NO24G00440, NO24G00440 (gene) Nannochloropsis oceanica

Overview
NameNO24G00440
Unique NameNO24G00440
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2399
Alignment locationchr24:148809..151207 +

Link to JBrowse

Properties
Property NameValue
DescriptionFerredoxin (2fe-2s)
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:148809..151207 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
GO:0005488binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR0360102Fe-2S_ferredoxin-like_sf
IPR0010412Fe-2S_ferredoxin-type
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Homology
BLAST of NO24G00440 vs. NCBI_GenBank
Match: EWM24316.1 (ferredoxin (2fe-2s) [Nannochloropsis gaditana])

HSP 1 Score: 291.6 bits (745), Expect = 2.200e-75
Identity = 137/192 (71.35%), Postives = 160/192 (83.33%), Query Frame = 0
Query:   20 LAMLLIQTPNPSQAFLLPKIIRQGRVGDQQPQLRLRHAQIYSPTSLYALEPKRLTITEQLKFSPNRWKRNGEPLEPGYGGIWPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYK 212
            L ++L+   + SQAFL P I  Q     +  +   +  + +SP +L+A  PKRLT+TEQL+ SPNRWKRNG+PLEPG GGIWPG PDAK YKVTV+DPR+KTNYTMDVPEDRYIFFAFED+GVDLP++NGKRMCRNGCCTTCAVKM EGKVKMEAALGLLR+MK  GYAL+CCSLP+SDIVCELQDEDEVY+
Sbjct:    6 LLLVLLLLSSTSQAFLQPAI--QHEQNSKSHRSLFQQGRFHSPAALHASPPKRLTVTEQLQLSPNRWKRNGQPLEPGVGGIWPGKPDAKKYKVTVVDPRTKTNYTMDVPEDRYIFFAFEDSGVDLPMVNGKRMCRNGCCTTCAVKMKEGKVKMEAALGLLRDMKNKGYALSCCSLPRSDIVCELQDEDEVYE 195          
BLAST of NO24G00440 vs. NCBI_GenBank
Match: CBJ27792.1 (ferredoxin [Ectocarpus siliculosus])

HSP 1 Score: 219.2 bits (557), Expect = 1.400e-53
Identity = 100/155 (64.52%), Postives = 126/155 (81.29%), Query Frame = 0
Query:   79 LKFSPNRWKRNGEPLEPGYGGIWPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGG-FLPED 233
            +K+SPN+W  + + + PG+GGIWPG+PDA+T+ VT ++   +   + DVP DRYI+FA EDAGVD+P++N KRMCRNGCCTTCAVK+ EGKVK E ALGLL+++KQ GYALTCCS PKSD+V  LQ+ED+VY KQ+G  FEGGGVEWGG FL ED
Sbjct:   80 VKYSPNKW-WDEDDIVPGFGGIWPGDPDAETHHVTYVNKAGEEVASADVPVDRYIYFATEDAGVDVPIINKKRMCRNGCCTTCAVKVLEGKVKQEGALGLLKDLKQEGYALTCCSYPKSDLVVRLQEEDDVYMKQFGNDFEGGGVEWGGVFLDED 233          
BLAST of NO24G00440 vs. NCBI_GenBank
Match: CEL97897.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 189.1 bits (479), Expect = 1.500e-44
Identity = 85/138 (61.59%), Postives = 113/138 (81.88%), Query Frame = 0
Query:   82 SPNRWKRNGEPLEPGYGGIWPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFE 220
            +P +W+  G+ ++P  GG WPG+P+AKTYKVT++DP S   +T DVPEDRYIFF+FE++    P+ N K+MCRNGCCTTCAV++ EG+VKM+  +GL REM++AGYALTC S P+SD+V ELQDEDEVYKKQ+G+TF+
Sbjct:  133 TPMKWEM-GDRIKPYKGGPWPGDPNAKTYKVTIIDPVSGERHTQDVPEDRYIFFSFEESRNLPPIKNIKKMCRNGCCTTCAVRVREGEVKMDPQIGLTREMERAGYALTCVSYPRSDVVLELQDEDEVYKKQFGDTFD 269          
BLAST of NO24G00440 vs. NCBI_GenBank
Match: XP_005718525.1 (unnamed protein product [Chondrus crispus] >CDF38620.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 164.5 bits (415), Expect = 4.000e-37
Identity = 78/135 (57.78%), Postives = 92/135 (68.15%), Query Frame = 0
Query:   99 GIWPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGGFLPEDD 234
            G  PGNP+AKT+ VTV DP++       VPEDRY++    D   D+P       C NGCCTTCAVK+T G+V    ALGLL+EM+   YAL C S PKSDI C LQDEDEVY KQ+G +FE GGVEWGG +PEDD
Sbjct:  113 GSLPGNPNAKTHTVTVHDPKNDRVLKYQVPEDRYVWHGMSDQDADIP-----SSCLNGCCTTCAVKITSGEVDQSEALGLLKEMRDQDYALLCVSYPKSDIECVLQDEDEVYVKQFGSSFESGGVEWGGVVPEDD 242          
BLAST of NO24G00440 vs. NCBI_GenBank
Match: OSX70086.1 (hypothetical protein BU14_0924s0003 [Porphyra umbilicalis])

