NO24G00220, NO24G00220 (gene) Nannochloropsis oceanica

Overview
NameNO24G00220
Unique NameNO24G00220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length6643
Alignment locationchr24:66408..73050 -

Link to JBrowse

Properties
Property NameValue
DescriptionDNA polymerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:66408..73050 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003887DNA-directed DNA polymerase activity
GO:0003887DNA-directed DNA polymerase activity
GO:0003677DNA binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO:0006261DNA-dependent DNA replication
GO:0071897DNA biosynthetic process
GO:0006261DNA-dependent DNA replication
GO:0006260DNA replication
Vocabulary: INTERPRO
TermDefinition
IPR001098DNA-dir_DNA_pol_A_palm_dom
IPR002298DNA_polymerase_A
Homology
BLAST of NO24G00220 vs. NCBI_GenBank
Match: CBJ29252.1 (DNA polymerase [Ectocarpus siliculosus])

HSP 1 Score: 244.6 bits (623), Expect = 1.300e-60
Identity = 200/702 (28.49%), Postives = 296/702 (42.17%), Query Frame = 0
Query:  389 FLMRCEEAGEVSMALLYHDLSSSYATLTRRFCTPKSPCLRWNCACDKHVRAEQAVAPVVAALFLLPSLPGQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYSLPLRELGTTVYDRWICLAMLLQQPQTTKIFFSAQVNLFPFFGFLLRQQQ--------------------------------------------CHPPSFAPSSTSRWLDGCYKSSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVTRAVREVLQQLHSTRLLWHRMQAQLHQRHLMQVFRQVEMPLLPLLSAMEVYGVGFAVDKVHPLVSSLEAKRRLLQSLIYQEAGLGSDWNIESPEQ---------------------HASTSEAHLEQIKEKHPVIPSLLRYRTLAKSMRAFLESLPRHATRVGALQRXXXXXXXXXXXGDRIHAQWLQCMVRTGRLSSQHPNMQTIPKELE-LEG-DKIVIRDLFCASEGTVLLAADYSQVEMRVLAALSRDPRLCQLFRQ------------EGDVYCNLMSELLKKPPAAISKAERNQAKVVTLGLIYGMGAAAASKKLGTSVQGATHLINSFFQAYPFVRRWMEETKAH-------------ARKHGFVCTMLGRRRLLSSINAS-DPASRSQAERQSVNSIIQGSAADLMKLAMIALQTRVDQAW 998
            FL RCE +G  S+++L+ DL++S++ +T + C P   C RWNCAC +  RA+QA AP++ A+  LP    +                                                Y LPL +  T+  +RW   A L+  P         +V L P   +  R +                                                     +  + W+    K + +                                  +  AV            L  ++ A+L    ++    QVEMP +P+L+ MEV GV F  ++V     +L      L+    +  G G D+N+ SP+Q                     HASTS   LE ++ KH V+  +L +R + K    +++ L   A  +GA                RIHA W Q   RTGRLS   PN+Q +PK  + L G + + +RD F A+    L+AADYSQ+EMRVLA   RDP L  LF               GDVY  L +++  K    +S  ERN+AKVV LG+ YGMG    +KKL  +   A  L+ SF +A+P +  +M  T+ +             AR++G+VCT+ GRRR L  IN S + A+++QAERQ+VNS++QG+AAD+MK AM+ +  R+D AW
Sbjct:  448 FLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRQPRAQQATAPMIGAVVYLPG-RAERIAWGASAGTESDTSGCSQEDDFEEGEMYLLPLAACVGEDKEAAKAAGYHLPL-DCETSYDERWAAFAKLVALP-------VKKVALMPLIAWRRRPESRTFLARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSGLFDTRVAAWMTDTGK-ADKALEFEALCVSWLKGEGSDAEGVNAGSGDGGRLPAIVAAVARAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPERVTRFSDALGNHLEGLKRTAVKAVG-GRDFNLASPDQVADVLFKHLKLPSPPVKAGSVHASTSAEVLEGLQGKHAVVAPILEFRGVNKYKTTYVDKLAERA--LGAAAAESAVPASQGAGAARIHATWNQTSARTGRLSCSRPNLQQMPKGSDPLAGVEGVNVRDAFSATRSFTLMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGASTGGGDVYRKLAAQVFAKEEHGVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQGLVRSFLKAFPGIEPFMAATRRYGTPCRHQISQRRFARENGYVCTLTGRRRHLPEINNSRNAAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLD-AW 1135          
BLAST of NO24G00220 vs. NCBI_GenBank
Match: OGG94068.1 (DNA polymerase I [Candidatus Lambdaproteobacteria bacterium RIFOXYD2_FULL_50_16])

