVEYEDAATALSAIRNLNGYDCNGRLLRVNFSNNSSLGA-EQQRG----EKAPQQERTVKGVVMQMGIYEVWDIVSNMKQLVEKEPDKAKQMFVSHPQVAEALLHMQVRLGMFK 162          
BLAST of NO24G00540 vs. NCBI_GenBank
Match: GAX16304.1 (cleavage stimulation factor subunit 2 [Fistulifera solaris])

HSP 1 Score: 120.9 bits (302), Expect = 7.500e-24
Identity = 75/188 (39.89%), Postives = 115/188 (61.17%), Query Frame = 0
Query:    2 SGDSKWQIFIGNVSSSTTDERLRQVFSTVGHVVNVRVMT--DRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTIT----------------PNGGVTGKNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIVHMQVKIGMIK-PLTRAS 171
            S   K  IF+GN++ +TT+E+L Q FS +G V+NVR++T  D G P +G+AFVE+ +   AL+AI+N+ + E++GRRLRV FSN+S LE +A + G+ ++                P+ G +   +   L     ++MYD++A LKE+     EE R LL SHPQ+ EAI+    K+ M+K P+T A+
Sbjct:   28 SSGPKNDIFVGNLAFNTTEEQLHQAFSDIGRVINVRLVTDVDTGKP-RGFAFVEFQDAQAALSAIRNMNDYELNGRRLRVNFSNSSHLEDLAGKLGMDLSQAKRQQQNQQVGTLAAPSPGTSA--VAEALKAMSKAEMYDVVAKLKEL---DAEEARRLLASHPQLPEAILFCMSKLDMVKTPVTTAA 209          
BLAST of NO24G00540 vs. NCBI_GenBank
Match: GAX28829.1 (cleavage stimulation factor subunit 2 [Fistulifera solaris])

HSP 1 Score: 119.0 bits (297), Expect = 2.800e-23
Identity = 74/181 (40.88%), Postives = 109/181 (60.22%), Query Frame = 0
Query:    6 KWQIFIGNVSSSTTDERLRQVFSTVGHVVNVRVMT--DRGDPKKGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIA----------------KQRGLTITPNGGVTGKNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIVHMQVKIGMIK-PLT 168
            K  IF+GN++ +TT+E+L Q FS +G V+NVR++T  D G P +G+AFVE+ +   AL+AI+N+ + E++GRRLRV FSN+S LE +A                +Q G    P  G +   +   L     ++MYD++A LKE+     EE R LL SHPQ+ EAI+    K+ M+K P+T
Sbjct:   30 KNDIFVGNLAFNTTEEQLHQAFSDIGRVINVRLVTDVDTGKP-RGFAFVEFQDAQAALSAIRNMNDYELNGRRLRVNFSNSSHLEDLAGKLGMDLSQAKRQQQNQQVGTNAAPTPGTSA--VADALKAMSKAEMYDVVAKLKEL---DAEEARRLLASHPQLPEAILFCMSKLDMVKTPVT 204          
BLAST of NO24G00540 vs. NCBI_GenBank
Match: OQR95383.1 (hypothetical protein THRCLA_07918 [Thraustotheca clavata])

HSP 1 Score: 106.3 bits (264), Expect = 1.900e-19
Identity = 61/169 (36.09%), Postives = 99/169 (58.58%), Query Frame = 0
Query:    9 IFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTITPNGGVTG----KNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIV--HMQVKIGMIKPLTRAS 171
            +F+GN+    T++ LR++FS  G V+N R++TDR   K KGY F EY +  TAL+A++NL   E++GR LRV F++    +   + R        GVTG    K++E  +A      +YDM+   +E A TKPE  + LL ++P +A AI+  +  + I ++K  T+++
Sbjct:   20 VFVGNIPYDVTEDMLREIFSEAGPVLNFRLVTDRETGKPKGYGFCEYGDGATALSAMRNLNGYEINGRNLRVDFADGGERQGTDRDR------QSGVTGEAIIKSIEAAIAAQGRVALYDMLVQFREYARTKPEMTKTLLNANPVLAHAIIESYKMINIQLLKTPTQST 182          
BLAST of NO24G00540 vs. NCBI_GenBank
Match: XP_008609764.1 (hypothetical protein SDRG_05804 [Saprolegnia diclina VS20] >EQC36983.1 hypothetical protein SDRG_05804 [Saprolegnia diclina VS20])