HSP 1 Score: 154.5 bits (389), Expect = 4.200e-34
Identity = 77/137 (56.20%), Postives = 95/137 (69.34%), Query Frame = 0
Query:   92 PLEPGYGGIWPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDA-GVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGG 228
            P+     G  PG+PDA T+ VTV+D       T+ VPEDRYI+ A E+A G  LP       CR+GCCTTCAV++T G+V    ALGLLR+M++ GYAL C S P+SDI C LQ+EDEVY KQ+G+TFE GGVEWGG
Sbjct:   47 PVVAALDGSLPGSPDAPTHTVTVLDGAGAVVQTLAVPEDRYIWHAMEEASGGRLP-----SSCRHGCCTTCAVRVTSGEVDQREALGLLRQMREVGYALLCVSKPRSDITCVLQEEDEVYVKQFGDTFEQGGVEWGG 178          
BLAST of NO24G00440 vs. NCBI_GenBank
Match: XP_005704666.1 (ferredoxin [Galdieria sulphuraria] >EME28146.1 ferredoxin [Galdieria sulphuraria])

HSP 1 Score: 150.6 bits (379), Expect = 6.000e-33
Identity = 78/175 (44.57%), Postives = 108/175 (61.71%), Query Frame = 0
Query:   59 IYSPTSLYALEPKRLTITEQLKFSPNRWKRNGEPLEPGYGGIWPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGGFLPEDD 234
            +Y  +  Y    +RLT   Q   S   W  +GE           G+P+A+ Y+VTV + R+   Y  DVP DRYI+++F + G++LP       C NGCCTTCA ++  G+++   ALGLL+EMK   YAL C S PKSD+   LQ+EDEVY +Q+G++FE GGVE+GG +PEDD
Sbjct:   28 LYGSSRYYTRILRRLTRNCQQYLS---WTCHGETF---------GDPNARKYRVTVRNQRTGECYIRDVPTDRYIWWSFLEQGIELP-----SSCVNGCCTTCACRVVSGRIEQPLALGLLKEMKNKRYALLCVSYPKSDVEVVLQEEDEVYCRQFGDSFESGGVEYGGIIPEDD 185          
BLAST of NO24G00440 vs. NCBI_GenBank
Match: XP_005536691.1 (similar to ferredoxin [Cyanidioschyzon merolae strain 10D] >XP_005538534.1 probable ferredoxin [Cyanidioschyzon merolae strain 10D] >BAM80655.1 similar to ferredoxin [Cyanidioschyzon merolae strain 10D] >BAM82498.1 probable ferredoxin [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 144.4 bits (363), Expect = 4.300e-31
Identity = 66/136 (48.53%), Postives = 87/136 (63.97%), Query Frame = 0
Query:   98 GGIWPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGGFLPEDD 234
            GG  PG+P A  + VT+++ R   + T+ VPEDRYI++ F + G +LP       C NGCCTTCA K+  G ++   ALGL RE +  GY L C S P+S +V  LQ EDEVY++QW  TFE GG  WGG +PE+D
Sbjct:   61 GGALPGDPAAPKHNVTILNYRDDESLTLAVPEDRYIWWYFRENGYELP-----SSCLNGCCTTCAAKIVRGSLEQPEALGLTREFRDKGYCLLCVSYPRSALVLVLQSEDEVYEQQWATTFESGGKRWGGLIPEED 191          
BLAST of NO24G00440 vs. NCBI_GenBank
Match: WP_096581063.1 (MULTISPECIES: ferredoxin [Nostocales] >BAY33718.1 2Fe-2S ferredoxin [Nostoc carneum NIES-2107] >BAZ01474.1 2Fe-2S ferredoxin [Tolypothrix tenuis PCC 7101] >BAZ74603.1 2Fe-2S ferredoxin [Aulosira laxa NIES-50])