HSP 1 Score: 223.4 bits (568), Expect = 3.200e-54
Identity = 142/397 (35.77%), Postives = 220/397 (55.42%), Query Frame = 0
Query:  619 RAVREVLQQLHSTRLLWHRMQAQLHQRHLMQVFRQVEMPLLPLLSAMEVYGVGFAVDKVHPLVSSLEAKRRLLQSLIYQEAGLGSDWN--------IESPEQHA------------STSEAHLEQIKEKHPVIPSLLRYRTLAKSMRAFLESLPRHATRVGALQRXXXXXXXXXXXGDRIHAQWLQCMVRTGRLSSQHPNMQTIPKELELEGDKIVIRDLFCASEGTVLLAADYSQVEMRVLAALSRDPRLCQLFRQEGDVYCNLMSELLKKPPAAISKAERNQAKVVTLGLIYGMGAAAASKKLGTSVQGATHLINSFFQAYPFVRRWMEETKAHARKHGFVCTMLGRRRLLSSINASDPASRSQAERQSVNSIIQGSAADLMKLAMIALQTRVDQ 996
            +A+R   +   +  LL+ + + QL ++ L  +++++E+PLL  L+ ME  GV    D++  + + +E     L+  IY+EAG   + N        + SPE+ A            ST  + LEQ+  +H +   LL YR+  K +  +LE LP                        RIH  ++Q +  TGRL+S++PN+Q IP + E EG +  IR  F A  G VL +ADYSQ+E+R LA LS DP L ++F+  GDV+    + + + PP  ++  +R  AK +  G+IYGMGA   S ++G S + A   I+++F  YP ++ +M+ET    R  G+V T+ GRRR    IN+ +  +R+ AER ++NS IQGSAADL+KLAMI L+T +DQ
Sbjct:  461 QALRYAAEDAEAALLLYEKFEPQLAEKGLKALYQKIEIPLLRCLAEMECQGVLVDKDRLKEIQTGIEQGLTQLEEAIYKEAGERFNLNSTQQLGEILFSPEKMAIGGAKKKTKTGYSTDASVLEQLAPEHKIAKLLLEYRSKTKLINTYLEPLP----------------LLINPQTGRIHTSYMQTVAATGRLASKNPNLQNIPIKGE-EGRQ--IRSAFVAPPGKVLASADYSQIELRFLAHLSADPGLIEVFKAGGDVHLQTAAAIYQLPPDLVTSEQRRAAKAINFGIIYGMGAFRLSSEIGVSNKEAKAFIDAYFARYPGIKSYMDETLDFVRSKGYVETLFGRRRGFDEINSKNHLARASAERAAINSRIQGSAADLIKLAMIDLKTVIDQ 838          
BLAST of NO24G00220 vs. NCBI_GenBank
Match: OGP80839.1 (DNA polymerase I [Deltaproteobacteria bacterium RBG_13_65_10])

