NO24G00430, NO24G00430 (gene) Nannochloropsis oceanica

Overview
NameNO24G00430
Unique NameNO24G00430
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1340
Alignment locationchr24:147386..148725 -

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Properties
Property NameValue
DescriptionRibosomal protein s25
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:147386..148725 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004977Ribosomal_S25
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Homology
[Close]
BLAST of NO24G00430 vs. NCBI_GenBank
Match: EWM24294.1 (ribosomal protein s25 [Nannochloropsis gaditana])

HSP 1 Score: 200.7 bits (509), Expect = 2.400e-48
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 0 
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYNNRLLTEIPKSKLITPSSLVERLKINGSLARAALRELKEKGLIKPISVHHSQIIYTRAIAAAE 112
            MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMY NRLLTEIPKSKLITPS+LVERLKINGSLARAALRELKEKGLIKP+SVHHSQIIYTRA AAAE
Sbjct:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE 111
[Close]
BLAST of NO24G00430 vs. NCBI_GenBank
Match: XP_009037394.1 (hypothetical protein AURANDRAFT_59049 [Aureococcus anophagefferens] >EGB08032.1 hypothetical protein AURANDRAFT_59049 [Aureococcus anophagefferens])

HSP 1 Score: 156.0 bits (393), Expect = 6.900e-35
Identity = 82/109 (75.23%), Postives = 98/109 (89.91%), Query Frame = 0 
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYNNRLLTEIPKSKLITPSSLVERLKINGSLARAALRELKEKGLIKPISVHHSQIIYTRAIAA 110
            MPPKVQQK+KE K+AAAMAGGKSKKKKWSKGK+REK+ANKVLFDE+ Y  RLL EIPK KLITPS+LVERLK+NG+LARAA++EL+EKGLIK +S HH+Q I+TR + +
Sbjct:    1 MPPKVQQKSKEAKMAAAMAGGKSKKKKWSKGKVREKMANKVLFDEDTY-ARLLAEIPKMKLITPSALVERLKVNGALARAAIKELQEKGLIKQVSYHHTQWIFTRDVGS 108
[Close]
BLAST of NO24G00430 vs. NCBI_GenBank
Match: CBN75356.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 151.8 bits (382), Expect = 1.300e-33
Identity = 79/111 (71.17%), Postives = 94/111 (84.68%), Query Frame = 0 
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYNNRLLTEIPKSKLITPSSLVERLKINGSLARAALRELKEKGLIKPISVHHSQIIYTRAIAAAE 112
            MPPK QQK+KEQK+AAAMAGGK +KKKWSKGK+REKVAN+VLF+E+ Y  R L E+PK KLIT S LVERLK+NGSLARAA+REL+EKGLI+ +  HH+Q+IYTRA    E
Sbjct:    1 MPPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTY-TRCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKVDAHHAQVIYTRATNVEE 110
[Close]
BLAST of NO24G00430 vs. NCBI_GenBank
Match: XP_002293809.1 (RS25, ribosomal protein 25 40S small ribosomal subunit [Thalassiosira pseudonana CCMP1335] >EED88818.1 RS25, ribosomal protein 25 40S small ribosomal subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 134.8 bits (338), Expect = 1.600e-28
Identity = 73/107 (68.22%), Postives = 91/107 (85.05%), Query Frame = 0 
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYNNRLLTEIPKSKLITPSSLVERLKINGSLARAALRELKEKGLIKPISVHHSQIIYTRAI 108
            MPPKVQQK+KEQK+AAAMAGGK KKKKWSKGK R+KV NKVLF +E + +RL +E+PK KLIT SS+VE+LKI+G LAR AL +L E+G+I+P+SV  +Q IYTR+I
Sbjct:    1 MPPKVQQKSKEQKMAAAMAGGKGKKKKWSKGKQRDKVDNKVLFTKEQH-DRLNSEVPKMKLITVSSVVEKLKISGGLARRALNQLAEEGVIRPVSVSRAQRIYTRSI 106
[Close]
BLAST of NO24G00430 vs. NCBI_GenBank
Match: XP_008611930.1 (S25 ribosomal protein [Saprolegnia diclina VS20] >EQC34524.1 S25 ribosomal protein [Saprolegnia diclina VS20])

