NO24G00380, NO24G00380 (gene) Nannochloropsis oceanica

Overview
NameNO24G00380
Unique NameNO24G00380
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4166
Alignment locationchr24:132670..136835 +

Link to JBrowse

Properties
Property NameValue
DescriptionKRR1 small subunit processome component
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:132670..136835 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036612KH_dom_type_1_sf
IPR024166rRNA_assembly_KRR1
IPR018791UV_resistance/autophagy_Atg14
IPR004087KH_dom
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Homology
BLAST of NO24G00380 vs. NCBI_GenBank
Match: EWM24322.1 (ribosomal rna assembly protein mis3 [Nannochloropsis gaditana])

HSP 1 Score: 456.4 bits (1173), Expect = 2.000e-124
Identity = 227/246 (92.28%), Postives = 235/246 (95.53%), Query Frame = 0
Query:   57 MPGPLLEESSFATLFPKYREKYLREVWPAVTRALEKVGVGCELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVRVLEDDVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCYILVQGNTVATMGSFKGIKQVRKVVVDCMKNVHPIYHIKTLMIKRELAKDPTLAEENWDRFLPQFKKKNVPRQKPQEVRVKKAYTPFPPPQPPSKVDLQLESGEYFLTEHQRKM 303
            MPGPLLEESSFATLFPKYREKYLREVWP VTRALEKVGV CELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAV+VLED+VACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGC+ILVQGNTVA MG +KGIK VR VVVDCMKN+HPIYHIKTLMIKRELAKDPTLA+ENWDRFLPQFKKKNVPR KPQ VR KKAYTPFPPPQ PSK+DLQLESGEYFLTE QRK+
Sbjct:    1 MPGPLLEESSFATLFPKYREKYLREVWPVVTRALEKVGVACELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVKVLEDEVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCFILVQGNTVAAMGPYKGIKLVRNVVVDCMKNIHPIYHIKTLMIKRELAKDPTLAQENWDRFLPQFKKKNVPRHKPQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKL 246          
BLAST of NO24G00380 vs. NCBI_GenBank
Match: KXZ55951.1 (hypothetical protein GPECTOR_2g1502 [Gonium pectorale])

HSP 1 Score: 439.5 bits (1129), Expect = 2.500e-119
Identity = 207/275 (75.27%), Postives = 244/275 (88.73%), Query Frame = 0
Query:   32 RYRREKPWDHAGIDHWKAEEWKPEYMPGPLLEESSFATLFPKYREKYLREVWPAVTRALEKVGVGCELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVRVLEDDVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCYILVQGNTVATMGSFKGIKQVRKVVVDCMKNVHPIYHIKTLMIKRELAKDPTLAEENWDRFLPQFKKKNVPRQKPQEV-----RVKKAYTPFPPPQPPSKVDLQLESGEYFLTEHQRK 302
            ++RREKPWDH GIDHWK + +KPE  P  LLEESSFATLFPKYREKYLREVWPAVT+AL+ VG+GCELN++EGSMTVRTTRKT DPY ++KARDLIKLLARS+P  QA+++L+DD+ CDIIKI GI+RNKE+FVKRRQRL+GP+G+TLKALELLTGCY+LVQGNTVATMG +KG+KQ+R++V DC+KNVHPIYHIKTLMIKRELAKDP LAEENW+RFLP+FKKKNV R+KP+         KK YTPFPPP PPSK+DL LESGEYFL+E Q++
