NO24G00360, NO24G00360 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO24G00360
Unique Name	NO24G00360
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3235
Alignment location	chr24:125392..128626 -

Link to JBrowse

Properties


Property Name	Value
Description	Succinate-CoA ligase subunit beta

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr24	genome	chr24:125392..128626 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding
GO:0005524	ATP binding
GO:0003824	catalytic activity
GO:0003824	catalytic activity
GO:0000166	nucleotide binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006099	tricarboxylic acid cycle
GO:0008152	metabolic process
GO:0006091	generation of precursor metabolites and energy

Vocabulary: **INTERPRO**
Term	Definition
IPR016102	Succinyl-CoA_synth-like
IPR011761	ATP-grasp
IPR005809	Succ_CoA_synthase_bsu
IPR013650	ATP-grasp_succ-CoA_synth-type
IPR005811	CoA_ligase

Vocabulary: **Cellular Component**
Term	Definition
GO:0005739	mitochondrion

Homology

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BLAST of NO24G00360 vs. NCBI_GenBank
Match: EWM24301.1 (succinate- ligase [Nannochloropsis gaditana])

HSP 1 Score: 783.9 bits (2023), Expect = 2.700e-223
Identity = 402/445 (90.34%), Postives = 423/445 (95.06%), Query Frame = 0

Query:    1 MFRAVLNKVRLAGANKKALVRGQQARMLNVHEYISMDIMKSYGINTPQGQVVSSVEEAEHVYANTLNKGDTVVKAMVLSGGRGLGTFRNGFKGGVHLATNLKDVKKMTEAMLGQKLVTKQSGPDGIICNKVLLVERLYMRREMYLSIMMDRSTQGPVIVASPVGGTSIEDVAASNPEKIFTEAVDIMEGLKEETALGIATKIGLEPGTATHAAGADLVKKLYKMMIATDATLVEINPLAETSDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMATMDIIKLKGGDPANFLDVGGGASEDQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVEEAQKLIQASGFRMIVEDELGEAATKAVAIANIVKQAEDVKIDVTVNDPSFLPL 446
            M+RA++N  RL+GA +KAL+RGQQARMLNVHEYISMDIMK YGI TP GQVVSSV+EAEHVY N LNKGD VVKA VLSGGRGLGTF+NGFKGGVHLAT L DVKK TE+MLGQ LVTKQSGP GI+CNKVLLVERLYMRREMYLSIMMDR+TQGP+IVASPVGGTSIEDVAASNPEKIFTE +DIMEGL EE A GIATKIGLEPGTATHAAGADLVK+LYKMMIATDATLVEINPLAET+DGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAM+TMDIIKLKGGDPANFLDVGGGA+E+QVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNV+EAQKLIQASGFRMIV DEL EAATKAVAIANIVKQAEDVKIDV VN+P+FLPL
Sbjct:    1 MYRAIMNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQAEDVKIDVQVNNPTFLPL 445

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BLAST of NO24G00360 vs. NCBI_GenBank
Match: EWM24300.1 (succinate- ligase [Nannochloropsis gaditana])

HSP 1 Score: 753.8 bits (1945), Expect = 3.000e-214
Identity = 387/427 (90.63%), Postives = 406/427 (95.08%), Query Frame = 0

Query:    1 MFRAVLNKVRLAGANKKALVRGQQARMLNVHEYISMDIMKSYGINTPQGQVVSSVEEAEHVYANTLNKGDTVVKAMVLSGGRGLGTFRNGFKGGVHLATNLKDVKKMTEAMLGQKLVTKQSGPDGIICNKVLLVERLYMRREMYLSIMMDRSTQGPVIVASPVGGTSIEDVAASNPEKIFTEAVDIMEGLKEETALGIATKIGLEPGTATHAAGADLVKKLYKMMIATDATLVEINPLAETSDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMATMDIIKLKGGDPANFLDVGGGASEDQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVEEAQKLIQASGFRMIVEDELGEAATKAVAIANIVKQ 428
            M+RA++N  RL+GA +KAL+RGQQARMLNVHEYISMDIMK YGI TP GQVVSSV+EAEHVY N LNKGD VVKA VLSGGRGLGTF+NGFKGGVHLAT L DVKK TE+MLGQ LVTKQSGP GI+CNKVLLVERLYMRREMYLSIMMDR+TQGP+IVASPVGGTSIEDVAASNPEKIFTE +DIMEGL EE A GIATKIGLEPGTATHAAGADLVK+LYKMMIATDATLVEINPLAET+DGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAM+TMDIIKLKGGDPANFLDVGGGA+E+QVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNV+EAQKLIQASGFRMIV DEL EAATKAVAIANIVKQ
Sbjct:    1 MYRAIMNSARLSGAKQKALLRGQQARMLNVHEYISMDIMKGYGIATPTGQVVSSVDEAEHVYVNMLNKGDAVVKAQVLSGGRGLGTFKNGFKGGVHLATTLGDVKKFTESMLGQHLVTKQSGPAGIVCNKVLLVERLYMRREMYLSIMMDRTTQGPMIVASPVGGTSIEDVAASNPEKIFTEPIDIMEGLSEEAAAGIATKIGLEPGTATHAAGADLVKRLYKMMIATDATLVEINPLAETNDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVDEAQKLIQASGFRMIVVDELEEAATKAVAIANIVKQ 427