HSP 1 Score: 104.4 bits (259), Expect = 7.200e-19
Identity = 59/151 (39.07%), Postives = 89/151 (58.94%), Query Frame = 0
Query:    9 IFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTITPNGGVTG----KNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIV 155
            +F+GN+    T+E LR++FS  G VVN R++TDR   K KGY F EY++  TAL+A++NL   E++GR LRV F++    +   + R        GVTG    K++E  +A      +YDM+   +E A  KPE  + LL ++P +A AI+
Sbjct:   14 VFVGNIPYDVTEEMLREIFSEAGPVVNFRLVTDRESGKPKGYGFCEYNDGATALSAMRNLNGYEINGRNLRVDFADGGERQGTDRDR------QSGVTGEAIIKSIEAAVAAQGRVPIYDMLVAFREYARAKPEMTKTLLNANPVLAHAII 158          
BLAST of NO24G00540 vs. NCBI_GenBank
Match: XP_012205543.1 (hypothetical protein SPRG_10503 [Saprolegnia parasitica CBS 223.65] >KDO23725.1 hypothetical protein SPRG_10503 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 104.4 bits (259), Expect = 7.200e-19
Identity = 59/151 (39.07%), Postives = 89/151 (58.94%), Query Frame = 0
Query:    9 IFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTITPNGGVTG----KNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIV 155
            +F+GN+    T+E LR++FS  G VVN R++TDR   K KGY F EY++  TAL+A++NL   E++GR LRV F++    +   + R        GVTG    K++E  +A      +YDM+   +E A  KPE  + LL ++P +A AI+
Sbjct:   14 VFVGNIPYDVTEEMLREIFSEAGPVVNFRLVTDRESGKPKGYGFCEYNDGATALSAMRNLNGYEINGRNLRVDFADGGERQGTDRDR------QSGVTGEAIIKSIEAAVAAQGRVPIYDMLVAFREYARAKPEMTKTLLNANPVLAHAII 158          
BLAST of NO24G00540 vs. NCBI_GenBank
Match: OQR95313.1 (hypothetical protein ACHHYP_00110 [Achlya hypogyna])

HSP 1 Score: 103.2 bits (256), Expect = 1.600e-18
Identity = 63/169 (37.28%), Postives = 98/169 (57.99%), Query Frame = 0
Query:    9 IFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTITPNGGVTG----KNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIV--HMQVKIGMIKPLTRAS 171
            +F+GN+    T+E LR++FS  G VVN R++TDR   K KGY F EY++  TAL+A++NL   E++GR LRV F++        ++ G       GVTG    K++E  +A      +YDM+   +E A  KPE  + LL ++P +A AI+  +  + I ++K  T +S
Sbjct:   14 VFVGNIPYDVTEEMLREIFSEAGPVVNFRLVTDRETGKPKGYGFCEYNDGATALSAMRNLNGHEINGRNLRVDFADG------GERTGTDRDRQSGVTGEAIIKSIEAAIAAQGRVALYDMLLAFREYAHVKPEMTKTLLNANPVLAHAIIESYKALNIHLLKAPTPSS 176          
BLAST of NO24G00540 vs. NCBI_GenBank
Match: PKI84204.1 (hypothetical protein MVES_002149 [Malassezia sp. JP-2017])

HSP 1 Score: 102.4 bits (254), Expect = 2.800e-18
Identity = 53/169 (31.36%), Postives = 99/169 (58.58%), Query Frame = 0
Query:    9 IFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAK----------QRGLTITPNGGVTGKNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIVHMQVKIGMIKPL 167
            +F+GN+    ++E+L  VFS VG V   R+++D+   K KGY F EY++ +TA +A++NL +VEV GR+LR+ F+++  +  + +          ++G  + P    T   +   +A+ P + + D++  +K ++ T PE+ R LL  +PQ+A A+ H  + + ++ PL
Sbjct:   10 VFVGNIPYDISEEQLINVFSEVGRVAAFRLVSDKEQGKFKGYGFCEYEDVETAASAVRNLNDVEVGGRQLRLDFADSDPMVELERHTDARKPAGTEQGTPLPPGVSATDA-ITHAIASLPPNQLMDILTQMKSLSATSPEQARALLSGNPQLAYAVFHSMLMMNIVDPL 177          
BLAST of NO24G00540 vs. NCBI_GenBank
Match: XP_020910588.1 (cleavage stimulation factor subunit 2-like [Exaiptasia pallida] >KXJ24390.1 Cleavage stimulation factor subunit 2 [Exaiptasia pallida])