Sbjct:   27 KHRREKPWDHDGIDHWKVDPFKPEDNPNGLLEESSFATLFPKYREKYLREVWPAVTKALKDVGIGCELNLVEGSMTVRTTRKTWDPYAIIKARDLIKLLARSVPAPQALKILQDDMQCDIIKISGIIRNKEKFVKRRQRLIGPNGSTLKALELLTGCYMLVQGNTVATMGPYKGLKQIRRIVEDCVKNVHPIYHIKTLMIKRELAKDPALAEENWERFLPKFKKKNVKRKKPEVADKAAGEKKKVYTPFPPPMPPSKLDLALESGEYFLSEEQKR 301          
BLAST of NO24G00380 vs. NCBI_GenBank
Match: PNW74826.1 (hypothetical protein CHLRE_12g508200v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 434.9 bits (1117), Expect = 6.100e-118
Identity = 212/301 (70.43%), Postives = 253/301 (84.05%), Query Frame = 0
Query:   13 DQEDQRQEDEKEAPRSG---KKRYRREKPWDHAGIDHWKAEEWKPEYMPGPLLEESSFATLFPKYREKYLREVWPAVTRALEKVGVGCELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVRVLEDDVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCYILVQGNTVATMGSFKGIKQVRKVVVDCMKNVHPIYHIKTLMIKRELAKDPTLAEENWDRFLPQFKKKNVPRQKPQ---------EVRVKKAYTPFPPPQPPSKVDLQLESGEYFLTEHQRK 302
            + E   Q   + AP  G   K ++RREKPWDH GIDHWK + +KPE  P  LLEESSFATLFPKYREKYLREVWPAVT+AL+ +G+GCELN++EGSMTVRTTRKT DPY ++KARDLIKLLARS+P  QA+++L+DD+ CDIIKI GI+RNKE+FVKRRQRL+GP+G+TLKALELLTGCY+LVQGNTV+ MG +KG+KQ+R++V DC+KNVHPIYHIKTLMIKRELAKDP LAEENWDRFLP+FKKKNV R+KP+         +   KK YTPFPPP PPSK+DLQLESGEYFL+E Q++
Sbjct:    4 EPETAEQPAGEVAPSEGGKKKGKHRREKPWDHDGIDHWKVDAFKPEDNPNGLLEESSFATLFPKYREKYLREVWPAVTKALKDMGIGCELNLVEGSMTVRTTRKTWDPYAIIKARDLIKLLARSVPAPQALKILQDDMQCDIIKISGIIRNKEKFVKRRQRLIGPNGSTLKALELLTGCYMLVQGNTVSAMGPYKGLKQLRRIVEDCIKNVHPIYHIKTLMIKRELAKDPALAEENWDRFLPKFKKKNVKRKKPEAKPADEAGGKEAAKKVYTPFPPPMPPSKMDLQLESGEYFLSEEQKR 304          
BLAST of NO24G00380 vs. NCBI_GenBank
Match: XP_005846376.1 (hypothetical protein CHLNCDRAFT_58322 [Chlorella variabilis] >EFN54274.1 hypothetical protein CHLNCDRAFT_58322 [Chlorella variabilis])

HSP 1 Score: 428.3 bits (1100), Expect = 5.700e-116
Identity = 209/286 (73.08%), Postives = 248/286 (86.71%), Query Frame = 0
Query:   15 EDQRQEDEKEAPRSGKKRYRREKPWDHAGIDHWKAEEWKPEYMPGPLLEESSFATLFPKYREKYLREVWPAVTRALEKVGVGCELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVRVLEDDVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCYILVQGNTVATMGSFKGIKQVRKVVVDCMKNVHPIYHIKTLMIKRELAKDPTLAEENWDRFLPQFKKKNVPRQKPQEVRVKKAYTPFPPPQPPSKVDLQLESGEYFLTEHQR 301
            E+Q   D +  PR  K +++++KPWDH GIDHWK E +K E  P  LLEESSFATLFPKYREKYLREVWPAVT+AL++ G+ CELN++EGSMTVRTTRKT DP++++KARDLIKLLARS     A++VLED+V CD+IKIGGIVRNKE+FVKRRQRL+GP+GATLKALELLTGCYILVQGNTV+ MG +KG+KQVR++V DC++NVHPIYHIKTLMIKRELAKDP LAEENW+RFLP FKKKNV R+KP++VR +K YTPFPPPQPPSK DL LESGEYFL+  Q+