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BLAST of NO24G00360 vs. NCBI_GenBank
Match: GAX22577.1 (succinyl-CoA synthetase beta subunit [Fistulifera solaris])

HSP 1 Score: 538.1 bits (1385), Expect = 2.600e-149
Identity = 277/415 (66.75%), Postives = 333/415 (80.24%), Query Frame = 0

Query:   26 RMLNVHEYISMDIMKSYGINTPQGQVVSSVEEAEHVYANTLNK-----GDTVVKAMVLSGGRGLGTFRNGFKGGVHLATNLKDVKKMTEAMLGQKLVTKQSGPDGIICNKVLLVERLYMRREMYLSIMMDRSTQGPVIVASPVGGTSIEDVAASNPEKIFTEAVDIMEGLKEETALGIATKIGLEPGTATHAAGADLVKKLYKMMIATDATLVEINPLAETSDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMATMDIIKLKGGDPANFLDVGGGASEDQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVEEAQKLIQASGFRMIVEDELGEAATKAVAIANIVKQAEDVKIDV 436
            R LNVHEY+SM+IM+++GI TP   V S+ EEAE ++ + LNK      D V+KA VLSGGRGLG F++GFKGGVH+ T     +   ++MLG++LVTKQ+ P+GIICNKVLL+ER+YMR EMYLSI+MDR++QGP++VASP GGTSIEDVAA+NPE IFT+ +DI  GL +E A  +A  +GLEPG+  HA    L+K LY M IA D T VE+NPLAET  G IV  DAK+NFDDNAE+RQ  IFA+RD TQEDPREV A +YDLNYIGL GNIGCMVNGAGLAM+TMDII+LKGG PANFLDVGGGASE QV KAFEILNADPKVK ILVNIFGGIMRCDVIA GIL+A K+IG+ KPIVIRLQGTNV++A+ LI+ S +RMI+ D+L  AA KAV +A IV QAE +++DV
Sbjct:   23 RHLNVHEYVSMEIMQAHGIKTPNCSVASTPEEAEQIFVHKLNKPGTPLQDVVIKAQVLSGGRGLGHFKSGFKGGVHMVTKAGQARDFAKSMLGEELVTKQA-PNGIICNKVLLMERMYMRNEMYLSILMDRASQGPLMVASPRGGTSIEDVAATNPEVIFTQPIDITVGLTDEQAQRMAGNLGLEPGSEGHAQAVTLMKNLYNMFIACDCTQVEVNPLAETPSGDIVVCDAKVNFDDNAEFRQTGIFARRDTTQEDPREVAASEYDLNYIGLDGNIGCMVNGAGLAMSTMDIIQLKGGSPANFLDVGGGASEQQVQKAFEILNADPKVKAILVNIFGGIMRCDVIANGILNAVKEIGISKPIVIRLQGTNVDKAKTLIEGSPYRMILADDLEAAAEKAVGVAEIVAQAEKIEVDV 436

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BLAST of NO24G00360 vs. NCBI_GenBank
Match: GAX10691.1 (succinyl-CoA synthetase beta subunit [Fistulifera solaris])

HSP 1 Score: 537.7 bits (1384), Expect = 3.400e-149
Identity = 277/415 (66.75%), Postives = 333/415 (80.24%), Query Frame = 0