HSP 1 Score: 100.5 bits (249), Expect = 1.000e-17
Identity = 57/174 (32.76%), Postives = 102/174 (58.62%), Query Frame = 0
Query:    9 IFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPK-KGYAFVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNS-------GLEAIAK----QRGLTITPNGGVTGKNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIAEAIVHMQVKIGMIKPLTRAS 171
            +F+GN+    ++E+L+++FS VG VV+ R++ DR   K KGY F EY + +TAL+A++NL   E++GR LRV  + +        G+EA+A+      G  + P  G   + +   +A+ P   M++++  +K   +  PEE R +L+ +PQ+A A++  QV + ++ P+   S
Sbjct:   26 VFVGNIPYEASEEQLKEIFSEVGPVVSFRLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRALRVDSAASEKNKEEMRGIEAMARPDSSPHGPVVPP--GEAPEAITQAVASLPPEQMFELMKQMKICIQNNPEEARQMLLQNPQLAYALLQAQVVMKIVDPVIAQS 197          
The following BLAST results are available for this feature:
BLAST of NO24G00540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM21121.11.900e-8088.95cleavage stimulation factor subunit 2 [Nannochloro... [more]
CBN77571.11.600e-2640.37similar to CG7697-PA [Ectocarpus siliculosus][more]
GAX16304.17.500e-2439.89cleavage stimulation factor subunit 2 [Fistulifera... [more]
GAX28829.12.800e-2340.88cleavage stimulation factor subunit 2 [Fistulifera... [more]
OQR95383.11.900e-1936.09hypothetical protein THRCLA_07918 [Thraustotheca c... [more]
XP_008609764.17.200e-1939.07hypothetical protein SDRG_05804 [Saprolegnia dicli... [more]
XP_012205543.17.200e-1939.07hypothetical protein SPRG_10503 [Saprolegnia paras... [more]
OQR95313.11.600e-1837.28hypothetical protein ACHHYP_00110 [Achlya hypogyna... [more]
PKI84204.12.800e-1831.36hypothetical protein MVES_002149 [Malassezia sp. J... [more]
XP_020910588.11.000e-1732.76cleavage stimulation factor subunit 2-like [Exaipt... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL041nonsL041Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR082ngnoR082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK004821NSK004821Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00540.1NO24G00540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598117gene_7286Nannochloropsis oceanica (N. oceanica CCMP1779)gene
CSTF64gene9296Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00540.1NO24G00540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00540 ID=NO24G00540|Name=NO24G00540|organism=Nannochloropsis oceanica|type=gene|length=1316bp
ATGTCGGGCGACTCGAAGTGGCAGATTTTCATCGGGAATGTAAGCAGCTC
CACCACGGATGAGAGATTGCGCCAGGTCTTCTCCACGGTGGGGCACGTGG
TGAATGTCCGCGTCATGACTGACCGCGGGGACCCTAAGAAAGgtgaggac
tcactcaccacaagcacacaagcacacaagcacatataatacgcggcgca
tgcatgttagcctccatgcttatacatcttactgtccgccactacaacct
tctctgggcccgcctcgtgattcctcgccaccgactcacgcttcccgctc
ctccctctcttcctccttctcaaacagGTTACGCCTTTGTGGAATATGAC
AACCCCGACACGGCACTTACAGCCATCCAAAACCTGGGCAATGTCGAAGT
GGATGGGCGGCGACTGCGTGTCGGCTTCAGCAACAACAGCGGATTGGAAG
CGATAGCAAAGCAACGCGGACTTACCATAACGCCTAACGGTGGGGTGACA
GGCAAAAATCTCGAAGGGGTACTCGCTAATTTCCCGTTGTCGGATATGTA
CGACATGATTGCGCATCTTAAAGAAGTGGCCGAGACCAAACCTGAAGAAC
TTCGCCTCCTCCTCATCTCGCACCCCCAAATCGCGGAAGCCATCGTCCAC
ATGCAAGTCAAGATCGGCATGATTAAGCCCCTGACTCGTGCCTCGGATCA
GCAACCTTACCAGCAACAACAGCATCAACAACAGCAGCAACAACAACCAC
TTCAACTGCAACCACCGGTACATCTAGGTGCCTTTGGCCATCAGCAGCAA
CAACAACAACAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCCGCACATTGGTGGGCTTGCGGCAGCTGGTGGATACTACCAAGCGC
AGCCCCCCTCTCATTTTACTCCTCAGCAAGCGGGAGGGTGGAGCGGACAG
ATGCCCCCCTTGCCACCGCCTGTGCCATTCGACCCTTCTGCAGCTGCGGG
TGCTGCTGGGGGTGGTGGAGGGGGTTTAGGCGCATTGGGAGCTCTGCTTG
CGGGCGGGAATCAGGCCATGGCGCAAGAAACGTTGCGGCAGGTGATGAGC
ATGACGCCGGAGCAATTGGCTGGAATGGAGCCAGGGCAGAGGCAGCTGAT
GATGGAATTGCAGCAGGCGGTATTGATGCAGACGCAGCAGGCTGGAGGGA
TGAGGTAGAGGGGAAGGAAAGAGGGAGGGAGAGCGGGCGGGCGGGCAGGT
GGAAGGAATGCTGGGAGAAGAGTACCATGGTAAGAATGAAAAATCTCAAT
TCGAAAGAACTTACAA
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protein sequence of NO24G00540.1

>NO24G00540.1-protein ID=NO24G00540.1-protein|Name=NO24G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MSGDSKWQIFIGNVSSSTTDERLRQVFSTVGHVVNVRVMTDRGDPKKGYA
FVEYDNPDTALTAIQNLGNVEVDGRRLRVGFSNNSGLEAIAKQRGLTITP
NGGVTGKNLEGVLANFPLSDMYDMIAHLKEVAETKPEELRLLLISHPQIA
EAIVHMQVKIGMIKPLTRASDQQPYQQQQHQQQQQQQPLQLQPPVHLGAF
GHQQQQQQQQQQQQQQQQQQQQQPHIGGLAAAGGYYQAQPPSHFTPQQAG
GWSGQMPPLPPPVPFDPSAAAGAAGGGGGGLGALGALLAGGNQAMAQETL
RQVMSMTPEQLAGMEPGQRQLMMELQQAVLMQTQQAGGMR*
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Synonyms
Publications