NO24G00420, NO24G00420 (gene) Nannochloropsis oceanica

Overview
NameNO24G00420
Unique NameNO24G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3124
Alignment locationchr24:144002..147125 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:144002..147125 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036443Znf_RanBP2_sf
IPR036047F-box-like_dom_sf
IPR001876Znf_RanBP2
Homology
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BLAST of NO24G00420 vs. NCBI_GenBank
Match: EWM24328.1 (hypothetical protein Naga_100047g13 [Nannochloropsis gaditana])

HSP 1 Score: 594.0 bits (1530), Expect = 8.800e-166
Identity = 433/1016 (42.62%), Postives = 505/1016 (49.70%), Query Frame = 0 
Query:    3 SSGIYFDLPGFELLRPVASTSSXXXXXXXXXXNEPPMLPSSFSTXXXXXXXXISSVEQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRGGVLSLSSLRQELESPWNCVKCTYLNAPQNRSCEACGGLNQWRVRLHEKNAAATRAHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK----WNKVXXXXXXXXXXXXXXXXXXXXXXXXPLAVLLRANPVLIHGGGPFRLLPSDLHLHCLGFLHDHFEYVRLRTVSKAWAGMAEHESLWRPLVERDCGELMTRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGIWSCKACGLLQADRFGLHCEFCSAEREILLP---SPSERGRGGEGXXXXXXXXXASSCFRVIKDYSELAEVWRNSNIK-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERKRRADAIALEASTKIATGEGESHSRWFMAGTSKSNAWEVANKQTGDFYYVYKVQALDRMLGAKWDSLHRGWEWMSNSCRVALRTRLYATREEICQRDDSLIPITSSFQRCVNKLTQRDWPLLWTCMRAELFLQAEGLRRDVVRHMRGREARLEEKGVVGGYRYLLQDLLWCFSVYSAWVFEVSSFFMKMNDQISGERFRTTTICGEGEREGGGENTLYLSEVALVAFRENVLMHFMIRTPVMRAVEGEREGEGMRLAEFFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGMSGAPRASAQQQELVESEEGEVDDQVLATRVRSHYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXITANLAEELIMLGNMVEELDVLEQGGGKQSEAFRQRLLKPLRATLAELRVDGLGGEGGGTGGEEL-GLREEEDMEGPEVMMTLNENGDQLSRARDGFRRLRRGQGLCDDRGGRGRKRMRLV 1000
            +SGIYFDLPGF+LLRPV   SS                 S+FS         +SSVE++                                      G   G   LSS++QELES WNCVKCT+LNAP +RSCEACGG++QWR+RL EK AAA  AHR                  XXXXXXXXXXXXXXXXXX     +                                  A LLRA PVLIHGGGPF+LLPSDL LHCL FLH+   Y  LR V+K W  +AEHESLWR L E+D  E   RA                                                         XXXXX        CGL QAD FGL+CEFCS EREI+LP    P+ R  GG            +SCFRV+KDY ELAE+WR+SN K                                                                              