Query:   26 RMLNVHEYISMDIMKSYGINTPQGQVVSSVEEAEHVYANTLNKG-----DTVVKAMVLSGGRGLGTFRNGFKGGVHLATNLKDVKKMTEAMLGQKLVTKQSGPDGIICNKVLLVERLYMRREMYLSIMMDRSTQGPVIVASPVGGTSIEDVAASNPEKIFTEAVDIMEGLKEETALGIATKIGLEPGTATHAAGADLVKKLYKMMIATDATLVEINPLAETSDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMATMDIIKLKGGDPANFLDVGGGASEDQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVEEAQKLIQASGFRMIVEDELGEAATKAVAIANIVKQAEDVKIDV 436
            R LNVHEY+SM+IM+++GI TP   V S+ EEAE ++ + LNK      D V+KA VLSGGRGLG F++GFKGGVH+ T     +   ++MLG++LVTKQ+ P+GIICNKVLL+ER+YMR EMYLSI+MDR++QGP++VASP GGTSIEDVAA+NPE IFT+ +DI  GL +E A  +A  +GLEPG+  HA    L+K LY M IA D T VE+NPLAET  G IV  DAK+NFDDNAE+RQ  IFA+RD TQEDPREV A +YDLNYIGL GNIGCMVNGAGLAM+TMDII+LKGG PANFLDVGGGASE QV KAFEILNADPKVK ILVNIFGGIMRCDVIA GIL+A K+IG+ KPIVIRLQGTNV++A+ LI+ S +RMI+ D+L  AA KAV +A IV QAE +++DV
Sbjct:   19 RHLNVHEYVSMEIMQAHGIKTPNCSVASTPEEAEQIFLHKLNKPGTPLLDVVIKAQVLSGGRGLGHFKSGFKGGVHMVTKAGQARDFAKSMLGEELVTKQA-PNGIICNKVLLMERMYMRNEMYLSILMDRASQGPLMVASPRGGTSIEDVAATNPEVIFTQPIDITVGLTDEQAQRMAGNLGLEPGSEGHAQAVTLMKNLYNMFIACDCTQVEVNPLAETPSGDIVVCDAKVNFDDNAEFRQTGIFARRDTTQEDPREVAASEYDLNYIGLDGNIGCMVNGAGLAMSTMDIIQLKGGSPANFLDVGGGASEQQVQKAFEILNADPKVKAILVNIFGGIMRCDVIANGILNAVKEIGISKPIVIRLQGTNVDKAKTLIEGSPYRMILADDLEAAAEKAVGVAEIVAQAEKIEVDV 432

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BLAST of NO24G00360 vs. NCBI_GenBank
Match: XP_002286405.1 (precursor of synthetase [Thalassiosira pseudonana CCMP1335] >EED96046.1 precursor of synthetase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 535.8 bits (1379), Expect = 1.300e-148
Identity = 270/408 (66.18%), Postives = 330/408 (80.88%), Query Frame = 0

Query:   26 RMLNVHEYISMDIMKSYGINTPQGQVVSSVEEAEHVYANTLNKGDTVVKAMVLSGGRGLGTFRNGFKGGVHLATNLKDVKKMTEAMLGQKLVTKQSGPDGIICNKVLLVERLYMRREMYLSIMMDRSTQGPVIVASPVGGTSIEDVAASNPEKIFTEAVDIMEGLKEETALGIATKIGLEPGTATHAAGADLVKKLYKMMIATDATLVEINPLAETSDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMATMDIIKLKGGDPANFLDVGGGASEDQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVEEAQKLIQASGFRMIVEDELGEAATKAVAIANIVKQAEDVKI 434
            R LNVHEYISM+IM  +GI TP+  V +S EEAEH++   +NK   V+KA VLSGGRGLGTF+NGFKGGVH+ T      +M  +MLGQ+LVTKQ+ P+GI+C KVLL+ER+YMR EMYLSI+MDR++ GP++V SP GGTSIEDVA SNPE IFTE +DI  GL  E A  +A  IGLE GT +HA    L+  LY M +  D T VE+NPLAET +G +V  DAK+NFDDNAE+RQK IF +RD++QEDPREVEA KYDLNYIGL GNIGCMVNGAGLAM+TMDII+LKGG PANFLDVGGGA+E QV KAFE+LN+D KV+ ILVNIFGGIMRCDVIA GI++AA++IG+KKP+VIRLQGTNV+ A+KLI+  GFRMI+ ++L +AA KAV +A IVKQA+++K+
Sbjct:    5 RNLNVHEYISMEIMNQHGIATPKNFVANSPEEAEHIFTTMMNK-HVVIKAQVLSGGRGLGTFKNGFKGGVHMVTRKGQAAEMASSMLGQELVTKQA-PNGILCQKVLLMERMYMRNEMYLSILMDRASGGPLLVGSPRGGTSIEDVAHSNPELIFTEPIDINVGLTVEAANRMARNIGLEEGTESHAKAVTLINNLYDMFLGCDCTQVEVNPLAETPEGDVVVCDAKVNFDDNAEFRQKSIFERRDFSQEDPREVEASKYDLNYIGLDGNIGCMVNGAGLAMSTMDIIQLKGGSPANFLDVGGGANEKQVQKAFELLNSDDKVQAILVNIFGGIMRCDVIATGIINAAQEIGIKKPLVIRLQGTNVDAARKLIEGCGFRMILAEDLEDAAEKAVGVAEIVKQAQNIKV 410

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BLAST of NO24G00360 vs. NCBI_GenBank
Match: XP_002179303.1 (beta chain succinyl-coa synthetase synthetase [Phaeodactylum tricornutum CCAP 1055/1] >EEC49126.1 beta chain succinyl-coa synthetase synthetase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 533.1 bits (1372), Expect = 8.300e-148
Identity = 274/415 (66.02%), Postives = 333/415 (80.24%), Query Frame = 0