HSP 1 Score: 218.8 bits (556), Expect = 7.900e-53
Identity = 141/382 (36.91%), Postives = 211/382 (55.24%), Query Frame = 0
Query:  634 LWHRMQAQLHQRHLMQVFRQVEMPLLPLLSAMEVYGVGFAVDKVHPLVSSLEAKRRLLQSLIYQEAGLGSDWNIESPEQHA--------------------STSEAHLEQIKEKHPVIPSLLRYRTLAKSMRAFLESLPRHATRVGALQRXXXXXXXXXXXGDRIHAQWLQCMVRTGRLSSQHPNMQTIPKELELEGDKIVIRDLFCASEGTVLLAADYSQVEMRVLAALSRDPRLCQLFRQEGDVYCNLMSELLKKPPAAISKAERNQAKVVTLGLIYGMGAAAASKKLGTSVQGATHLINSFFQAYPFVRRWMEETKAHARKHGFVCTMLGRRRLLSSINASDPASRSQAERQSVNSIIQGSAADLMKLAMIALQTRVDQ 996
            L H+++ +L    L  +FR++E+PLL +L+ ME+ GV    D +  L  + + + R ++  +Y  A  G+ +N+ SP+Q A                    ST    LE++   H +   ++RYR LAK    ++++LP                        RIH  + Q +  TGRLSS  PN+Q IP     EG +  IR  F  + G  LL+ADYSQ+E+R+LA LS DP L   F  + D++    SE+   PPA +S+A+R++AK V  GL+YG GA   S++LG S + A   I  +FQ +  VR + E T   AR+ G+V T+L RRR LS I + +  +RS AER +VN+ IQGSAADL+K+AM+A+Q R+D+
Sbjct:   33 LVHKLEPRLAADGLEDLFRRIEIPLLVVLARMEMNGVLIDTDLLQRLSEAFDVELRTIEDRVYALA--GAQFNLNSPKQLAVILYEKLRLPVLKRTRKGGISTDTDVLERLAPDHALPREVVRYRQLAKLKGTYVDTLP----------------ALIHPETGRIHTSYNQTVTATGRLSSSDPNLQNIPIRTP-EGRE--IRRAFVPAPGCRLLSADYSQIELRILAHLSEDPTLIAAFLGDEDIHRRTASEVYGVPPAQVSEAQRSRAKAVNFGLMYGQGAYGLSQQLGISTREAEEYIEGYFQHFASVRAYFERTLEEARRRGYVMTLLNRRRYLSEIQSENRQARSAAERMAVNTTIQGSAADLIKVAMLAVQDRLDR 393          
BLAST of NO24G00220 vs. NCBI_GenBank
Match: WP_006004310.1 (DNA polymerase I [Desulfovibrio piger] >EEB34582.1 DNA-directed DNA polymerase [Desulfovibrio piger ATCC 29098])

HSP 1 Score: 214.5 bits (545), Expect = 1.500e-51
Identity = 135/371 (36.39%), Postives = 206/371 (55.53%), Query Frame = 0
Query:  639 QAQLHQRHLMQVFRQVEMPLLPLLSAMEVYGVGFAVDKVHPLVSSLEAKRRLLQSLIYQEAGLGSDWNIESPEQ--------------------HASTSEAHLEQIKEKHPVIPSLLRYRTLAKSMRAFLESLPRHATRVGALQRXXXXXXXXXXXGDRIHAQWLQCMVRTGRLSSQHPNMQTIPKELELEGDKIVIRDLFCASEGTVLLAADYSQVEMRVLAALSRDPRLCQLFRQEGDVYCNLMSELLKKPPAAISKAERNQAKVVTLGLIYGMGAAAASKKLGTSVQGATHLINSFFQAYPFVRRWMEETKAHARKHGFVCTMLGRRRLLSSINASDPASRSQAERQSVNSIIQGSAADLMKLAMIAL 990
            + ++ +  L+++FR++EMPLLP+L+ ME  GV          +  ++ +   L + +Y+ A  G+ +NI S +Q                     ASTS+  LE++  +HPV+ S+L+YR L K    +L+ LPR     G                 RIH  + Q    TGRLSS +PN+Q IP    L G +  +R  F A  G +L++ADYSQVE+RVLA +S+DP L + FR   D++    + +   PP  +S  +R  AK +  GLIYGMGA   +++L  S   A   I  +F+    ++ + E  +A ARKHGFV T+ GRRRLL  IN++   + + A RQ++N++IQGSAAD++KLAM+A+
Sbjct:  502 EQRMEKDGLLELFRRLEMPLLPVLAGMEQSGVAIDAAAFRAFLDDVQGQLDQLTAHVYELA--GTQFNIRSAQQLGDVLFNGLGLPAPRKTKGGQASTSQQTLEKLAGQHPVVDSILQYRKLEKMRSTYLDPLPRLVDPQG-----------------RIHTTFNQKATATGRLSSSNPNLQNIPVRGPL-GKR--MRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALLEAFRNGEDIHARTAALVYDLPPDQVSPDQRRNAKTINFGLIYGMGAQKLAQELKISTTQAKDFIARYFERLQGLKEFYEGVEASARKHGFVTTLGGRRRLLPDINSASGQAAALARRQAINTVIQGSAADIIKLAMLAV 850          
BLAST of NO24G00220 vs. NCBI_GenBank
Match: WP_072331674.1 (DNA polymerase I [Desulfovibrio piger] >SFV72011.1 DNA polymerase I [Desulfovibrio piger])