HSP 1 Score: 119.8 bits (299), Expect = 1.100e-23
Identity = 60/126 (47.62%), Postives = 78/126 (61.90%), Query Frame = 0
Query:  107 AKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGGFLPED 233
            ++TYK+ V D  +   YT+ VPEDRYI  + E  G +LP       CRNG CTTCAV++  G++    A+GL  E+++ GYAL C S P+SDI  E QDEDEVY+ Q+G  F  G V  G  L ED
Sbjct:    2 SQTYKIRVRDRNTGKEYTLQVPEDRYILHSAEQQGTELPF-----SCRNGACTTCAVRVLSGEIYQPEAIGLSPELRRKGYALLCVSYPRSDIEVETQDEDEVYELQFGRFFARGKVRAGLPLDED 122          
BLAST of NO24G00440 vs. NCBI_GenBank
Match: WP_045867930.1 (MULTISPECIES: ferredoxin [Nostocales] >EKF04715.1 ferredoxin [Tolypothrix sp. PCC 7601] >BAY92080.1 2Fe-2S ferredoxin [Fremyella diplosiphon NIES-3275])

HSP 1 Score: 119.4 bits (298), Expect = 1.500e-23
Identity = 60/126 (47.62%), Postives = 78/126 (61.90%), Query Frame = 0
Query:  107 AKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGGFLPED 233
            ++TYK+ V D  +   YT+ VPEDRYI  + E  G +LP       CRNG CTTCAV++  G++    A+GL  E+++ GYAL C S P+SDI  E QDEDEVY+ Q+G  F  G V  G  L ED
Sbjct:    2 SQTYKIRVRDRNTGKEYTIQVPEDRYILHSAEQQGTELPF-----SCRNGACTTCAVRVLSGEIYQPEAIGLSPELRRKGYALLCVSYPRSDIEVETQDEDEVYELQFGRFFARGKVRAGLPLDED 122          
BLAST of NO24G00440 vs. NCBI_GenBank
Match: WP_086685418.1 (ferredoxin [Nostoc sp. T09] >OUL36426.1 ferredoxin [Nostoc sp. T09])