HSP 1 Score: 131.7 bits (330), Expect = 1.400e-27
Identity = 73/110 (66.36%), Postives = 89/110 (80.91%), Query Frame = 0 
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSK-KKKWSKGKMREKVANKVLFDEEMYNNRLLTEIPKSKLITPSSLVERLKINGSLARAALRELKEKGLIKPISVHHSQIIYTRAIAA 110
            MPPK QQKTKEQK+AAA+AG + K KKKWSKGK REK  NKVL+D+E Y  R+  EIPK KLIT S++VERLK+N +LARA +REL+ KG IK +S H +Q+IYTRAI+A
Sbjct:    1 MPPKTQQKTKEQKMAAALAGSRGKGKKKWSKGKAREKTQNKVLYDQEAY-ERMCKEIPKMKLITASAIVERLKVNAALARATIRELELKGDIKVVSKHSAQLIYTRAISA 109
[Close]
BLAST of NO24G00430 vs. NCBI_GenBank
Match: XP_012195049.1 (S25 ribosomal protein [Saprolegnia parasitica CBS 223.65] >KDO34270.1 S25 ribosomal protein [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 131.3 bits (329), Expect = 1.800e-27
Identity = 72/110 (65.45%), Postives = 89/110 (80.91%), Query Frame = 0 
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSK-KKKWSKGKMREKVANKVLFDEEMYNNRLLTEIPKSKLITPSSLVERLKINGSLARAALRELKEKGLIKPISVHHSQIIYTRAIAA 110
            MPPK QQKTKEQK+AAA+AG + K KKKWSKGK REK  NKVL+D+E Y  R+  E+PK KLIT S++VERLK+N +LARA +REL+ KG IK +S H +Q+IYTRAI+A
Sbjct:    1 MPPKTQQKTKEQKMAAALAGSRGKGKKKWSKGKAREKTQNKVLYDQEAY-ERMCKEVPKMKLITASAIVERLKVNAALARATIRELELKGDIKVVSKHSAQLIYTRAISA 109
[Close]
BLAST of NO24G00430 vs. NCBI_GenBank
Match: XP_008912573.1 (hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETI36701.1 hypothetical protein, variant [Phytophthora parasitica P1569] >ETK76920.1 hypothetical protein, variant [Phytophthora parasitica] >ETL30346.1 hypothetical protein, variant [Phytophthora parasitica] >ETL83589.1 hypothetical protein, variant [Phytophthora parasitica] >ETM36787.1 hypothetical protein, variant [Phytophthora parasitica] >ETN02190.1 hypothetical protein, variant [Phytophthora parasitica INRA-310] >ETO65428.1 hypothetical protein, variant [Phytophthora parasitica P1976] >ETP06531.1 hypothetical protein, variant [Phytophthora parasitica CJ01A1] >ETP34608.1 hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 126.7 bits (317), Expect = 4.500e-26
Identity = 67/99 (67.68%), Postives = 82/99 (82.83%), Query Frame = 0 
Query:   14 LAAAMAGGKSK-KKKWSKGKMREKVANKVLFDEEMYNNRLLTEIPKSKLITPSSLVERLKINGSLARAALRELKEKGLIKPISVHHSQIIYTRAIAAAE 112
            +AAAMAGGK K KKKWSKGK+REKVANKVL+D+E Y  RLL E+PK KLIT S++VERLK+N +LARA++ EL+E G I  +  HHSQ+IYTRA+AA E
Sbjct:    1 MAAAMAGGKGKGKKKWSKGKVREKVANKVLYDQETY-ERLLVEVPKMKLITASAIVERLKVNAALARASIHELEENGTISKVLAHHSQLIYTRAVAAEE 98
[Close]
BLAST of NO24G00430 vs. NCBI_GenBank
Match: ADV03034.1 (ribosomal protein S25 [Karlodinium veneficum])