Query:   26 RMLNVHEYISMDIMKSYGINTPQGQVVSSVEEAEHVYANTLN-----KGDTVVKAMVLSGGRGLGTFRNGFKGGVHLATNLKDVKKMTEAMLGQKLVTKQSGPDGIICNKVLLVERLYMRREMYLSIMMDRSTQGPVIVASPVGGTSIEDVAASNPEKIFTEAVDIMEGLKEETALGIATKIGLEPGTATHAAGADLVKKLYKMMIATDATLVEINPLAETSDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMATMDIIKLKGGDPANFLDVGGGASEDQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVEEAQKLIQASGFRMIVEDELGEAATKAVAIANIVKQAEDVKIDV 436
            R LNVHEYISM+IMK++GI TP+  V S+ EEAE+++ N+LN     K D V+KA VLSGGRGLGTF+NGFKGGVH+ T     ++   AMLG +LVTKQ+ P+GI+CNKVLL+ER+YMRREMYLSI+MDR +QGP++VASP GGTSIEDVAA+NPE IFT+ +DI EGL  E A  +A+ +GLE G+  H     L++ LY M IA D T VE+NPLAET +G IV  DAK+NFDDNAE+RQ  IFA+RD +QED REV+A KYDLNYIGL G IGCMVNGAGLAM+TMDII+LKGG PANFLDVGGGA+E QV KAFEILN+D +VK ILVNIFGGIMRCDVIA GI++AAK+IG+ KPIVIRLQGTNV EA+ LI+  GFRMI+ ++L +AA KAV +A I  QAE +++ V
Sbjct:   23 RNLNVHEYISMEIMKNHGIQTPECYVASNPEEAENIFLNSLNRPGAPKKDIVIKAQVLSGGRGLGTFKNGFKGGVHMVTKPGQAREFAAAMLGNELVTKQA-PNGIVCNKVLLMERMYMRREMYLSILMDRGSQGPLLVASPRGGTSIEDVAATNPEVIFTQPIDITEGLTPEGAHRMASNLGLEEGSTGHDKAVILMQNLYSMFIACDCTQVEVNPLAETPEGDIVVCDAKVNFDDNAEFRQSSIFARRDTSQEDVREVDASKYDLNYIGLEGTIGCMVNGAGLAMSTMDIIQLKGGSPANFLDVGGGANETQVQKAFEILNSDSQVKAILVNIFGGIMRCDVIATGIINAAKEIGINKPIVIRLQGTNVNEAKTLIEGCGFRMILAEDLEDAAEKAVGVAEIAAQAEKIQVGV 436

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BLAST of NO24G00360 vs. NCBI_GenBank
Match: OQR91248.1 (succinyl-CoA ligase beta-chain, mitochondrial precursor [Achlya hypogyna])

HSP 1 Score: 528.9 bits (1361), Expect = 1.600e-146
Identity = 278/423 (65.72%), Postives = 329/423 (77.78%), Query Frame = 0

Query:   22 GQQARMLNVHEYISMDIMKSYGINTPQGQVVSSVEEAEHVYANTLNKG----DTVVKAMVLSGGRGLGTFRNGFKGGVHLATNLKDVKKMTEAMLGQKLVTKQSGPDGIICNKVLLVERLYMRREMYLSIMMDRSTQGPVIVASPVGGTSIEDVAASNPEKIFTEAVDIMEGLKEETALGIATKIGLEPGTATHAAGADLVKKLYKMMIATDATLVEINPLAETSDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMATMDIIKLKGGDPANFLDVGGGASEDQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVEEAQKLIQASGFRMIVEDELGEAATKAVAIANIVKQAEDVKIDVTVNDP 441
            GQQ R LN+HEY SM+IMKS+G+  P         EAE  Y NTL  G    D V+KA  L+GGRGLG F+NGFKGGVH+ T  +D K   E M+G+ LVTKQ+G  GI   KV L+ER+YMRREMY SI+MDR++QGPV+VASP GGTSIEDVA + PE IF EAVDI +G   E    +AT +GL     +H  G +L+  LYKM I TDATLVEINPLAET +G++ A DAK+NFDDNA +R K+IFAKRD TQEDPREVEA  YDLNYIGL GNIGC+VNGAGLAMATMDII L GG PANFLDVGGGA+E QV KAFEILNADP+VK+ILVNIFGGIMRCDVIAAG+++AAK +GMKKPIVIRLQGTNVE+A++LI+ SGFRMIV ++L +AA KAV IA+IV QAE+V ++V+   P
Sbjct:   18 GQQVRRLNLHEYQSMEIMKSFGVAVPASLXXXXXXEAEAAY-NTLKGGHAGKDVVIKAQALTGGRGLGHFKNGFKGGVHMCTKPEDAKNFAEKMIGETLVTKQTGEKGIEVAKVFLMERVYMRREMYFSILMDRASQGPVLVASPAGGTSIEDVAHATPELIFKEAVDITKGPTNEQLSRLATSMGL--SGESHTRGVELMNNLYKMFIGTDATLVEINPLAETPEGQVFACDAKINFDDNASFRHKEIFAKRDKTQEDPREVEASAYDLNYIGLDGNIGCLVNGAGLAMATMDIISLFGGSPANFLDVGGGATESQVKKAFEILNADPQVKSILVNIFGGIMRCDVIAAGVIAAAKDLGMKKPIVIRLQGTNVEKARQLIENSGFRMIVANDLDDAAQKAVKIADIVAQAEEVHVNVSFELP 437