HSP 1 Score: 119.0 bits (297), Expect = 2.000e-23
Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = 0
Query:  107 AKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGKRMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIVCELQDEDEVYKKQWGETFEGGGVEWGGFLPED 233
            ++TY + V D  S   YT++VPEDRYI  + E  G +LP       CRNG CTTCAV++  G++    A+GL  E+++ GYAL C S P+SD+  E QDEDEVY+ Q+G  F  G V+ G  L ED
Sbjct:    2 SRTYTIRVHDRNSGKEYTLEVPEDRYILHSAEQQGTELPF-----SCRNGACTTCAVRVLSGEIYQPEAIGLSPELRRKGYALLCVSYPRSDLEVETQDEDEVYELQFGRYFARGKVKAGLPLDED 122          
The following BLAST results are available for this feature:
BLAST of NO24G00440 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24316.12.200e-7571.35ferredoxin (2fe-2s) [Nannochloropsis gaditana][more]
CBJ27792.11.400e-5364.52ferredoxin [Ectocarpus siliculosus][more]
CEL97897.11.500e-4461.59unnamed protein product [Vitrella brassicaformis C... [more]
XP_005718525.14.000e-3757.78unnamed protein product [Chondrus crispus] >CDF386... [more]
OSX70086.14.200e-3456.20hypothetical protein BU14_0924s0003 [Porphyra umbi... [more]
XP_005704666.16.000e-3344.57ferredoxin [Galdieria sulphuraria] >EME28146.1 fer... [more]
XP_005536691.14.300e-3148.53similar to ferredoxin [Cyanidioschyzon merolae str... [more]
WP_096581063.11.100e-2347.62MULTISPECIES: ferredoxin [Nostocales] >BAY33718.1 ... [more]
WP_045867930.11.500e-2347.62MULTISPECIES: ferredoxin [Nostocales] >EKF04715.1 ... [more]
WP_086685418.12.000e-2346.83ferredoxin [Nostoc sp. T09] >OUL36426.1 ferredoxin... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL039nonsL039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR026ngnoR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00440.1NO24G00440.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|129353gene_7274Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100047g16gene6158Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00440.1NO24G00440.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00440 ID=NO24G00440|Name=NO24G00440|organism=Nannochloropsis oceanica|type=gene|length=2399bp
GGAAAATTCAAGCAAACAACAGGCATAAAGTAAATATGCCAAGTCTTTTG
GATCCTGATACCATTGTATTTTTTGGGGCTGCTTAGAATGAATGGCAGAG
CCAACGAAAGGCTGTTCATGTAAAAATGCAGCTCCCGTCAACCTCCCCAC
CCACAGGCAAATGTCAACATTTTGATGTCCAACTCTTTTCTTTTAGACTT
TACCAAATATAATCTGTGATACTCTCTACTGTTTTATCATGATTGAAAGA
GAAAGAAGCCACGCTTGCTCTGCTCTGCCCGATCGTACGGCGGGGCCAGG
AACCGCGTCTCGAGTTCGGCCGAGGCTGGTGCCCATGTATTGAAAATGTA
TGTCAGGTGACCTGGTCTGGCTCTTTCCAAGCGAGAAAATAGCCAGGGCG
TAAGTTTGTCTAGTACTGCGGGAAGTAGATAGAAATAAAAGACGGTGCTT