HSP 1 Score: 214.5 bits (545), Expect = 1.500e-51
Identity = 136/369 (36.86%), Postives = 204/369 (55.28%), Query Frame = 0
Query:  641 QLHQRHLMQVFRQVEMPLLPLLSAMEVYGVGFAVDKVHPLVSSLEAKRRLLQSLIYQEAGLGSDWNIESPEQ--------------------HASTSEAHLEQIKEKHPVIPSLLRYRTLAKSMRAFLESLPRHATRVGALQRXXXXXXXXXXXGDRIHAQWLQCMVRTGRLSSQHPNMQTIPKELELEGDKIVIRDLFCASEGTVLLAADYSQVEMRVLAALSRDPRLCQLFRQEGDVYCNLMSELLKKPPAAISKAERNQAKVVTLGLIYGMGAAAASKKLGTSVQGATHLINSFFQAYPFVRRWMEETKAHARKHGFVCTMLGRRRLLSSINASDPASRSQAERQSVNSIIQGSAADLMKLAMIAL 990
            +L +  L+++FR++EMPLLP+L+ ME  GV          +  ++ +   L + +Y+ A  G+ +NI S +Q                     ASTS+  LE++  +HPV+ S+L+YR L K    +L+ LPR     G                 RIH  + Q    TGRLSS +PN+Q IP    L G +  +R  F A  G +L++ADYSQVE+RVLA +S+DP L + FR   D++    + +   PP  +S  +R  AK +  GLIYGMGA   +++L      A   I  +F+    ++ + E  +A ARKHGFV T+ GRRRLL  INA+   + + A RQ++N++IQGSAAD++KLAM+A+
Sbjct:  504 RLEKDGLLELFRRLEMPLLPVLAGMEQTGVAIDAAAFRAFLDDVQGRLDQLTAHVYELA--GTQFNIRSAQQLGDVLFNGLGLPAPRKTKGGQASTSQQTLEKLAGQHPVVDSILQYRKLEKMRSTYLDPLPRLVDPQG-----------------RIHTTFNQKATATGRLSSSNPNLQNIPVRGPL-GKR--MRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALLEAFRNGEDIHARTAALVYDLPPDQVSPDQRRNAKTINFGLIYGMGAQKLAQELKIGTAQARDFIARYFERLQGLKAFYEGVEASARKHGFVTTLGGRRRLLPDINAASGQAAALARRQAINTVIQGSAADIIKLAMLAV 850          
BLAST of NO24G00220 vs. NCBI_GenBank
Match: WP_093393805.1 (DNA polymerase I [Thermodesulforhabdus norvegica] >SFM62522.1 DNA polymerase I [Thermodesulforhabdus norvegica])

HSP 1 Score: 213.4 bits (542), Expect = 3.300e-51
Identity = 132/369 (35.77%), Postives = 203/369 (55.01%), Query Frame = 0
Query:  638 MQAQLHQRHLMQVFRQVEMPLLPLLSAMEVYGVGFAVDKVHPLVSSLEAKRRLLQSLIYQEAGLGSDWNIESPEQHA-------------------STSEAHLEQIKEKHPVIPSLLRYRTLAKSMRAFLESLPRHATRVGALQRXXXXXXXXXXXGDRIHAQWLQCMVRTGRLSSQHPNMQTIPKELELEGDKIVIRDLFCASEGTVLLAADYSQVEMRVLAALSRDPRLCQLFRQEGDVYCNLMSELLKKPPAAISKAERNQAKVVTLGLIYGMGAAAASKKLGTSVQGATHLINSFFQAYPFVRRWMEETKAHARKHGFVCTMLGRRRLLSSINASDPASRSQAERQSVNSIIQGSAADLMKLAMI 988
            ++ +L +  LM +F  +E+PL+ +L  ME +GV    +++H L   LE K +  +  IY+ A  G ++NI+SP+Q A                   ST  + LE++   HP+   +L YR+LAK    +++SLP+                       RIH  + Q +  TGRLSS +PN+Q IP   + EG +  IR+ F A EG  L+AADYSQ+E+RVLA  S DP+L + F +  D++ +  +E+ +     ++   R QAK +  G+IYGMG    SK LG S   A  +I  +F+ Y  V+R+++ET   A + GFV T++GR+R +  + +     R Q ER +VN+ IQG+AADL+K AMI
Sbjct:  493 LRERLTKEDLMDLFTSIELPLIEILGTMEHHGVLIDENRLHDLSKELEVKLQRCEEEIYRLA--GQEFNIQSPKQLAEILFNRLGLPVIKKTKTGPSTDMSVLEELALHHPIAQEILAYRSLAKLKNTYVDSLPQ----------------MINPETGRIHTSYNQTVTATGRLSSSNPNLQNIPIRTD-EGRR--IREAFIAPEGCTLVAADYSQIELRVLAHYSGDPKLLEAFARGDDIHASTAAEVFQVKREEVTPEMRRQAKAINFGIIYGMGPFGLSKALGISKTEAKRIIEEYFERYSGVKRFIDETVQKATERGFVRTLMGRKRSIPELQSKSKTVRQQGERLAVNTTIQGTAADLIKKAMI 840          
BLAST of NO24G00220 vs. NCBI_GenBank
Match: WP_014938732.1 (DNA polymerase I [Riemerella anatipestifer] >AFR36463.1 DNA polymerase I - 3'-5' exonuclease and polymerase domain protein [Riemerella anatipestifer RA-CH-1] >AIH01245.1 DNA polymerase i [Riemerella anatipestifer CH3] >OBP42993.1 DNA polymerase I [Riemerella anatipestifer] >OBP64928.1 DNA polymerase I [Riemerella anatipestifer])

