NO24G00310, NO24G00310 (gene) Nannochloropsis oceanica

Overview
NameNO24G00310
Unique NameNO24G00310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4217
Alignment locationchr24:104892..109108 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:104892..109108 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
The following BLAST results are available for this feature:
BLAST of NO24G00310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR114ngnoR114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00310.1NO24G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|128695gene_7254Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00310.1NO24G00310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00310 ID=NO24G00310|Name=NO24G00310|organism=Nannochloropsis oceanica|type=gene|length=4217bp
TCCATGCTCCTGTTGATCCATTGTTGTTGGTTTTTCACACTTTGTATCAT
ACAATTTCCATCACGCGACAACTATAAGTCGTTTAGCCGTTCATGATTTT
CACCTGGCGACGACTGCAAGCTACTGAAGCTTTGCATGTATTGCTATTTC
ATCAATCGACGACTGTGATAGACTTATGCCTGTAGCAGCAGTCGTCCTGT
GTCGTATCTTTCGCGAGCAAAGACTAGGTCCCCGAGTCGTCCAATTGTTT
TCATCGACCCACGACTACACATTAGTCACAACTGTGATGACTCATGAATA
AAATGAATCGCTGTCGCTGTCAAAGAAACTCCACGCTGGACGACAGTTCT
GCGAAATAGCCTGTACGACTCAGTGGCTATTATGATAGTTGTCATTGGTC
GTCTAGAAATTTCCCCTTTCATGACGACAAAATGCCGGTAACTAACTAAG
TTACTGAGATGGTTGAACCATCTCTGGCTACCGGGGTTTTCGGCGTTGTG
TCTGCGTGGGTTGGCGCCCGGACCATTTTTTTTTATCCCGGTTGACCCGG
GAGTGGTCGTAAGGCGACCCGCGGCGACGGGGTGGAGGTGTGTGGGGTTT
GGGTGCCAGGACCCCTCCACAATGGAGGGGTTCGAAGGGGGGGCTACGGC
ATCGCCTCGAGGGATTTCCTAGCCGAATATTTTCTGGGGCAAAATAGTTT
TTACTGCGCGGTGTTGGTCGAAATAAAGTAATGAAACAAGAAGTATAGAT
TGCGTCAATGGTTACCGATAATATGGTATCAGAGACCTTTAAGCATTGAG
ATTCGAAAGGGGGACCTCTCTGATCATCATTATTTGGTGACTTCAATATC
TCAACCGGAACGCTCAAAATAGTTTTCTTTTCTTCTTTTTTCTTTTTCTT
TTCCTCTTTCTGCCTCGTCTACAGCATTTTGTGTACTTAGTCAGCCAGGC
TGCCAATCTAGACCCGGGGGGTCATCCTTTATTCGAGTCTAGTCCCTGGG
TATGCCCAAGACGGGCTGGTGCCCACCCTGACGGTTGTCAACCGAAGTGA
GCTGAGCTAAAAACTGCCACGAAGAGGAGCTTCTACTCGACCTGTGTCAT
CAGGCAATTGCTCGCAACCTATCTGGTAACAAACTTACAAATGCATTATT
CATGTGCGCTTTCATTCCCTATCCCAATCCACTGAGTACTTTATGAAGTG
AAAAATCGACGCTTCGGATATGGGCGCGCATAGGAGCTGGAAGACGCAAG
GGGGAACGATGCCGAAGCCACAGGCTCTTAGAGCTGAAACTTCTACCTGG
CATAGCATTGCTTGGGCCCCTTTTCGAGTGCCAGAGTCTAGTCATCCTCT
ATACACATATATAATCTATCCTATTTCTCCCTGCATTGCCTTAGGCTCAC
AGAGTTCGTCCAAGGGCTCCCCCGATACTCCTCGGAGATATTATATAACC
CTCCAAACAACGAGGGCGCTGCGATGTATGGAGCCTCATGGCCACAACCC
CGTCTCCTTGCTGCACCCCCGTGCTACACATCCTCAAGAGTGCCCGCGTA
ATGATAGCCTCTTCTCGCCTCGCCCCACTCGTGCTCCAACATTAACTCTG
TCATCGATCCCTGCTGATTCCCTCGGTCTTTCTCCTCCAACGAGCAGCAT
GCCCTACACCCGCAGCAGCCAGAATGTTAGCTCGCCAGCCCCTACAAATA
TCAGGTACAGAAGCCATCCTCAACGAGCCTTGGCATGCTTGCATTGCCGG
AGATCCAAAGTAAAGTGCGACAAGAAACAGCCGACTTGTACTCGgtaagt
acccaccagagcgggatggcgtcatcgtcccgcgaaaacaccagtggcct
gatgccggcagccaccccgtcatgcggggcgggcttattttcgtgctcaa
aatatgatagaaggagatgtctttatgccggtgacaaggctggttatgat
taagacctcaaaaaagtaaaaagagcaaaaaacttacataactttctgta
tagtccgtaccagaggctcgactggtcctcgagtcgacgtcagcgtgcga
gactgcggtttcgtatgccacaggcctccatgacgtttctcgtcttatac
cctcaacatacgacagATGCATCCGCCTGGGCGTAACCTGTGAGCCGCAA
