NO24G00230, NO24G00230 (gene) Nannochloropsis oceanica

Overview
NameNO24G00230
Unique NameNO24G00230
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length919
Alignment locationchr24:73438..74356 +

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Properties
Property NameValue
DescriptionDNA-dependent metalloprotease WSS1
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:73438..74356 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013536WLM
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
[Close]
BLAST of NO24G00230 vs. NCBI_GenBank
Match: CBJ29943.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 133.3 bits (334), Expect = 5.300e-28
Identity = 59/116 (50.86%), Postives = 85/116 (73.28%), Query Frame = 0 
Query:    9 IEVLKGKPREAEAKDIITRVAKQVEPLLIKYHWRVGLLAEFFPSNRGLLGMNMNKGHKILLRLRPACAPSTFINIESILGTMLHELVHMEIGPHSTHFYERLEGLTHECEAMMAEG 125
            I+ +KG+PR+AEA++++ ++A QV+P+ + + W+V LL EF P+N GLLG+N+N+G KI +RLRP     +F   E ILGTMLHELVH +IGPHS  FY  L+ L  EC+ ++ EG
Sbjct:   13 IKEVKGRPRQAEARELLQKLADQVKPICVAHKWKVVLLLEFIPNNPGLLGLNVNRGQKICIRLRPPSDEGSFYPYEFILGTMLHELVHNQIGPHSAKFYRMLDQLNDECDKLIREG 128
[Close]
BLAST of NO24G00230 vs. NCBI_GenBank
Match: OQR94088.1 (hypothetical protein ACHHYP_01856 [Achlya hypogyna])

HSP 1 Score: 132.9 bits (333), Expect = 7.000e-28
Identity = 63/121 (52.07%), Postives = 85/121 (70.25%), Query Frame = 0 
Query:    4 YKVEAIEVLKGKPREAEAKDIITRVAKQVEPLLIKYHWRVGLLAEFFPSNRGLLGMNMNKGHKILLRLRPACAPSTFINIESILGTMLHELVHMEIGPHSTHFYERLEGLTHECEAMMAEG 125
            +++  I+ LK +PR  EA++I+ R+   V P++ K  ++V  L EFFP +  LLGMN+N G KI +RLRPA  PSTF   E +LGTMLHELVHMEIGPH+T FY+ L+ L  E E +MA+G
Sbjct:    3 WRIPRIQALKQQPRHEEAQNILERIESYVLPIMAKRKYKVRQLLEFFPKDTNLLGMNVNHGWKIYVRLRPAARPSTFFPFEELLGTMLHELVHMEIGPHNTAFYKLLDELKSEMELLMAQG 123
[Close]
BLAST of NO24G00230 vs. NCBI_GenBank
Match: XP_012197251.1 (hypothetical protein SPRG_03281 [Saprolegnia parasitica CBS 223.65] >KDO32063.1 hypothetical protein SPRG_03281 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 130.6 bits (327), Expect = 3.500e-27
Identity = 62/121 (51.24%), Postives = 85/121 (70.25%), Query Frame = 0 
Query:    4 YKVEAIEVLKGKPREAEAKDIITRVAKQVEPLLIKYHWRVGLLAEFFPSNRGLLGMNMNKGHKILLRLRPACAPSTFINIESILGTMLHELVHMEIGPHSTHFYERLEGLTHECEAMMAEG 125
            +++  I  LK +P+  EA+ I+ R+A  V P++ K  +RV  L EFFP N  LLGMN+N G KI +RLRPA  P++F+  E +LGTMLHELVHM+IGPH+  FY+ L+ LT E E +MA+G
Sbjct:    3 WQIPTIRALKRQPQVDEAQRILERIASYVLPIMSKRQYRVQQLLEFFPKNANLLGMNVNHGWKIYVRLRPAARPTSFLPFEDLLGTMLHELVHMKIGPHNAAFYKLLDELTSEMETLMAQG 123
[Close]
BLAST of NO24G00230 vs. NCBI_GenBank
Match: XP_009838400.1 (hypothetical protein H257_12786 [Aphanomyces astaci] >ETV71957.1 hypothetical protein H257_12786 [Aphanomyces astaci])