ER+R       EA      G  E  +R FMAGT + +AWEVA  +TGDFY++YK++ALDR+   +WDSLHRGWEW+SNSCRVALR RLYATRE+I QRDDSLIPITSSFQ+CVNKLT+RDWPLLW CMRAE  LQAE LRRD++RHMRG  +RLEEKG+V  YR+ LQDLL CF VY+AWVFEVSSFFMKMNDQISGE FR TT    G       NT YL EVALVAFR++V+ HF I TPV++ VEG+    G+RLA FF+                                       +G S       +  E+VE EE EVD++VLATR  S  A                            IT  LAE+LI LG M EELDV+EQG   Q EAFR+ LLKPLRATLAELRVDG+G   GG  G+E+ G   EE +E    MM +NE GD++  +R   RRL  G+    D  G   KR RLV
Sbjct:    2 ASGIYFDLPGFDLLRPVIPASSARKHEVVGKWKPD---ASNFS----MNLPTVSSVERS-VLEDRRRKQRRLEKDREFACTPSMKLDDKEDDEGGLTGCSAG--ELSSMQQELESSWNCVKCTFLNAPDDRSCEACGGISQWRIRLREKKAAAMTAHRRCEERAQEQHQERCRDLMXXXXXXXXXXXXXXXXXXVICVEQEVRPCTSTGFVSSYAHPSTAVPATEALSTSANATAKLLRATPVLIHGGGPFQLLPSDLLLHCLSFLHEASVYAGLRAVAKHWNEVAEHESLWRVLAEKDWQEPKRRA------CLLGGGPSRAGPRSTTPVATGAAGGKEPRTPGWPPSADGRDYARTPSASSPXXXXXXXXXXXXXCGLRQADPFGLNCEFCSTEREIILPPSGPPAGRPTGG--------GEEEASCFRVVKDYQELAEIWRDSNAKAAAAASGQGRDHRRGRLSQTGEGMSGREEKAEESGAQGAELAPFQSGLLKPVSLLAASSPPTALPSSLATLTRAPASGEREREQVGPVPEAGGDPEAGVDE-QARSFMAGTGRESAWEVAETRTGDFYWLYKMRALDRIWAGRWDSLHRGWEWLSNSCRVALRARLYATREQIHQRDDSLIPITSSFQKCVNKLTRRDWPLLWECMRAEFALQAEALRRDIIRHMRG--SRLEEKGLVAAYRFFLQDLLKCFGVYTAWVFEVSSFFMKMNDQISGESFRATTASFGGCGALDAANTPYLPEVALVAFRDHVVQHFSILTPVLQVVEGD---GGLRLAAFFQKGGDEDRGAGREAPRLGEEGGCF----------------KGSSVPMPQQMRLLEVVEPEESEVDEKVLATRGMSFRA----------------LQAAARHGSHRRITMYLAEDLIKLGRMAEELDVMEQGSASQCEAFRRLLLKPLRATLAELRVDGVGRCEGGVRGDEIGGCDREEALE----MMAMNEGGDRVGDSRGISRRLSLGRRAGHDEDGI-VKRRRLV 950
The following BLAST results are available for this feature:
BLAST of NO24G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24328.18.800e-16642.62hypothetical protein Naga_100047g13 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL039nonsL039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR026ngnoR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002881NSK002881Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00420.1NO24G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|567758gene_7270Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100047g13gene6155Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00420.1NO24G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00420 ID=NO24G00420|Name=NO24G00420|organism=Nannochloropsis oceanica|type=gene|length=3124bp