AAACGAGGGCGAACGACGGCACCTTTTCGATCCTTGGCATCAGCAATCGC
CAACTTCCCGCAATCCTCATTTTCCTATCATTCCTATCACAATCCCTCAT
TGCCCGGCTTGCTGCACTCTGATCCGCCCTCCCGAGCCCGCTCAACCTTC
AACCAGGCCCTGCGTGGGCACCAGCACCCGCAGAGCCACTCGCAGAGCCT
AGAGCCCAGAGTATTTACCGgtaagtacctcgcctcatttctctgtccat
tgctgagcgcgctcgccgcacatgaccagcgatgtgcccactttgctgat
cagtgagtggctgagttctgtatctgttaaaaaaaagtagggcttttgat
gttgtactgtatatgaatcgcgaagtctgcactgtccgacatgggcgatt
cgtatcttgatgtcactatgccggtgacaaggctcgtaatggtgattaaa
accccaaaaaagtaaaaagagcaaaaagttacataactttctgtatagtc
cgcaacccccttgaggcatgggctctggttcaactcctgtccccacgaca
acaaggccagttcccatggatccatacacagacctacagtacatgcctcg
gcccttgcgtgtgccattatgaccttgtcaggcggcattctcgatgtggg
cctcggatacggcaatttctcaaatggtagtttcctttctctcccccaca
caccacacagCACACGCAAAACCAGCACGGCATCCGCGGCATGAGGCAGC
AACTGACCCTTGTCGTCAGCAGCTACCGCGgtaagccacagagatgttgg
tttaaggaaggggggagggctggcagccccgtccatatgggatgggtgtg
gatttgaggcttttcgtgcatgtcactcatcacctccctttccacatgct
cttcacacatgtgatcacacacatgcacacacacatatatatgtatacac
tatatgcagGTACAATCAACTTGCTTTGCCACCAGATGTAGCGCACACGC
TCTCTTCCTCTTCCTCTTCCTCTTCCTCCTTGCCATCGTTCTTGTCGTCC
TCCTCCTCCTCCTTGTCCTCCTCCTTCCCCTCGTCCTCGTTTCCTTCCTC
CACCTTGCCCTCCTCCTCCTCCTCCTTGTCTTCGTTCTCCGACCCGATGG
CTCCTGTCCACAAGCGTCTGGTTACGGACAGCTTCTTAGCCCCCTGCCCG
CCACCCTCAAGCGCATATCAGCAATATCAGCTGCAGCAGCTGTTACTCGC
CTCCCATCATCTCAAGCAGATACAGCAGCAGCAGCAGCAGCAGCAGCATC
AAAAGGTAGTGGAAGCGCTGGCCGTCATGCATAATGGTACACCCCTTTCC
CCCCGCCTTCTTCGTCCTCATGGACAAGAGCAACGACCACAACCACAACC
GTACCAAACGCAACCGCAACTCCGGTCTCAGGCACTAAACGCTCTTTGCT
CTACTACACTCGTTCCTCGCCCTTCGTTCTCCTCCACCTCTTCCTCCTCC
ACCGCTACATCCGCTGCCTTGCTATCTTTCCAGAACACCTCTACATGCAC
AGACCCAAACACAAAGACGACGACCACCACCACCACCAGCAGCAGTAGCA
GCAGCAGCAGTGCCAGCTCGTGCTTGGATCCTCTCTCCTTCAACCTTTCT
CCATCCCACCCTTTCTTTCCTCTATTCCCTTCACTCCACCTCTCTCACCA
TCCTGCAGGGTACGTCCGAGACCAGGCAACCCTCACGAAGACTACAACGA
CGACGTAAACACTTCATTTGCACCTTACGGGCGTTGTGTGAGGGTAAGAA
AAAGGAGGAATTTAAACCGCGGAGGGGTGTAATTTCGAAGGTCTTCAAAA
GGGGGGGCTAACGTGTCTACTGCTTCGACCACATCTCATGGAGGATACCT
TATAATTGCTTCGACTGAATGGTCTACCTCAACTTTAACATACATGGGAG
TAAATCCTACATTTTAGATAAACTGGTTACATAATTTTTAATGACCCAAA
AGAAGCAAAAGTATATTGGGGGGCTCTGCTTATAGAGGAGGGGAGGCGGG
GAGGGAGGACTTCTGGT
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protein sequence of NO24G00310.1

>NO24G00310.1-protein ID=NO24G00310.1-protein|Name=NO24G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=566bp
MGAHRSWKTQGGTMPKPQALRAETSTWHSIAWAPFRVPESSHPLYTYIIY
PISPCIALGSQSSSKGSPDTPRRYYITLQTTRALRCMEPHGHNPVSLLHP
RATHPQECPRNDSLFSPRPTRAPTLTLSSIPADSLGLSPPTSSMPYTRSS
QNVSSPAPTNIRYRSHPQRALACLHCRRSKVKCDKKQPTCTRCIRLGVTC
EPQKRGRTTAPFRSLASAIANFPQSSFSYHSYHNPSLPGLLHSDPPSRAR
STFNQALRGHQHPQSHSQSLEPRVFTAHAKPARHPRHEAATDPCRQQLPR
YNQLALPPDVAHTLSSSSSSSSSLPSFLSSSSSSLSSSFPSSSFPSSTLP
SSSSSLSSFSDPMAPVHKRLVTDSFLAPCPPPSSAYQQYQLQQLLLASHH
LKQIQQQQQQQQHQKVVEALAVMHNGTPLSPRLLRPHGQEQRPQPQPYQT
QPQLRSQALNALCSTTLVPRPSFSSTSSSSTATSAALLSFQNTSTCTDPN
TKTTTTTTTSSSSSSSSASSCLDPLSFNLSPSHPFFPLFPSLHLSHHPAG
YVRDQATLTKTTTTT*
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Synonyms
Publications