HSP 1 Score: 128.6 bits (322), Expect = 1.300e-26
Identity = 62/121 (51.24%), Postives = 83/121 (68.60%), Query Frame = 0 
Query:    4 YKVEAIEVLKGKPREAEAKDIITRVAKQVEPLLIKYHWRVGLLAEFFPSNRGLLGMNMNKGHKILLRLRPACAPSTFINIESILGTMLHELVHMEIGPHSTHFYERLEGLTHECEAMMAEG 125
            + +  I+ LK + +  EA+ I+ R+A+ V P+  K  ++V  L EFFP N  LLGMN+N+G KI LRLRPA  P+TF+  E ILGTMLHELVHM+IGPH   FY+ L+ LT + E +MA G
Sbjct:    3 WTIPTIQALKKQTKNDEAQRILERIAEHVLPICTKRRFKVRNLLEFFPKNANLLGMNVNEGWKIFLRLRPASHPTTFLPFEEILGTMLHELVHMKIGPHDASFYKMLDELTEDMENLMARG 123
[Close]
BLAST of NO24G00230 vs. NCBI_GenBank
Match: XP_008876717.1 (hypothetical protein H310_11728 [Aphanomyces invadans] >ETV94772.1 hypothetical protein H310_11728 [Aphanomyces invadans])

HSP 1 Score: 128.3 bits (321), Expect = 1.700e-26
Identity = 62/121 (51.24%), Postives = 84/121 (69.42%), Query Frame = 0 
Query:    4 YKVEAIEVLKGKPREAEAKDIITRVAKQVEPLLIKYHWRVGLLAEFFPSNRGLLGMNMNKGHKILLRLRPACAPSTFINIESILGTMLHELVHMEIGPHSTHFYERLEGLTHECEAMMAEG 125
            + +  I+VLK + ++ EA+ I+ R+A  V P+  K  ++V  L EFFP N  LLGMN+N+G KI LRLRPA  P+TF+  E ILGTMLHELVHM+IGPH+  FY+ L+ LT E E ++  G
Sbjct:    7 WMIPTIQVLKRQSKKDEAQRILERIADHVLPICTKRQFKVRNLLEFFPKNGNLLGMNVNQGWKIFLRLRPASQPTTFLPFEDILGTMLHELVHMKIGPHNASFYKMLDELTREMENLLERG 127
[Close]
BLAST of NO24G00230 vs. NCBI_GenBank
Match: XP_008618421.1 (hypothetical protein SDRG_14093 [Saprolegnia diclina VS20] >EQC28134.1 hypothetical protein SDRG_14093 [Saprolegnia diclina VS20])

HSP 1 Score: 126.3 bits (316), Expect = 6.500e-26
Identity = 61/121 (50.41%), Postives = 85/121 (70.25%), Query Frame = 0 
Query:    4 YKVEAIEVLKGKPREAEAKDIITRVAKQVEPLLIKYHWRVGLLAEFFPSNRGLLGMNMNKGHKILLRLRPACAPSTFINIESILGTMLHELVHMEIGPHSTHFYERLEGLTHECEAMMAEG 125
            +++  I  LK + +  EA+ I+ R+A  V P++ K  +RV  L EFFP N  LLGMN+N G KI +RLRPA  P++F+  E +LGTMLHELVHM+IGPH+  FY+ L+ LT E E++MA+G
Sbjct:    3 WQIPTIRALKRQSQVDEAQRILERIASYVLPIMTKRQYRVQQLLEFFPKNANLLGMNVNHGWKIYVRLRPAERPTSFLPFEHLLGTMLHELVHMKIGPHNAAFYKLLDELTSEMESLMAQG 123
[Close]
BLAST of NO24G00230 vs. NCBI_GenBank
Match: OBZ83325.1 (DNA-dependent metalloprotease WSS1 [Choanephora cucurbitarum])

