NO24G00330, NO24G00330 (gene) Nannochloropsis oceanica

Overview
NameNO24G00330
Unique NameNO24G00330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2114
Alignment locationchr24:115393..117506 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:115393..117506 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO24G00330 vs. NCBI_GenBank
Match: EWM20434.1 (hypothetical protein Naga_101618g1 [Nannochloropsis gaditana])

HSP 1 Score: 95.1 bits (235), Expect = 4.200e-16
Identity = 45/80 (56.25%), Postives = 61/80 (76.25%), Query Frame = 0 
Query:   13 NSTPLLLVLLLVLHLLLPSAHAEDPLINVYMRGSSSRVPANFPSALHFVAEIPSWSTGEISSAVLSETGLADLRKQCGDD 93
            +S+ +  + +L+    + +A A+DPLIN+YMRGS  RVP NFP ALHFV +IP+WSTGE+  AVLS+TGL DL++QCG D
Sbjct:   27 SSSSIFPIRVLLASYFVLAALADDPLINMYMRGSGDRVPGNFPYALHFVPDIPAWSTGELWFAVLSDTGLHDLQRQCGQD 106
The following BLAST results are available for this feature:
BLAST of NO24G00330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20434.14.200e-1656.25hypothetical protein Naga_101618g1 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR114ngnoR114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00330.1NO24G00330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672607gene_7259Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101618g1gene9974Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00330.1NO24G00330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00330 ID=NO24G00330|Name=NO24G00330|organism=Nannochloropsis oceanica|type=gene|length=2114bp
ATGATCCTAAGAGGCCTCGGCGTGGACGGCCGCGGGAACTCAACCCCTCT
CCTCCTCGTCCTCCTCCTTGTCCTCCATCTCCTCCTACCCTCTGCGCATG
CCGAAGACCCACTCATCAATGTCTACATGCGTGGGAGCAGCAGTAGGgta
cgtttgactgctcaggaaggatggaagggggcaagagaaggagggcgggt
gtggaaggacggttggacgagatgaaagaggactgagggaaaggcccgca
cgtcctgttggtaccacaactaacgctcatttcccaacagtgttaagatc
tgtctcctggtcatatgtaccctcaatacctttctcgatattttccttct
atacttttcttcaaatttaccctccatactttccttcatatttaccgccc
acactttccctccccctccttctcaatgttcccggcctccaaacctctgt
ggcccctttctcatctcctctcctcccctcccctgccctctctccctcct
ccccagGTCCCCGCGAACTTTCCTTCTGCCCTTCACTTCGTTGCCGAGAT
TCCTTCTTGGTCTACGGGGGAAATCTCTTCGGCTGTCCTCAGCGAAACTG
gtgagcaagcgaaaaggagggagggcgggagggcgggagggcgggaggga
gggaaggagggagggaaggagggagggcgggagggcgggagggagtgaag
gagggagggagggaatgctggaagaaaacaagccctgcaaaggaccaaga
aaggaagaagggagggagagagggatggaaagagggatgggaagtgatgg
agaccggaatgagtttgtcggcgcccttgtcacacttttcattcccgccc
tccctccttatagGCTTGGCCGACCTTCGGAAGCAATGCGGCGACGACGT
TGGCCTTAGGGAGGAGGACCGCATCCCCTTCTCCACCACATTCAGTGGCG
TGACGCGCATCAAATACGgtacctccctccctccctccctttctcccccc
tctctccctccctttcctcagcaggggaatggatggccctgaccccgtcg
aaggcaatttattcacccatatatttatatatataattaatggcacatta
ctatatattttcccgtgtgcaggctccgacacctccacatgccatttgct
gatccctccctctctctctccctccctccctcctccctccctctcttcct
ccctccctggccccagGCTGCCTCAAGGGGTTTTTGGCCTACAACCAACG
TTACAAGAAACACGAAGTCCTCCCATTCATGGACACCAAGCAAGTAACGG
CCGCCAACGAAAACGAGCACGTTTCTTTCGAAATGAAAGCCGGTCCCAAC
GGCATCGACgtacgtgcccttcctacctctttccctccctttctccatga
caccatcttatcttccctttcctccttcttcctccctctctcccttcctc
cctgcctccctccctccctccctcctcagGGCTCCTGGTGGCTTCTCCCC
TGGACCGGCAACGCACCCATCGTCCTCAGAGACCTTCAAAGCTGCTTCCC
CTCCCCACAGCAGCAATGGTGCACAGAGCCCCAGGATATCAAGCTCGgtg
cgccttccctccctccctccccccttcttgccctttggtttgtgcctgcc
ttgccccctcttcttcttctcctcgttctccacctttttaccttccctct
ctcgctccctccctctccttccttcccctctcttcctccctagCCCCCAT
GGGTCTCACCGCCGCTGACGTGGTGGAATGGAATCCCATCGTCCTCCCTC
CTTCTTCTTCTCCTCCTCCTCCTCCTTCGCCGCCTTCCCTAGGCGCACCG
TTCCAAGGACCGGGGGGATCTGGGCAATCCGGAGCCCCTCAAATAGGAGA
AGAGTCGCAAGCAGTAGCACCGGCAGCTCCGGCAGCTCCGGCAGCACCGG
CAGCACCTACAGCACCAACGGCACCAACAGCACCAGCACCAGCACCAGCA
CCAGCCGCACGAGACGCAGTAAGACAAACACCTCTACCAGCAGCTGCAGC
AGCACCGCCACAGTTGTTGCAACTGCGGGGAAACGCTAGAACAGCCTCAG
GGAATGATGTATAA
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protein sequence of NO24G00330.1

>NO24G00330.1-protein ID=NO24G00330.1-protein|Name=NO24G00330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MILRGLGVDGRGNSTPLLLVLLLVLHLLLPSAHAEDPLINVYMRGSSSRV
PANFPSALHFVAEIPSWSTGEISSAVLSETGLADLRKQCGDDVGLREEDR
IPFSTTFSGVTRIKYGCLKGFLAYNQRYKKHEVLPFMDTKQVTAANENEH
VSFEMKAGPNGIDGSWWLLPWTGNAPIVLRDLQSCFPSPQQQWCTEPQDI
KLAPMGLTAADVVEWNPIVLPPSSSPPPPPSPPSLGAPFQGPGGSGQSGA
PQIGEESQAVAPAAPAAPAAPAAPTAPTAPTAPAPAPAPAARDAVRQTPL
PAAAAAPPQLLQLRGNARTASGNDV*
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Synonyms
Publications