ACAGTGCCACAGGTCTTCTCGGCCATGCACCACCAGCCTTGAGCCGCGTC
CTTCCGTGCCAGCACCATCATCAGCAACAACATTAACGCAATGGCCTCCT
CCGGCATCTACTTCGATCTCCCAGGCTTTGAGCTCCTGCGGCCTGTCGCT
TCAACTTCTTCCTCCTCCTCTCACTTTTCTGCCAGTGCCAGTAATGAGCC
TCCTATGCTCCCCTCGTCGTTCTCCACATCCACTTCCATGTCATTACCAA
CGATTAGCAGCGTGGAGCAGGCCGTCTCCCAGGACCGGCGGCAAAAGCAA
CGCCGCTTGGAAAAGGATCGAAGATTTGCCTTTTCGACAAGCACGAAGAT
GACGAGCAGGGACGAGGAGGAGGAGGAGGAGGATGCTGGGGTTAGAGGTG
GAGTGCTGTCACTATCGTCGCTGCGGCAAGAATTGGAGTCGCCCTGGAAT
TGTGTCAAGTGCACATACCTGAACGCGCCGCAGAACCGAAGCTGCGAGGC
TTGTGGTGGGTTGAATCAATGGCGGGTCCGCTTGCATGAGAAGAACGCGG
CGGCGACGAGGGCGCATCGACAGCAAGAGCGACAGGCACAGGAGCAGCAT
CAAGAGAGATTCAAGGATTTGATGGAATTGGAAGAGGAAGAGGAAGAGAA
CGACGACGACGACGACGATGTAGTGGTGATAGGGGATGAGGGAAAATGGA
ATAAAGTGTCACCTTCCTCTACATCCCCTTCCTTGATCTCAGCAGCAGCA
GCAGCAACAGCAGCTGCAACAGCAGGAGCGCCGCTAGCAGTTTTACTTCG
AGCAAACCCCGTGCTAATTCACGGCGGTGGACCCTTCCGTTTACTGCCCT
CCGACTTGCATTTGCATTGCCTAGGCTTTTTACACGACCATTTCGAATAC
GTTCGATTGAGAACAGTGAGTAAGGCATGGGCGGGCATGGCCGAGCATGA
GAGTCTCTGGCGACCCCTAGTCGAGAGGGATTGTGGAGAATTGATGACAA
GAGCAGCAGCAGCAGCAGCAGCAGCATCAGCAGCATCAGCAGCAGCAGCA
TCAGCAGCAGCAGCAACAGCAGCAGAGCCACGCACACCCGCGGCTGTCAA
ATGTCGGAGTAGTCAGACCCCTTCCTCCTCCGCTTCCTCCACCTCGTCCT
CCTCCCCTTCCTCCACCTTGTCCTCCTCCTCAACCAAGAGGCCGGGAATA
TGGTCATGCAAAGCCTGTGGCTTGTTGCAAGCGGATCGCTTTGGGCTGCA
TTGTGAATTCTGCTCGGCTGAACGCGAGATACTTCTCCCCTCTCCATCTG
AACGGGGAAGAGGAGGAGAAGGGGGGGAGGAAGGAGGAGGGGAGGAAGGA
GCATCATCGTGTTTTAGAGTGATCAAAGACTATAGTGAATTGGCCGAGGT
ATGGCGGAACAGCAATATAAAAGCAGCTGCAGCGGCGATTCGGCAGCAGC
AGCACCAGCAACAACAAGACCAACAACACCAAGACGAGGAGGAGGAAGAA
GACGAGCAGACCCTAAAGCCAAGCGAAGGATCAAGAGAAGCTGCTGCTGC
TGCTGCTACTGCCGCGACTGCCGTTATGCCTCCCCCACTGCAACCCGAGC
GAGAAAAGCTACTTCTGTCCGTGGAAAGAAAACGACGAGCCGATGCAATC
GCCCTGGAGGCAAGCACCAAAATCGCCACAGGGGAAGGGGAATCCCACTC
CCGGTGGTTCATGGCCGGCACCAGCAAGAGCAATGCCTGGGAGGTGGCGA
ATAAGCAAACGGGAGACTTCTATTACGTGTATAAAGTGCAGGCATTGGAC
AGGATGCTGGGAGCGAAATGGGACAGTCTGCATAGGGGGTGGGAGTGGAT
GAGTAACTCCTGTCGGGTGGCCTTGCGGACGCGGCTATACGCGACAAGGG
AAGAGATTTGTCAGAGGGATGATAGTTTGATCCCAATCACGAGCAGCTTC
CAGCGGTGTGTGAATAAACTGACACAGAGGGACTGGCCGTTGCTGTGGAC
GTGCATGCGGGCGGAACTTTTTCTTCAAGCCGAGGGATTGAGGAGGGATG
TGGTGCGGCACATGCGAGGAAGGGAGGCGCGTTTAGAGGAGAAAGGGGTG
GTGGGTGGGTATCGATATCTCCTACAGGATCTATTGTGGTGTTTCTCGGT