HSP 1 Score: 125.2 bits (313), Expect = 1.500e-25
Identity = 59/115 (51.30%), Postives = 81/115 (70.43%), Query Frame = 0 
Query:   10 EVLKGKPREAEAKDIITRVAKQVEPLLIKYHWRVGLLAEFFPSNRGLLGMNMNKGHKILLRLRPACAPSTFINIESILGTMLHELVHMEIGPHSTHFYERLEGLTHECEAMMAEG 125
            +VLK KPR AEA +++ +VA QV+P+LIK+ W++  L EFFP N  LLG+N+NKG +I LRLRP    + F+    ILGT+LHE+VH+  GPH   FY++LE L  E E++ A G
Sbjct:   11 QVLKRKPRSAEALELLKKVASQVKPILIKHGWKITTLYEFFPQNPNLLGINVNKGWQIKLRLRPQHDDTQFLEYHDILGTLLHEIVHIVRGPHDEMFYKKLEELWQETESLTASG 125
[Close]
BLAST of NO24G00230 vs. NCBI_GenBank
Match: GAQ88272.1 (Fe2+/Zn2+ regulated transporter [Klebsormidium nitens])

HSP 1 Score: 123.6 bits (309), Expect = 4.200e-25
Identity = 60/120 (50.00%), Postives = 86/120 (71.67%), Query Frame = 0 
Query:    5 KVEAIEVLKGKPREAEAKDIITRVAKQVEPLLIKYHWRVGLLAEFFPSNRGLLGMNMNKGHKILLRLRPACAPSTFINIESILGTMLHELVHMEIGPHSTHFYERLEGLTHECEAMMAEG 125
            KV  I+VLK K R  EA+ ++  VAKQV+P++ K  W+V +L+EF P+N  LLG+N+N+G ++ +RLRP    S F   E +LGTMLHEL H E+GPH+ +FY+ L+ +T ECE +MA+G
Sbjct:   11 KVWEIKVLK-KERAEEARKMLEAVAKQVQPIMRKRKWKVRMLSEFSPTNPALLGLNVNRGQEVKIRLRPHKRDSEFYPWEHVLGTMLHELTHNEVGPHNANFYKLLDEITKECEDLMAKG 129
[Close]
BLAST of NO24G00230 vs. NCBI_GenBank
Match: OAD01694.1 (hypothetical protein MUCCIDRAFT_111037 [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 123.6 bits (309), Expect = 4.200e-25
Identity = 59/124 (47.58%), Postives = 81/124 (65.32%), Query Frame = 0 
Query:    1 MSTYKVEAIEVLKGKPREAEAKDIITRVAKQVEPLLIKYHWRVGLLAEFFPSNRGLLGMNMNKGHKILLRLRPACAPSTFINIESILGTMLHELVHMEIGPHSTHFYERLEGLTHECEAMMAEG 125
            M+   V+  + L  KPR  EA  ++ R+A QV+P+L+K++W +  L EFFP+N  LLGMN NKG K+ LRLRP    + F+  E ILGT+LHE+ H+  GPH  HFY+ L+ L  E E +MA G
Sbjct:    1 MNNDPVKEYKALVRKPRHDEALQLLKRLASQVKPVLLKHNWTIKNLVEFFPNNPNLLGMNTNKGWKVNLRLRPHYDETQFLEYEDILGTLLHEMAHIVRGPHDEHFYKLLDELKQETELLMASG 124
[Close]
BLAST of NO24G00230 vs. NCBI_GenBank
Match: GAN03547.1 (WLM-domain-containing protein [Mucor ambiguus])