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BLAST of NO24G00360 vs. NCBI_GenBank
Match: CBJ26646.1 (beta chain succinyl-coa synthetase synthetase [Ectocarpus siliculosus])

HSP 1 Score: 527.7 bits (1358), Expect = 3.500e-146
Identity = 276/423 (65.25%), Postives = 323/423 (76.36%), Query Frame = 0

Query:   22 GQQARMLNVHEYISMDIMKSYGINTPQGQVVSSVEEAEHVYANTLNKG---DTVVKAMVLSGGRGLGTFRNGFKGGVHLATNLKDVKKMTEAMLGQKLVTKQSGPDGIICNKVLLVERLYMRREMYLSIMMDRSTQGPVIVASPVGGTSIEDVAASNPEKIFTEAVDIMEGLKEETALGIATKIGLEPGTATHAAGADLVKKLYKMMIATDATLVEINPLAETSDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMATMDIIKLKGGDPANFLDVGGGASEDQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVEEAQKLIQASGFRMIVEDELGEAATKAVAIANIVKQAEDVKIDVTVNDPS 442
            GQQ R LNVHEY+SM IM  + I+ P  ++  + E+AE   A  +      D V+KA VLSGGRG G F NGF+ GVH+     D K     MLGQKL+TKQ+G DG+ C+KVLL+ER+YMRREMYLSIMMDR +QGPVIVA P GGTSIED+A SNPE I  E VDIM GL +  A  IA  + L     ++ AG  L+K +Y M I  D TLVEINPLAET +GR++A DAKLNFDDNAE+RQK  F  RDYTQED REVEA KYDLNYIGL+GNIGCMVNGAGLAM+TMDIIKLKGGDPANFLDVGGGA+E+QV KAFE+LNADPKV TILVNIFGGIMRCDVIA+G+++AAK IGMKKPIVIRLQGTNVE+A +LI  SGF+MI+ ++L +AA KAVA+A I  QA  V IDV +   S
Sbjct:   40 GQQVRRLNVHEYVSMQIMAEHDIDIPASKMAETPEDAEKACAEIMGGNAMKDVVIKAQVLSGGRGRGHFDNGFESGVHMCLKPSDAKHYASEMLGQKLITKQTGEDGLPCDKVLLMERMYMRREMYLSIMMDRGSQGPVIVACPDGGTSIEDLAESNPELIMKEEVDIMTGLTDAQAGKIAEHLKLSSDGPSYEAGKTLLKNMYAMFIERDCTLVEINPLAETPEGRVMACDAKLNFDDNAEWRQKDTFQFRDYTQEDTREVEAAKYDLNYIGLTGNIGCMVNGAGLAMSTMDIIKLKGGDPANFLDVGGGATEEQVQKAFELLNADPKVATILVNIFGGIMRCDVIASGVINAAKSIGMKKPIVIRLQGTNVEQANELIANSGFKMIISNDLDDAAEKAVAVAEIYSQATKVGIDVELQTAS 462

[Close]

BLAST of NO24G00360 vs. NCBI_GenBank
Match: OQR89856.1 (succinyl-CoA ligase beta-chain, mitochondrial precursor [Thraustotheca clavata])

HSP 1 Score: 526.2 bits (1354), Expect = 1.000e-145
Identity = 280/433 (64.67%), Postives = 331/433 (76.44%), Query Frame = 0