GTACAGCGCCTGGGTCTTTGAAGTGTCGTCGTTTTTCATGAAGATGAACG
ATCAAATCTCGGGAGAGAGGTTCCGGACGACGACGATATGTGGGGAGGGA
GAGAGGGAAGGAGGGGGGGAGAACACATTGTACTTGTCGGAGGTGGCATT
GGTGGCTTTTCGTGAAAATGTTTTGATGCATTTTATGATCCGGACGCCGG
TGATGCGGGCAGTGGAGGGAGAAAGGGAAGGAGAGGGGATGAGATTGGCC
GAGTTTTTTAAGGAGGGCGGCGACGATGGTGGGGGTGGTGGTGGTCGTAG
TGGTGCAGAGGAGGAAGAGGACATAGGAAAGGAAGGGGGAAAGGGGGGAA
AAGGAGGGTGGAAGAGGAAGAGGGAGGGAAGGGGGATGTCGGGCGCGCCT
CGGGCGAGTGCCCAGCAGCAAGAGCTAGTGGAGTCGGAGGAGGGGGAGGT
GGACGACCAAGTTCTTGCGACACGCGTACGATCACATTACGCCACTGGTA
CCACCACCACTGCCACTGCTGCTGCTGCTGGTGATGATGATGATGATGAT
TGTCGACGGGGGTCACACCGAAGGAGGATCACCGCGAACCTAGCGGAGGA
GCTGATCATGTTGGGTAATATGGTCGAAGAATTAGACGTGCTGGAACAGG
GGGGTGGGAAGCAGTCTGAGGCGTTTCGACAGAGGCTGCTGAAACCGTTG
CGGGCCACGCTGGCGGAACTACGCGTGGATGGGCTTGGAGGAGAGGGAGG
AGGTACGGGTGGAGAGGAGCTTGGGTTGAGGGAAGAGGAGGACATGGAGG
GGCCGGAAGTGATGATGACGTTGAACGAAAATGGAGACCAGTTAAGCAGA
GCGCGGGATGGGTTTCGTCGACTTCGTCGAGGGCAGGGTTTATGTGATGA
TAGGGGTGGGAGGGGAAGGAAGCGGATGCGTTTGGTGTAAAAATTAAGTT
ATAGGCCGAGAGGCCATCGCTAAT
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protein sequence of NO24G00420.1

>NO24G00420.1-protein ID=NO24G00420.1-protein|Name=NO24G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1000bp
MASSGIYFDLPGFELLRPVASTSSSSSHFSASASNEPPMLPSSFSTSTSM
SLPTISSVEQAVSQDRRQKQRRLEKDRRFAFSTSTKMTSRDEEEEEEDAG
VRGGVLSLSSLRQELESPWNCVKCTYLNAPQNRSCEACGGLNQWRVRLHE
KNAAATRAHRQQERQAQEQHQERFKDLMELEEEEEENDDDDDDVVVIGDE
GKWNKVSPSSTSPSLISAAAAATAAATAGAPLAVLLRANPVLIHGGGPFR
LLPSDLHLHCLGFLHDHFEYVRLRTVSKAWAGMAEHESLWRPLVERDCGE
LMTRAAAAAAAASAASAAAASAAAATAAEPRTPAAVKCRSSQTPSSSASS
TSSSSPSSTLSSSSTKRPGIWSCKACGLLQADRFGLHCEFCSAEREILLP
SPSERGRGGEGGEEGGGEEGASSCFRVIKDYSELAEVWRNSNIKAAAAAI
RQQQHQQQQDQQHQDEEEEEDEQTLKPSEGSREAAAAAATAATAVMPPPL
QPEREKLLLSVERKRRADAIALEASTKIATGEGESHSRWFMAGTSKSNAW
EVANKQTGDFYYVYKVQALDRMLGAKWDSLHRGWEWMSNSCRVALRTRLY
ATREEICQRDDSLIPITSSFQRCVNKLTQRDWPLLWTCMRAELFLQAEGL
RRDVVRHMRGREARLEEKGVVGGYRYLLQDLLWCFSVYSAWVFEVSSFFM
KMNDQISGERFRTTTICGEGEREGGGENTLYLSEVALVAFRENVLMHFMI
RTPVMRAVEGEREGEGMRLAEFFKEGGDDGGGGGGRSGAEEEEDIGKEGG
KGGKGGWKRKREGRGMSGAPRASAQQQELVESEEGEVDDQVLATRVRSHY
ATGTTTTATAAAAGDDDDDDCRRGSHRRRITANLAEELIMLGNMVEELDV
LEQGGGKQSEAFRQRLLKPLRATLAELRVDGLGGEGGGTGGEELGLREEE
DMEGPEVMMTLNENGDQLSRARDGFRRLRRGQGLCDDRGGRGRKRMRLV*
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Synonyms
Publications