Sbjct:   12 EEQHAADGERPPRK-KGKHKKDKPWDHEGIDHWKIEPFKKEDNPSGLLEESSFATLFPKYREKYLREVWPAVTKALKEQGIACELNLVEGSMTVRTTRKTYDPFIILKARDLIKLLARS-----ALKVLEDEVQCDVIKIGGIVRNKEKFVKRRQRLIGPNGATLKALELLTGCYILVQGNTVSAMGDYKGLKQVRRIVEDCVRNVHPIYHIKTLMIKRELAKDPALAEENWERFLPNFKKKNVQRKKPKKVRERKDYTPFPPPQPPSKEDLMLESGEYFLSAEQK 291          
BLAST of NO24G00380 vs. NCBI_GenBank
Match: XP_008876312.1 (hypothetical protein H310_11407 [Aphanomyces invadans] >ETV95139.1 hypothetical protein H310_11407 [Aphanomyces invadans])

HSP 1 Score: 421.4 bits (1082), Expect = 7.000e-114
Identity = 204/282 (72.34%), Postives = 240/282 (85.11%), Query Frame = 0
Query:   23 KEAPRSGKKRYRREKPWDHAGIDHWKAEEWKPEYMPGPLLEESSFATLFPKYREKYLREVWPAVTRALEKVGVGCELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVRVLEDDVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCYILVQGNTVATMGSFKGIKQVRKVVVDCMKNVHPIYHIKTLMIKRELAKDPTLAEENWDRFLPQFKKKNVPRQKPQEVRVKKAYTPFPPPQPPSKVDLQLESGEYFLTEHQRKMKK 305
            ++AP+S  K++R++KPWD   I HWK E WK E     +LEESSFATLFPKYREKYLREVWP VT+AL+ V + CELN+IEGSMTVRTTRKT+DPY+V+KARDLIKLLARSIPV QAV++L+D+V CDIIKIGG+VRNKERFVKRRQRLVGPDGATLKA+ELLT CY+LVQGNTV+ MG + G++ VRK+V DC +NVHPIY+IKTLMIKREL+KDP LA ENWDRFLP FKKKNV  +KP  VR KKAYTPFPP   PSK+D ++ESGEYF+ EH+RK  K
Sbjct:    4 EDAPKS--KKHRKDKPWDSDDIAHWKVESWKDEDNKSGMLEESSFATLFPKYREKYLREVWPIVTKALDSVKIACELNLIEGSMTVRTTRKTTDPYIVLKARDLIKLLARSIPVNQAVKILDDEVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGPYGGLRHVRKIVEDCFQNVHPIYNIKTLMIKRELSKDPKLAGENWDRFLPVFKKKNVQTKKPHVVREKKAYTPFPPAPTPSKIDKEIESGEYFMKEHERKAMK 283          
BLAST of NO24G00380 vs. NCBI_GenBank
Match: XP_007508899.1 (ribosomal RNA assembly protein mis3 [Bathycoccus prasinos] >CCO19985.1 ribosomal RNA assembly protein mis3 [Bathycoccus prasinos])

HSP 1 Score: 421.0 bits (1081), Expect = 9.100e-114
Identity = 200/285 (70.18%), Postives = 244/285 (85.61%), Query Frame = 0
Query:   20 EDEKEAPRSGKKRYRREKPWDHAGIDHWKAEEWKPEYMPGPLLEESSFATLFPKYREKYLREVWPAVTRALEKVGVGCELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVRVLEDDVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCYILVQGNTVATMGSFKGIKQVRKVVVDCMKNVHPIYHIKTLMIKRELAKDPTLAEENWDRFLPQFKKKNVPRQKPQEVRVKKAYTPFPPPQPPSKVDLQLESGEYFLTEHQRKMKK 305
            E+E+E  +  K RYRREKPWDHAGIDHW   ++  E  P  LL+ESSFATLFPKYREKYLR+VWP++T+AL+ VGVGCELN++EGSMTVRTTRKT DPY+++KARDLIKLL+RS+P  QA++VL DD  CD+IKIGG+VRNKERFVKRRQRLVGP+G+TLKA+E+LT CY+L+QGNTV+ MGSFKG+K  RK+V D MKNVHPIYHIK LMIKREL KDP L  ++WDRFLP+FKKKNV R+KP+ V+ KKA + FPP Q PSK+DLQ+ESGEYFL++  ++MKK