Query:   12 AGANKKALVRGQQARMLNVHEYISMDIMKSYGINTPQGQVVSSVEEAEHVYANTLNKG----DTVVKAMVLSGGRGLGTFRNGFKGGVHLATNLKDVKKMTEAMLGQKLVTKQSGPDGIICNKVLLVERLYMRREMYLSIMMDRSTQGPVIVASPVGGTSIEDVAASNPEKIFTEAVDIMEGLKEETALGIATKIGLEPGTATHAAGADLVKKLYKMMIATDATLVEINPLAETSDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMATMDIIKLKGGDPANFLDVGGGASEDQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVEEAQKLIQASGFRMIVEDELGEAATKAVAIANIVKQAEDVKIDVTVNDP 441
            A A+    V G Q R LN+HEY SM+IMKS+G+  P     S+  EAE  Y NTL  G    D V+KA  L+GGRGLG F+NGFKGGVH+ T  +D K   E M+G+ LVTKQ+G  GI   KV L+ER+YMRREMY SI+MDR++QGPV+VASP GGTSIEDVA + PE IFTE VDI  G   E    +AT +GL     +H  G +L+  LYKM I TDATLVEINPLAET +G + A DAK+NFDDNA +R K IFAKRD TQEDPREVEA +YDLNYIGL GNIGC+VNGAGLAMATMDII L GG PANFLDVGGGA+E QV KAFEILNAD +VK+ILVNIFGGIMRCDVIAAG+++AAK +GMKKPIVIRLQGTNVE+A++LI+ SGFRMIV ++L +AA KAV IA+IV QAE+V ++V+   P
Sbjct:    6 AKASSLLRVPGHQVRRLNLHEYQSMEIMKSFGVAVPSSLPASTPAEAEAAY-NTLKGGNHAKDVVIKAQALTGGRGLGHFKNGFKGGVHMCTKPEDAKNFAEKMIGETLVTKQTGEKGIEVAKVFLMERVYMRREMYFSILMDRASQGPVLVASPAGGTSIEDVAHATPELIFTEPVDITTGPTNEQLARLATNMGL--SGESHVRGVELMGNLYKMFIGTDATLVEINPLAETPEGHVFACDAKINFDDNAAFRHKDIFAKRDKTQEDPREVEASQYDLNYIGLDGNIGCLVNGAGLAMATMDIISLFGGSPANFLDVGGGATESQVKKAFEILNADTQVKSILVNIFGGIMRCDVIAAGVIAAAKDLGMKKPIVIRLQGTNVEKARQLIENSGFRMIVANDLDDAAQKAVKIADIVSQAEEVHVNVSFELP 435

[Close]

BLAST of NO24G00360 vs. NCBI_GenBank
Match: XP_008618375.1 (succinyl-CoA synthetase beta subunit [Saprolegnia diclina VS20] >EQC28226.1 succinyl-CoA synthetase beta subunit [Saprolegnia diclina VS20])

HSP 1 Score: 516.5 bits (1329), Expect = 8.000e-143
Identity = 274/423 (64.78%), Postives = 324/423 (76.60%), Query Frame = 0

Query:   22 GQQARMLNVHEYISMDIMKSYGINTPQGQVVSSVEEAEHVYANTLNKG----DTVVKAMVLSGGRGLGTFRNGFKGGVHLATNLKDVKKMTEAMLGQKLVTKQSGPDGIICNKVLLVERLYMRREMYLSIMMDRSTQGPVIVASPVGGTSIEDVAASNPEKIFTEAVDIMEGLKEETALGIATKIGLEPGTATHAAGADLVKKLYKMMIATDATLVEINPLAETSDGRIVAADAKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMVNGAGLAMATMDIIKLKGGDPANFLDVGGGASEDQVHKAFEILNADPKVKTILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVEEAQKLIQASGFRMIVEDELGEAATKAVAIANIVKQAEDVKIDVTVNDP 441
            GQQ R LN+HEY SM+IMKS+G+  P     ++  EAE  Y NTL  G    D V+KA  L+GGRGLG F+NGFKGGVH+ T  +D K   E MLG+ LVTKQ+G  GI   KV L+ER+YMRREMY SI+MDR++ GPV+VASP GGTSIEDVA + PE IF EAV+I  G   E    +A  +GL     +   G +L+  LY M I TDATLVEINPLAET +G + A DAK+NFDDNA +R K IFAKRD TQEDPREVEA  YDLNYIGL GNIGC+VNGAGLAMATMDII L GG PANFLDVGGGA+E QV KAFEILNADP+VK+ILVNIFGGIMRCDVIAAG+++AAK +GMKKPIVIRLQGTNVE+A++LI+ SGFRMIV ++L +AA KAV IA+IV QAE+V ++V+   P
Sbjct:   18 GQQVRRLNLHEYQSMEIMKSFGVAIPASLHATTPAEAEAAY-NTLKGGDAAKDVVIKAQALTGGRGLGHFKNGFKGGVHMCTKPEDAKNFAEKMLGETLVTKQTGEKGIEVAKVFLMERVYMRREMYFSILMDRASNGPVLVASPAGGTSIEDVAHATPELIFKEAVNITTGPTSEQLNRLAANMGL--SGESQKRGVELMNNLYNMFIGTDATLVEINPLAETPEGHVYACDAKINFDDNASFRHKDIFAKRDKTQEDPREVEASAYDLNYIGLDGNIGCLVNGAGLAMATMDIISLFGGSPANFLDVGGGATESQVKKAFEILNADPQVKSILVNIFGGIMRCDVIAAGVIAAAKDLGMKKPIVIRLQGTNVEKARQLIENSGFRMIVANDLDDAAQKAVKIADIVAQAEEVHVNVSFELP 437