HSP 1 Score: 124.4 bits (311), Expect = 2.200e-25
Identity = 69/109 (63.30%), Postives = 89/109 (81.65%), Query Frame = 0 
Query:    4 KVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYNNRLLTEIPKSKLITPSSLVERLKINGSLARAALRELKEKGLIKPIS-VHHSQIIYTRAIAAAE 112
            KV QK+KE K+ AAMAGG+SKKKKWSKGK++EK+AN V+FD+  Y ++LL EIPK+KLITPS + ERLK+NGS+AR A+R L+EK LI  +S  HH+Q+IYTR IA  +
Sbjct:    5 KVVQKSKEAKMKAAMAGGRSKKKKWSKGKVKEKLANLVMFDKATY-DKLLKEIPKAKLITPSVVSERLKVNGSVARQAIRHLEEKDLIAHVSEKHHAQMIYTRKIAGGD 112
[Close]
BLAST of NO24G00430 vs. NCBI_GenBank
Match: OEU17339.1 (ribosomal protein S25 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 124.0 bits (310), Expect = 2.900e-25
Identity = 68/107 (63.55%), Postives = 84/107 (78.50%), Query Frame = 0 
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYNNRLLTEIPKSKLITPSSLVERLKINGSLARAALRELKEKGLIKPISVHHSQIIYTRAI 108
            MPPKVQQK+KE K+AAAMAGGK KKKKWSKGK R++V NKV F +E +  R   E+PK KLIT S++VE+LKING LAR ALR+L+  G I+P+ +  SQ IYTR+I
Sbjct:    1 MPPKVQQKSKEAKMAAAMAGGKGKKKKWSKGKSRDQVDNKVRFSKEQF-ERFHDEVPKMKLITVSAVVEKLKINGGLARRALRDLEADGKIRPVLISRSQRIYTRSI 106
[Close]
BLAST of NO24G00430 vs. NCBI_GenBank
Match: ADV03065.1 (ribosomal protein S25 [Amphidinium carterae])