Sbjct:   13 EEEQEQNQGKKGRYRREKPWDHAGIDHWDVPKFTKEDNPHGLLDESSFATLFPKYREKYLRDVWPSITKALKDVGVGCELNLVEGSMTVRTTRKTWDPYIIIKARDLIKLLSRSVPAPQALKVLSDDTQCDVIKIGGLVRNKERFVKRRQRLVGPNGSTLKAIEMLTDCYVLIQGNTVSAMGSFKGLKTCRKIVEDAMKNVHPIYHIKELMIKRELEKDPELKNQSWDRFLPKFKKKNVKRKKPEYVKEKKARSVFPPAQMPSKIDLQIESGEYFLSQEAKQMKK 297          
BLAST of NO24G00380 vs. NCBI_GenBank
Match: EWM24299.1 (hypothetical protein Naga_100047g10 [Nannochloropsis gaditana])

HSP 1 Score: 421.0 bits (1081), Expect = 9.100e-114
Identity = 231/403 (57.32%), Postives = 273/403 (67.74%), Query Frame = 0
Query:  437 AGDRLSCAGCVKNTLYYKQQAVAYKKLALRDAYEQAKVVLTGRQPIFEEEQAVADLTRRQGEMRRRLQETAESVRDLRIALARKTXXXXXXXXXXXXXXXXXXXXXXQQESQSFPVLKGLEWYREQAMEALRQRMWTRVLEHFVIFPIEADVPGLVR------------PPSLPPSLSASSSKQNQPQQLQSRGRHFHNSNLLPGVSTIAGLPVPNSGLYSELGLPDEVCEAALYLVARVTWSLANTLGVELPHPLRFPAGKPYALVMEDGKGRTEFALSPSIYASSSTTTTNSTNSIGRSRHTPLIIKRDCGRE---EEGTDPFSLALEALQFNVHRLAISPTAVGVDASELFGKEALLLNLWAIQRQAARVVKAYEGFPDVPLPQLKEGRRGERKEAEVRG 825
            A D LSC+GCVKN LYYKQQA+AYKK++LRDAYEQAK VLT  QP+F E+QA+A L RRQGE++ RLQETAE VRDLR+A+ARKT                       Q SQS PV +GL WY+EQ ME ++QR+WTRVLEHFV+FPIEAD+P  V             PP  PPS +++  K                   L GVSTI GLP+PN+G Y ELGLPDEVCE ALYLVARVTWSLA TLG+ LPHPLRFPAGK YAL+ ED + RTEFALSPS Y       +N+T++    RH P    R  G E    +GTDPFSL +EALQ NVH+LA+SP  VGVDA EL+GKEA+LLNLWA+QR+AA VVKAYEG PDVPLP+++ GR   + E    G
Sbjct:   12 AADGLSCSGCVKNNLYYKQQAIAYKKMSLRDAYEQAKSVLTTNQPVFREQQALAALMRRQGELKTRLQETAERVRDLRLAVARKTFALEERRKAVDVARQRLEEVKRWQGSQSTPVQQGLRWYKEQTMEVVQQRVWTRVLEHFVVFPIEADIPVHVSGKGTQEQAPAFIPPPCPPSRASAGPKP------------------LTGVSTIVGLPLPNAGNYRELGLPDEVCETALYLVARVTWSLAETLGMRLPHPLRFPAGKSYALIAEDAQRRTEFALSPSFYHGGG--RSNATSTAPAYRHPP---SRRRGAECAGADGTDPFSLGVEALQLNVHQLAVSPAGVGVDARELWGKEAVLLNLWAVQRRAAEVVKAYEGLPDVPLPRVERGRMEGKAEGATGG 391          
BLAST of NO24G00380 vs. NCBI_GenBank
Match: XP_012194417.1 (hypothetical protein SPRG_00811 [Saprolegnia parasitica CBS 223.65] >KDO34750.1 hypothetical protein SPRG_00811 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 419.9 bits (1078), Expect = 2.000e-113
Identity = 202/281 (71.89%), Postives = 238/281 (84.70%), Query Frame = 0
Query:   24 EAPRSGKKRYRREKPWDHAGIDHWKAEEWKPEYMPGPLLEESSFATLFPKYREKYLREVWPAVTRALEKVGVGCELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVRVLEDDVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCYILVQGNTVATMGSFKGIKQVRKVVVDCMKNVHPIYHIKTLMIKRELAKDPTLAEENWDRFLPQFKKKNVPRQKPQEVRVKKAYTPFPPPQPPSKVDLQLESGEYFLTEHQRKMKK 305