The following BLAST results are available for this feature:

BLAST of NO24G00360 vs. NCBI_GenBank

BLAST of NO24G00360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM24301.1	2.700e-223	90.34	succinate- ligase [Nannochloropsis gaditana]	[more]
EWM24300.1	3.000e-214	90.63	succinate- ligase [Nannochloropsis gaditana]	[more]
GAX22577.1	2.600e-149	66.75	succinyl-CoA synthetase beta subunit [Fistulifera ...	[more]
GAX10691.1	3.400e-149	66.75	succinyl-CoA synthetase beta subunit [Fistulifera ...	[more]
XP_002286405.1	1.300e-148	66.18	precursor of synthetase [Thalassiosira pseudonana ...	[more]
XP_002179303.1	8.300e-148	66.02	beta chain succinyl-coa synthetase synthetase [Pha...	[more]
OQR91248.1	1.600e-146	65.72	succinyl-CoA ligase beta-chain, mitochondrial prec...	[more]
CBJ26646.1	3.500e-146	65.25	beta chain succinyl-coa synthetase synthetase [Ect...	[more]
OQR89856.1	1.000e-145	64.67	succinyl-CoA ligase beta-chain, mitochondrial prec...	[more]
XP_008618375.1	8.000e-143	64.78	succinyl-CoA synthetase beta subunit [Saprolegnia ...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL039	nonsL039	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR030	ncniR030	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR026	ngnoR026	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK002874	NSK002874	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO24G00360.1	NO24G00360.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|545035	gene_7263	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100047g7	gene6149	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO24G00360.1	NO24G00360.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO24G00360 ID=NO24G00360|Name=NO24G00360|organism=Nannochloropsis oceanica|type=gene|length=3235bp
ACAGGTGGTCACTTCCATTGCCATTCTCCTGCTGCTCCTGTATCTGCAAA
CGATCAACCTTTGATCCTCTCAAAGACCTGAAATCAGCGCTTCCCCGTCA
TCGTCGTTCATCATGTTCCGCGCAGTGCTCAACAAAGTCCGCCTCGCTGG
AGCCAACAAGAAGgtaagtgtcatctgaaagagatttggatggagactag
caggaatgagggcgatgagtctcgcgagtggtgtgtcctggtcttgtttg
tcctgtcacacactcccgactctctcgtccctcccctccccctccctatc
tcaccgttgggcaccctccctgctatactaccacagGCCTTGGTCCGTGG
GCAGCAAGCTCGCATGCTTAATGTGCACGAATACATCAGTATGGATATCA
TGAAGAGTTATGGCATTAACACGCCTCAGgtatgtctgctttttgctgct
ttcccagtggggggggggagactggggaagcgagcaggaggtcttcggat
ggaaaaaggatattcggccatggacaagatgacgcatgtttgggagttag
atgattgtagtggagggtagcttcgtggatcatgacatctgtaatcatcg
tccttaaaacgaccgaaaggaaagcaatagagcgagtgattatcttcctt
tgcctcctcaccctccccctccctccctccctccctccctccttccctcc
ctccctccctccttccttccttccctccctccctcctcttccttagGGCC
AAGTCGTCTCCTCCGTCGAGGAAGCCGAGCACGTGTATGCTAACACTCTC
AACAAGGGCGATACTGTAGTCAAGGCCATGGTCCTGTCGGGCGGGCGTGG
GTTAGGCACGTTTAGGAACGGCTTCAAGGGCGGAGTGCACCTGGCCACGA
ATCTGAAGGATGTGAAAAAGATGACAGAGGCGATGCTGGGACAGAAGCTG
GTCACAAAGCAGTCAGGGCCTGATGGTATCATCTGTAACAAGgtgagggc
gagccctccctccctccctccctccctcccttcctccctccctttcttcc