GCTTTTACGGCGGCCGCCACCAGGGCGTGACTATCTCTCCCACTGCCCTC
TTCCTTCCTCTCCGCAAACCCCCCCTTTCTTCCGCATTCAAATCACTCAA
AACATCAAACAAATCCCCCTCAAATATCTGAACTAAATTGCTCTTTTTTT
GCTCCTTGGCCTTCTCCCGCGCAAGCTCTGCGAGCACTGCATCAATCTCG
AGTCCGTAGCACTGACAGCCAAATCGAGCGGCCTCAAGCAAAAAAGCTCC
ATCCCCACAACCCACGTCCATCACCACCGCGGACCCGGTCAACAAACTTC
CGATGACTGCAAAAATGTTGTCCATCTTGTCTCGTTTGCTGCTGACAAAG
GGACTGACCACGCCTCGCGCCCAGGCAAACCCGAATGTGCCGATCTGAGG
CTTCACCAGTAAGAAGTCTTGTGGGTACAGTCGCATTTTCTTGGCCAGCT
CTGGGTCGTCATCCTCCCCACCAGTACTTTGAAGGGGTGTTGATATACCA
GAATCATGCATTTGATGGTGCCGGTGGGTCATTCTCTCGTCTCATTTGCC
TTGGTCTTGCAATTACTTCTCCACCCCCGGTTCGTGAAGTGGTGCTGCGG
GCGCAAAAGACCAGATGAAGTAGTGTCTGCGGGGTCGAAAAAGAGTGAGA
AAATACATCAGGAAGCTTAATCAAGATGATAAGAAGAAGAAGACTGGCGC
TCTGTGTGACTGCGGGTGTGCACCCTAGGTGCCAGCGAACAACAAGGTTG
AAGTGTCTCTCGTCTTCCTGCTGGTCCACCTAAATCGAGTTTGGTGGTGC
GTCCCACTCTTTGTTTACGGATCCCATCCACCACTGCTCTCTAACAAGCC
ACGACTAACTTATAACCATCCTGTGCATACACAGGTCTTCATCACTTTAC
TCCGTCCGCCCACTAACGTCGTGAAAGCAGCCCCGCCTGACGCACGTATG
GCCTCCAGACAGATCTCCGTGCTGCAACTAGCAGTGCTGCAAGCCGGTGT
CCTTCTAGCCATGCTACTCATCCAGACTCCCAATCCCAGCCAGGCCTTCC
TCCTGCCCAAGATAATACGACAAGGTCGTGTTGGTGATCAGCAACCGCAA
CTGCGACTGCGGCATGCCCAGATCTACTCCCCCACATCCCTCTACGCCTT
GGAACCCAAACGCCTCACTATCACCGAACAGCTCAAGTTCTCCCCAAACC
GATGGAAGCGGAATGGCGAGCCACTTGAACCTGGTTACGGAGGGATCTGG
CCGGGCAACCCTGATGCCAAGACGTATAAGgtaaactcgggtgctttcgt
tgagagcggatcgtgttgattcatgccgctctcttttcccttacctcacc
cttccctccccctctcccgtctttccctcccagGTGACCGTCATGGACCC
CCGATCCAAGACTAATTATACGATGGACGTTCCTGAGGATCGGTACATTT
TCTTTGCCTTTGAAGATGCTGGGGTGGACTTGCCGTTAATGAACGGGAAA
AGGATGTGCCGCAATGGGTGCTGTACGACATGTGCGGTTAAAATGACGGA
GGGAAAAGTAAAGATGGAAGCTGCTTTAGGGCTGTTGCGAGAGATGAAAC
AGGCGGGATATGCATTGACGTGCTGTTCATTGCCCAAGTCGGACATAGTG
TGTGAGTTGCAGGATGAGGATGAGGTATACAAAAAACAGTGGGGAGAGAC
GTTCGAGGGTGGGGGGGTGGAATGGGGCGGATTTCTGCCGGAGGATGATT
AAGAAAAAGGGGAGGAGGAAAATAATCTCTAGAAAATGGAGAAAGGGGAG
AAAGAAAAATGAGGAGAACTAGGTTGGAGAGAGAGAAGAGAGATTAAATG
AGAGGAGAGCTCCGATCCGCTTTTGATTTTGAGTTGGGGCTACTTGCCAC
ATGATGATACGGTAGAAAGGAAAGCAACAAAACTTTGTATTTTGCCCTG
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protein sequence of NO24G00440.1

>NO24G00440.1-protein ID=NO24G00440.1-protein|Name=NO24G00440.1|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MASRQISVLQLAVLQAGVLLAMLLIQTPNPSQAFLLPKIIRQGRVGDQQP
QLRLRHAQIYSPTSLYALEPKRLTITEQLKFSPNRWKRNGEPLEPGYGGI
WPGNPDAKTYKVTVMDPRSKTNYTMDVPEDRYIFFAFEDAGVDLPLMNGK
RMCRNGCCTTCAVKMTEGKVKMEAALGLLREMKQAGYALTCCSLPKSDIV
CELQDEDEVYKKQWGETFEGGGVEWGGFLPEDD*
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Synonyms
Publications