            E P+S  K++R++KPWD A + HWK ++WK E  P  +LEESSFATLFPKYREKYLREVWP VT+AL+   + CELN+IEGSMTVRTT+KTSDPY+V+KARDLIKLLARSIPV QA+++LED+V CDIIKIGG+VRNKERFVKRRQRLVGPDGATLKA+ELLT CY+LVQGNTV+ MG + G++ VRK+V DC  NVHPIY+IKTLMIKREL+KDP L  ENWDRFLP FKKKNV  +KP  VR K+ YTPFPP Q PSKVD ++ESGEYF+ EH+RK  K
Sbjct:    3 EPPKS--KKHRKDKPWDTADVAHWKVDQWKDEENPTGMLEESSFATLFPKYREKYLREVWPIVTKALDAFKIVCELNLIEGSMTVRTTKKTSDPYIVLKARDLIKLLARSIPVNQAIKILEDEVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGPYSGLRHVRKIVEDCFHNVHPIYNIKTLMIKRELSKDPALQGENWDRFLPVFKKKNVQTKKPHTVREKREYTPFPPAQMPSKVDKEIESGEYFMKEHERKAMK 281          
BLAST of NO24G00380 vs. NCBI_GenBank
Match: XP_017993172.1 (ribosomal rna assembly protein mis3 [Malassezia pachydermatis] >KOS15540.1 ribosomal rna assembly protein mis3 [Malassezia pachydermatis])

HSP 1 Score: 418.7 bits (1075), Expect = 4.500e-113
Identity = 197/282 (69.86%), Postives = 241/282 (85.46%), Query Frame = 0
Query:   20 EDEKEAPRSGKKRYRREKPWDHAGIDHWKAEEWKPEYMPGPLLEESSFATLFPKYREKYLREVWPAVTRALEKVGVGCELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVRVLEDDVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCYILVQGNTVATMGSFKGIKQVRKVVVDCMKNVHPIYHIKTLMIKRELAKDPTLAEENWDRFLPQFKKKNVPRQKPQEVRVKKAYTPFPPPQPPSKVDLQLESGEYFLTEHQRK 302
            ED   AP +  KR+R++KPWD   IDHW+ +++  E  P P LEESSFATLFPKYREKYLRE+W  VT ALEK GV C L+++EGSM+VRTTRKT DPY++++ARDLIKLL+RS+P  QAV++L+DD+ACD+IKIG IVRNKERFVKRRQRL+GP+G TLKA+ELLTGCY+LVQGNTV+ MGS+K +K+VR++V+DCMKN+HPIYHIK LMIKRELAKDP LA E+WDRFLP+FKK+NV  +KP+E   KK YTPFPPPQ PSK+DLQLESGEYFL  H++K
Sbjct:    4 EDNASAPMNKNKRFRKDKPWDTDDIDHWRIDKFTQEDNPHPFLEESSFATLFPKYREKYLREIWGHVTTALEKHGVACTLDLVEGSMSVRTTRKTFDPYIILRARDLIKLLSRSVPFTQAVKILQDDMACDVIKIGNIVRNKERFVKRRQRLIGPNGNTLKAIELLTGCYVLVQGNTVSAMGSYKSLKEVRRIVLDCMKNIHPIYHIKELMIKRELAKDPKLATESWDRFLPKFKKQNVKTKKPKETPKKKEYTPFPPPQQPSKIDLQLESGEYFLKPHEKK 285          
BLAST of NO24G00380 vs. NCBI_GenBank
Match: XP_001690845.1 (predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 417.5 bits (1072), Expect = 1.000e-112
Identity = 203/289 (70.24%), Postives = 242/289 (83.74%), Query Frame = 0
Query:   32 RYRREKPWDHAGIDHWKAEEWKPEYMPGPLLEESSFATLFPKYREKYLREVWPAVTRALEKVGVGCELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARS-IP---------VQQAVRVLEDDVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCYILVQGNTVATMGSFKGIKQVRKVVVDCMKNVHPIYHIKTLMIKRELAKDPTLAEENWDRFLPQFKKKNVPRQKPQ---------EVRVKKAYTPFPPPQPPSKVDLQLESGEYFLTEHQRK 302