ttatttgtgtgtgtccgtgcaggaggagtgtccctggagggtaggcgtct
gggattatgtgtatgtgggggtgtggattggagtgtgagtggattggagt
gtgttggggtgggtggaggtgacaccgaaaatcggagacgcacaagacag
aagcaaagcacgcattcactccaccctccctccttcccctccaccttccc
tcctcagGTGTTGCTCGTCGAGCGGCTTTATATGCGACGGGAGATGTATC
TGTCCATTATGATGGATAGAAGTACTCAAGGCCCTGTGATTGTGGCCTCT
CCCGTGGGCGGGACGAGCATCGAGGACGTGGCTGCGTCGAACCCCGAGAA
GATTTTCACGGAGGCCGTGGACATTATGGAGGGGCTGAAGGAGGAAACAG
CCCTCGGTATTGCGACCAAGATTGgtaggttactcctctcttctttcctc
ccctcccttcccccttacttgccagtgaatctcatctcaccctccctccc
tccctccctccctccctccctccctccctccctcattcccaacatcccag
GCCTCGAGCCCGGCACTGCCACCCACGCCGCCGGGGCCGACCTGGTGAAG
AAGCTGTACAAGATGATGATCGCCACCGACGCTACCCTCGTGGAAATCAA
CCCCCTGGCCGAAACGAGCGATGGGAGGATTGTGGCAGCTGACGCCAAGT
TGAACTTTGATGATAATGCGGAGTACAGGCAGAAGCAGATTTTTGCCAAG
CGGGATTACACGCAGGAGGACCCGCGGGAAGTGGAGgtaggtttgtaagg
tcgttttgctgtcttccctccctcccttccttcctccctccctccctccc
tcccttcctcccttcctttcttcctctcggcgtgttgggtgatttcgctg
tcttccctccctccctccctccctccctccctccctccctccctccctcc
cttccttccttcctttcttcctctcagaaagttaatcgtgtttgatttcg
gggattgggggatcctggtgctcattacttcacttgtttaattacacaaa
tctaatcatttcagttacattaacctcaccacttgattatcaatcgaatc
atttacatcacattgaccttaccacttgattaaatcacaaacatagGCGC
ACAAATACGACCTGAACTACATCGGTTTGAGCGGGAACATCGGCTGTATG
GTGAACGGCGCTGGCCTTGCCATGGCCACTATGGACATAATTAAGCTCAA
GGGGGGAGACCCGGCGAACTTCTTGGACGTGGGAGGAGGCGCGAGTGAGG
ATCAGGTCCACAAGGCGTTTGAAATTTTAAATGCGGACCCTAAGgtcgga
gaaagagggagggagggagggagggaggggagatggatggggttgggaag
gcctcgacgtcctcttctacgcggccaaacaagtcatcacccactcatcc
tccctccctccctccctccctccctccctcccagGTCAAGACCATCCTAG
TGAACATTTTTGGGGGCATCATGCGCTGCGACGTCATCGCGGCCGGCATC
CTCTCGGCGGCGAAACAGATCGGGATGAAAAAGCCCATCGTCATCCGCCT
CCAAGGCACTAACGTAGAGGAAGCCCAAAAACTAATTCAAGCGTCGGGGT
TCCGGATGATCGTCGAGGACGAGTTGGGGGAGGCCGCCACAAAGGCGGTG
GCTATTGCCAATATTGTGAAACAGGCTGgtgagttggaatctgccttgca
tccctaccctccttccctccctccctccctcatgccctgactccactcat
ctctccgtccattcgtcccgctctccctccctccttggtgtccttcatct
gtttgtctctgttgccactaccgctttttcctccatccctttttttaatt
ccctccctccctccctccctccctcatgccctgactccactcatctctcc
gtccattcgtcccgctctccctccctccttggtgtccttcatctgtttgt
ctctgttgccactaccgctttttcctccatccctttttttaattccctcc
ctccctccctccctccctctcgcccttcttcgcagAGGATGTGAAAATCG
ACGTGACTGTCAACGACCCCAGTTTCCTGCCCCTCTAGGGGAGGGAGGGA
GGAAGGGTGGGAAGGGAGGGAGGAAGGGTGGGAAG

protein sequence of NO24G00360.1

>NO24G00360.1-protein ID=NO24G00360.1-protein|Name=NO24G00360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MFRAVLNKVRLAGANKKALVRGQQARMLNVHEYISMDIMKSYGINTPQGQ
VVSSVEEAEHVYANTLNKGDTVVKAMVLSGGRGLGTFRNGFKGGVHLATN
LKDVKKMTEAMLGQKLVTKQSGPDGIICNKVLLVERLYMRREMYLSIMMD
RSTQGPVIVASPVGGTSIEDVAASNPEKIFTEAVDIMEGLKEETALGIAT
KIGLEPGTATHAAGADLVKKLYKMMIATDATLVEINPLAETSDGRIVAAD
AKLNFDDNAEYRQKQIFAKRDYTQEDPREVEAHKYDLNYIGLSGNIGCMV
NGAGLAMATMDIIKLKGGDPANFLDVGGGASEDQVHKAFEILNADPKVKT
ILVNIFGGIMRCDVIAAGILSAAKQIGMKKPIVIRLQGTNVEEAQKLIQA
SGFRMIVEDELGEAATKAVAIANIVKQAEDVKIDVTVNDPSFLPL*

Synonyms

Publications