HSP 1 Score: 122.9 bits (307), Expect = 7.200e-25
Identity = 59/124 (47.58%), Postives = 81/124 (65.32%), Query Frame = 0 
Query:    1 MSTYKVEAIEVLKGKPREAEAKDIITRVAKQVEPLLIKYHWRVGLLAEFFPSNRGLLGMNMNKGHKILLRLRPACAPSTFINIESILGTMLHELVHMEIGPHSTHFYERLEGLTHECEAMMAEG 125
            M+   V+  + L  KPR  EA  ++ R+A QV+P+L+K++W +  L EFFP+N  LLGMN NKG KI LRLRP    + F+  + ILGT+LHE+ H+  GPH  HFY+ L+ L  E E +MA G
Sbjct:    1 MNNDPVKEYKALVRKPRHDEALQLLKRLASQVKPVLLKHNWTIKNLVEFFPNNPNLLGMNTNKGWKINLRLRPHYDETQFLEYQDILGTLLHEMAHIVRGPHDEHFYKLLDELRQETELLMASG 124
The following BLAST results are available for this feature:
BLAST of NO24G00230 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ29943.15.300e-2850.86conserved unknown protein [Ectocarpus siliculosus][more]
OQR94088.17.000e-2852.07hypothetical protein ACHHYP_01856 [Achlya hypogyna... [more]
XP_012197251.13.500e-2751.24hypothetical protein SPRG_03281 [Saprolegnia paras... [more]
XP_009838400.11.300e-2651.24hypothetical protein H257_12786 [Aphanomyces astac... [more]
XP_008876717.11.700e-2651.24hypothetical protein H310_11728 [Aphanomyces invad... [more]
XP_008618421.16.500e-2650.41hypothetical protein SDRG_14093 [Saprolegnia dicli... [more]
OBZ83325.11.500e-2551.30DNA-dependent metalloprotease WSS1 [Choanephora cu... [more]
GAQ88272.14.200e-2550.00Fe2+/Zn2+ regulated transporter [Klebsormidium nit... [more]
OAD01694.14.200e-2547.58hypothetical protein MUCCIDRAFT_111037 [Mucor circ... [more]
GAN03547.17.200e-2547.58WLM-domain-containing protein [Mucor ambiguus][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR114ngnoR114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00230.1NO24G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00230.1NO24G00230.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00230 ID=NO24G00230|Name=NO24G00230|organism=Nannochloropsis oceanica|type=gene|length=919bp
ATGAGCACGTACAAAGTCGAGGCCATCGAGGTCTTAAAGGGCAAGCCAAG
GGAGGCGGAAGCCAAGGACATCATCACCCGGGTGGCCAAGCAGgtgagag
aagggagggaggaaggaaggaatagggaaaaagggtggacgaacagattt
aaagcaaggtgaggaataaattctataggcagtggtgagctctcggacgg
caaagacttgagggagggagatggaaaaggaggagataagaaagtttgga
acggcatgtcttttcctgaaccttccttcctccctccctttctccctccg
ttctctccgtccctccctccctccctccagGTCGAGCCGCTTCTCATCAA
ATACCACTGGCGCGTCGGTCTACTCGCAGAATTCTTTCCCTCCAACCGAG
GGCTCCTGGGGATGAACATGAACAAAGGCCACAAGATATTGTTGCGTTTG
CGGCCTGCGTGTGCGCCTTCCACCTTTATAAATATCGAGTCAATCCTGGG
CACCATGCTACATGAGCTAGTGCACATGGAGATAGgtacatgccttccct
ctctccctccctccctccctacctacctaccttcattccttcctttctct
tctcaccttttcccatcgtgtcgacctctacgagcccgtcattctgatgc
ccatctccgtatgagcccgtcattctgatgcccatcaccctacgagcccg
tcattctgatgcccatcaccctatgagcccgccattctgatgcctatctc
cctatgagcccgtcgttttcagaatgatgcccatctctttatgtccttcc
ctccctcccacccttcccccctccctccctccctccctccagGCCCGCAC
TCCACCCATTTTTACGAGAGGCTGGAGGGCCTGACACACGAATGCGAGGC
GATGATGGCGGAGGGATGA
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protein sequence of NO24G00230.1

>NO24G00230.1-protein ID=NO24G00230.1-protein|Name=NO24G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MSTYKVEAIEVLKGKPREAEAKDIITRVAKQVEPLLIKYHWRVGLLAEFF
PSNRGLLGMNMNKGHKILLRLRPACAPSTFINIESILGTMLHELVHMEIG
PHSTHFYERLEGLTHECEAMMAEG*
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Synonyms
Publications