            ++RREKPWDH GIDHWK + +KPE  P  LLEESSFATLFPKYREKYLREVWPAVT+AL+ +G+GCELN++EGSMTVRTTRKT DPY ++KARDLIKLLARS +P         +  ++   +DD+ CDIIKI GI+RNKE+FVKRRQRL+GP+G+TLKALELLTGCY+LVQGNTV+ MG +KG+KQ+R++V DC+KNVHPIYHIKTLMIKRELAKDP LAEENWDRFLP+FKKKNV R+KP+         +   KK YTPFPPP PPSK+DLQLESGEYFL+E Q++
Sbjct:    1 QHRREKPWDHDGIDHWKVDAFKPEDNPNGLLEESSFATLFPKYREKYLREVWPAVTKALKDMGIGCELNLVEGSMTVRTTRKTWDPYAIIKARDLIKLLARSEVPSADVLSACALAVSISTQQDDMQCDIIKISGIIRNKEKFVKRRQRLIGPNGSTLKALELLTGCYMLVQGNTVSAMGPYKGLKQLRRIVEDCIKNVHPIYHIKTLMIKRELAKDPALAEENWDRFLPKFKKKNVKRKKPEAKPADEAGGKEAAKKVYTPFPPPMPPSKMDLQLESGEYFLSEEQKR 289          
The following BLAST results are available for this feature:
BLAST of NO24G00380 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM24322.12.000e-12492.28ribosomal rna assembly protein mis3 [Nannochlorops... [more]
KXZ55951.12.500e-11975.27hypothetical protein GPECTOR_2g1502 [Gonium pector... [more]
PNW74826.16.100e-11870.43hypothetical protein CHLRE_12g508200v5 [Chlamydomo... [more]
XP_005846376.15.700e-11673.08hypothetical protein CHLNCDRAFT_58322 [Chlorella v... [more]
XP_008876312.17.000e-11472.34hypothetical protein H310_11407 [Aphanomyces invad... [more]
XP_007508899.19.100e-11470.18ribosomal RNA assembly protein mis3 [Bathycoccus p... [more]
EWM24299.19.100e-11457.32hypothetical protein Naga_100047g10 [Nannochlorops... [more]
XP_012194417.12.000e-11371.89hypothetical protein SPRG_00811 [Saprolegnia paras... [more]
XP_017993172.14.500e-11369.86ribosomal rna assembly protein mis3 [Malassezia pa... [more]
XP_001690845.11.000e-11270.24predicted protein, partial [Chlamydomonas reinhard... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL039nonsL039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR026ngnoR026Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK002876NSK002876Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00380.1NO24G00380.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|545039gene_7265Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100047g9gene6151Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00380.1NO24G00380.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00380 ID=NO24G00380|Name=NO24G00380|organism=Nannochloropsis oceanica|type=gene|length=4166bp
ATGAGCACCGCCATCGACAACGAGGACATGGTATTAGACCAGGAGGATCA
GAGGCAAGAGGACGAGAAGGAGGCGCCGCGATCAGgtatgtacgatgggt
gggggtggctggggcatgaccatacaaggccaaggatactatgggcagat
tgaatgaatagatgcaagctttccacgcactagatgatctaaaccagtca
accctgaaaagggtagcgtacggaaggggtggcaacagcgtcgcggggtt
gcgggaatgaaggacgaccagaatacgagagatgctgctccgatcccccc
tctatcacggtcgttgccactccgctctatcccggaatgccagcttgtat
acgcaggaaggctcctcaccagagaaacgcggcagacttagacagcagta