HSP 1 Score: 122.9 bits (307), Expect = 6.500e-25
Identity = 68/107 (63.55%), Postives = 88/107 (82.24%), Query Frame = 0 
Query:    4 KVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYNNRLLTEIPKSKLITPSSLVERLKINGSLARAALRELKEKGLIKPI-SVHHSQIIYTRAIAA 110
            KV QK+KE KL AAMAGG+SKKKKWSKGK++EK+AN V+FD+  Y  +++ EIPK+KLITPS + ERLK+NGS+ARAA+R L+EKGLI+ +   H +Q+IYTR I A
Sbjct:    5 KVVQKSKEAKLKAAMAGGRSKKKKWSKGKVKEKLANMVMFDKPTY-EKMMKEIPKAKLITPSVVSERLKVNGSVARAAIRHLEEKGLIQHVGDKHAAQMIYTRKIGA 110
The following BLAST results are available for this feature:
BLAST of NO24G00430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24294.12.400e-4896.40ribosomal protein s25 [Nannochloropsis gaditana][more]
XP_009037394.16.900e-3575.23hypothetical protein AURANDRAFT_59049 [Aureococcus... [more]
CBN75356.11.300e-3371.17conserved unknown protein [Ectocarpus siliculosus][more]
XP_002293809.11.600e-2868.22RS25, ribosomal protein 25 40S small ribosomal sub... [more]
XP_008611930.11.400e-2766.36S25 ribosomal protein [Saprolegnia diclina VS20] >... [more]
XP_012195049.11.800e-2765.45S25 ribosomal protein [Saprolegnia parasitica CBS ... [more]
XP_008912573.14.500e-2667.68hypothetical protein, variant [Phytophthora parasi... [more]
ADV03034.12.200e-2563.30ribosomal protein S25 [Karlodinium veneficum][more]
OEU17339.12.900e-2563.55ribosomal protein S25 [Fragilariopsis cylindrus CC... [more]
ADV03065.16.500e-2563.55ribosomal protein S25 [Amphidinium carterae][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL039nonsL039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR026ngnoR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002882NSK002882Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00430.1NO24G00430.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|598070gene_7272Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100047g14gene6156Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00430.1NO24G00430.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00430 ID=NO24G00430|Name=NO24G00430|organism=Nannochloropsis oceanica|type=gene|length=1340bp
AGGCCTCGCATCGCCTGCCGCATTTGATGATGCCCTGCTTTCCCTAGTCT
TTAGACCATCTAACAACACCGTTGCCATTCCCACGTCCGTGCCATCATGC
CTGTGTATGTATGCCTGAAGGTCTACAGTTTGATTTGGGGGTTGCGCGGT
TGGTTGGGTGGTGGGAGACCGGGGCAAGGGGAAGAGAAGGAAAGGAGCGA
AGGTATACGCAAGGCAAGCACAACGCACACAAGCACGTCCACTCACACCC
ACCATTATCACACTTGTATACACAGGGAGTCACCATCCTTGTTGTCCGTA
GGAGAGGAAGCAGCTAAGTAGGGCCTCTATCTTGCCGCACCAGTGCAAAG
ATGgtaagtcacgggtgggatgaagagagcgagggagggaggggagggaa
aagagcaaagagcatgccagcaacggaggactattagctgccatgagtgc
tttgtagtgccctgtatacatgtgtatcagatagtggagcatgctcgcct
gtctagccacacaacaagacgtaatgctcatcccatcatctctttccccc
ctcccttccctccgtctcaccacagCCCCCCAAGGTCCAACAAAAGACAA
AGGAGCAAAAGCTCGCCGCCGCCATGGCGGGCGGAAAGAGCAAGAAGAAG
gttcgtgtacaccttgaagcgggactggagtattgggagtggggaagtgt
ccttctattcaaaggggacacgtactcaattcttttttcctccctttcct
ccccttccccctctcgagcagAAGTGGTCCAAGGGCAAGATGCGTGAGAA
GGTCGCCAACAAGGTGCTTTTCGACGAGGAGATGTACAACAACCGTCTGT
TGACGGAGATCCCCAAGTCCAAGCTCATCACTCCTTCCTCTCTGGTCGAG
CGCCTCAAGATTAATGGTTCTCTGGCCCGTGCCGCTCTGCGTGAGCTCAA
GGAGAAGGGTCTGATTAAACCCATCTCGGTGCACCACTCCCAGATCATCT
ACACACGCGCCATCGCCGCCGCCGAGTAACTTTAAGAGACGAAGACGACG
ATGAGAGCTTTGTGTAGATTACATAGGAAAAGAACCGACAAGGGGCGAAA
AAGACGAGCTGGATAGGAACAAATGGAGGGTACGGCAGATTGTGGGGAGC
CACCCTTTCTTTTCGGAACTTTTTCTTTGGCATTGGGAATACGGCCAAGA
GACACGTCATCCAAAGGATGGAGGTGAGGTGGTAATGTGTGTGCCTGAGG
GGGAAGTAGGTTAGGTTTTCCTCGCTCCTCTAGGCTTAAGGTGCGGGCAC
CAGACTCAAGAAAGAACCAAGAAGAAAGGCAACGAAAGGA
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protein sequence of NO24G00430.1

>NO24G00430.1-protein ID=NO24G00430.1-protein|Name=NO24G00430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYNN
RLLTEIPKSKLITPSSLVERLKINGSLARAALRELKEKGLIKPISVHHSQ
IIYTRAIAAAE*
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Synonyms
Publications