gtaggatctttgttgagtggtcggcaggcgcggctctcgcgctctactct
ctcattttggagtccattccaccatcctaccccaccctaacccatcacta
cagGCAAAAAACGTTACCGACGCGAGAAACCCTGGGACCATGCAGGAATC
GACCACTGGAAAGCGGAAGAATGGAAGCCTGAATACATGCCAGGCCCGCT
ACTGGAAGAAAGTTCGTTCGCCACGCTTTTTCCCAAGTATAGGGAGAAAT
ATTTGCGCGAGGTCTGGCCGGCCGTGACAAGGGCGTTGGAAAAAGTGGGA
GTAGGGTGTGAACTGAACATTATCGAGGGATCCATGACGGTGCGGACGAC
GAGGAAGACCTCGGATCCATATGTGGTGGTTAAGGCTAGgtatgtttgag
ctttgtgcctgtcctcctttctctccctccctccctccctccccccccct
ccttttccgcccgcttgatcgacccttctctcccccctttttccttttaa
aaacatatctaagAGATTTGATCAAGTTGCTAGCCCGCTCCATCCCCGTG
CAGCAAGCCGTGCGTGTGTTGGAAGATGACGTAGCTTGCGATATTATTAA
AATTGGGGGCATCGTGCGGAACAAGGAGCGGTTTGTGAAACGGCGGCAAC
GGCTGGTCGGACCTGATGGAGCCACGCTTAAGgtaccaaaatacaggggg
cgagagagtaaagggtatttattattttatgtcattgctacccgggacga
gtcagtcaaacacacaagctcactatcccctttggtttaccctctcatca
tcctcatgatttatttgtcaagGCCCTGGAGCTGCTGACCGGCTGCTACA
TCCTCGTGCAAGGCAACACGGTGGCGACCATGGGCTCGTTTAAGGGCATC
AAGCAAGTGCGCAAGGTGGTGGTGGACTGCATGAAGAACGTCCATCCCAT
CTACCATATTAAGACCCTCATGATCAAGCGTGAGCTCGCCAAGGATCCTA
CGCTGGCCGAGGAGAACTGGGACCGGTTTTTGCCGCAGTTTAAGAAGAAG
AACGTGCCGCGGCAGAAGCCGCAGGAGGTAAGGGTGAAGAAGGCCTACAC
GCCCTTCCCCCCTCCTCAACCTCCTTCGAAGGTAGACCTGCAATTGGAGA
GCGGTGAGTATTTCCTGACTGAACACCAGCGAAAGATGAAGAAGAAAGGG
GAGAAGCAGGCTGAGTCGGCGGAGAGGGCGGGGAAGAGGAGGGAAGAGCG
AGAGCAGGAGTTTGTCGCCCCCGCGGAGGATCAAGGAGAGGGAGTGGGAG
GGGGAGGGAAGAAGAAAAAGAAGAGGAAGAAGATACAACGGTCCGGGATG
AACCAGGAGGATAGTCTTGAAGAAGTAGAAGTAGACGCTGGAGAGAAGAA
GAAGGAGAAGAAGGAGAAGGGTAACAACCAAAACAAGCGGAGCTTGCGGG
AGATGACGGAGGGGCTGGCGCAAAAGAGCAGAGGCAAGACGGGGGAAGGT
GGAGGGGCAGTGTCGAAGAAAGACCACGAGGACACATACCTTGAGCAACA
GCAGGAGGCTCCGGCGGTGAGCAAGAAGAAGAAGAAGGGgtagggttgga
agggtgggaggttggggagggagtctcgggctaaaaatagagaaacagcc
agaaagaaacaaaaccagaagttgaatcatcaccatgagaccgcattata
tggaggcgtttttgtgtcttggttagtgcgcattgtgtctcggttttgtg
ggttttgtgtcaggtaggaggtccgtcatctgttcgttccgctctgtgca
cgtcatgtgcgccttatacagagcatacagacaacgaaataatccctctt
cgtacacacacgatacaggcgcgttcatgaaaaagtaaagaaagtacatc
cacctatatccatatcacaagcccgtccatgaacgaatgtcccttgtgtc
gtgccagCGCGGGGGACAGGTTGTCCTGTGCGGGGTGCGTCAAGAACACA
CTCTACTACAAGCAGCAGGCCGTCGCGTACAAGAAGTTGGCCCTGCGGGA
CGCATACGAACAAGCTAAGGTGGTTTTGACGGGACGGCAGCCCATCTTTG
AGGAGGAGCAGGCTGTGGCAGATTTGACGCGGCGGCAAGGGGAGATGCGG
AGACGCTTGCAAGAGgtgggcgtgaggatcgagggagagggaaagcagat
gcgtgagacgggaccttgccagccacaaggcgaaaggcgccactgctcac
tctttccagagctcgagtgtaatttgtaactccccctctccattttatcc
ccttttttctgaaacagACGGCCGAGAGCGTTCGAGACTTGCGCATTGCC
CTGGCCCGTAAGACCTTTTCGGTGAATGAACGCCGGCGGGCCTTGGCATC
AGCCATGAGCAAATTAGACGAAGCTAAACGTCAACAAGAAAGCCAGTCCT
TCCCTGTGCTGAAGGGGCTGGAATGGTACAGAGAGCAAGCGATGGAAGCG
CTGCGGCAGCGGATGTGGACGAGGGTCTTGGAGCATTTTGTGATCTTTCC
GATCGAGGCCGACGTGCCTGGCCTTGTCCGTCCTCCCTCCCTTCCTCCCT
CTCTTTCGGCATCCAGTAGCAAGCAGAACCAGCCGCAACAGCTACAGTCA
AGGGGTCGTCATTTTCATAATTCCAATCTGCTGCCGGGCGTCAGTACTAT
TGCCGGCTTGCCAGTGCCCAACTCGGGATTGTACTCTGgtaagtgagcgt
gtgaagaagggaggtggggggaccaggaacgcgagaagagaagagaatca
atgggatgttgatgtaaacatgtgtgtctcgctggcgttagagtgaatag
gaggcaggtagtgtgcttattatcctttctcttctattcccaagAACTTG
GTCTTCCCGACGAGGTCTGCGAAGCAGCTCTTTACCTAGTGGCGCGCGTG
ACCTGGTCGTTAGCCAACACGTTAGGAGTGGAATTGCCTCATCCATTGCG
ATTTCCAGCAGGCAAGCCTTATGCCTTAGTGATGGAGGATGGAAAGGGAC
Ggtgcgtggagggagggagggagggagtgacggagggacagagaaaggga
gcctccctcgtattttacggctttccaagtcgtcagctatttttaaatcc
tccttctctgcctctcacacactgtcggcacaaaaacagCACCGAGTTCG
CCCTCAGTCCCTCTATCTACGCCAGCAGCAGCACCACCACCACCAATAGC
ACCAACAGTATCGGCAGAAGCAGACACACCCCTCTCATCATAAAAAGGGA
TTGTGGGAGGGAGGAAGAGGGCACCGACCCCTTTTCCCTCGCTCTGGAGG
CATTGCAGTTTAACGTGCATCGTCTCGCTATCTCCCCTACTGCGGTCGGT
GTGGACGCGTCGGAGTTATTCGGGAAAGAAGCCCTCTTATTGAACCTGTG
GGCCATCCAACGGCAAGCTGCTCGGGTCGTCAAAGCATATGAGGGATTTC
CTGATGTGCCTTTGCCCCAACTAAAAGAAGGGAGGAGGGGAGAGAGGAAA
GAGGCCGAAGTAAGGGGGCAGCATCAGCAGCAGTGTCATCAGCAGCAGCA
CGAGCAGGAAGGTGGATGTCAGCAACATCGGCACCAGCTGCACGGGGGGG
CGCCGAGGGTGGTTTTTGAGGACAGGGAGGGATCGGAATGGAGCTTGGTG
GAGCTGCAGAATCAGGTGGATGCTTTTGGAGGAGGAGTTGGAGGAAGGGG
AGGAGAAGGACGGTGA
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protein sequence of NO24G00380.1

>NO24G00380.1-protein ID=NO24G00380.1-protein|Name=NO24G00380.1|organism=Nannochloropsis oceanica|type=polypeptide|length=890bp
MSTAIDNEDMVLDQEDQRQEDEKEAPRSGKKRYRREKPWDHAGIDHWKAE
EWKPEYMPGPLLEESSFATLFPKYREKYLREVWPAVTRALEKVGVGCELN
IIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVRVLEDDVACD
IIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCYILVQGNTVATM
GSFKGIKQVRKVVVDCMKNVHPIYHIKTLMIKRELAKDPTLAEENWDRFL
PQFKKKNVPRQKPQEVRVKKAYTPFPPPQPPSKVDLQLESGEYFLTEHQR
KMKKKGEKQAESAERAGKRREEREQEFVAPAEDQGEGVGGGGKKKKKRKK
IQRSGMNQEDSLEEVEVDAGEKKKEKKEKGNNQNKRSLREMTEGLAQKSR
GKTGEGGGAVSKKDHEDTYLEQQQEAPAVSKKKKKGAGDRLSCAGCVKNT
LYYKQQAVAYKKLALRDAYEQAKVVLTGRQPIFEEEQAVADLTRRQGEMR
RRLQETAESVRDLRIALARKTFSVNERRRALASAMSKLDEAKRQQESQSF
PVLKGLEWYREQAMEALRQRMWTRVLEHFVIFPIEADVPGLVRPPSLPPS
LSASSSKQNQPQQLQSRGRHFHNSNLLPGVSTIAGLPVPNSGLYSELGLP
DEVCEAALYLVARVTWSLANTLGVELPHPLRFPAGKPYALVMEDGKGRTE
FALSPSIYASSSTTTTNSTNSIGRSRHTPLIIKRDCGREEEGTDPFSLAL
EALQFNVHRLAISPTAVGVDASELFGKEALLLNLWAIQRQAARVVKAYEG
FPDVPLPQLKEGRRGERKEAEVRGQHQQQCHQQQHEQEGGCQQHRHQLHG
GAPRVVFEDREGSEWSLVELQNQVDAFGGGVGGRGGEGR*
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Synonyms
Publications