HSP 1 Score: 212.2 bits (539), Expect = 7.400e-51
Identity = 129/381 (33.86%), Postives = 213/381 (55.91%), Query Frame = 0
Query:  634 LWHRMQAQLHQRHLMQVFRQVEMPLLPLLSAMEVYGVGFAVDKVHPLVSSLEAKRRLLQSLIYQEAGLGSDWNIESPEQ---------------------HASTSEAHLEQIKEKHPVIPSLLRYRTLAKSMRAFLESLPRHATRVGALQRXXXXXXXXXXXGDRIHAQWLQCMVRTGRLSSQHPNMQTIPKELELEGDKIVIRDLFCASEGTVLLAADYSQVEMRVLAALSRDPRLCQLFRQEGDVYCNLMSELLKKPPAAISKAERNQAKVVTLGLIYGMGAAAASKKLGTSVQGATHLINSFFQAYPFVRRWMEETKAHARKHGFVCTMLGRRRLLSSINASDPASRSQAERQSVNSIIQGSAADLMKLAMIALQTRV 994
            L+     QL +  + +VF ++EMPL+ +L+ ME+ GV    + +     SLE   ++L+  I+++A  G ++NI SP+Q                       STSE  L+++  KH +I  +L YR L K    ++++LP   + +                  R+H  + Q +  TGRL+S +PN+Q IP   E  G +  +R  F AS+G  +++ADYSQ+E+R++A +S +  +   F++  D++ +  S+L   P + +SK +R+QAK V  G+IYG  A A + + G S   A  LI+S+++ YP ++ +M E    ARK G+V T++GRRR L  IN+++   R  AER +VN+ IQGSAAD++KLAMI + + +
Sbjct:  515 LYEIFSPQLRKEEVEEVFYKIEMPLVKVLAKMELAGVALDKEWLKDESISLEQDLKILEGQIFEQA--GEEFNINSPKQLGDILFEKLKLDPKAKKTKTGQYSTSEDVLQKLSHKHEIIKLILEYRQLQKLKSTYVDALPNQISPIDG----------------RVHTSFAQTVAATGRLASNNPNLQNIPIRTE-RGQQ--VRGAFVASKGAKIVSADYSQIELRLIAEISGEETMINAFKEGQDIHASTASKLFDVPLSEVSKTQRSQAKTVNFGIIYGQSAFALADQTGLSRTDAKQLIDSYYETYPKLKAFMAEQVQVARKKGYVETIMGRRRHLKDINSNNFVVRGHAERNAVNAPIQGSAADIIKLAMIKIDSEI 874          
BLAST of NO24G00220 vs. NCBI_GenBank
Match: WP_052911075.1 (DNA polymerase I [Riemerella anatipestifer])

HSP 1 Score: 212.2 bits (539), Expect = 7.400e-51
Identity = 129/381 (33.86%), Postives = 214/381 (56.17%), Query Frame = 0
Query:  634 LWHRMQAQLHQRHLMQVFRQVEMPLLPLLSAMEVYGVGFAVDKVHPLVSSLEAKRRLLQSLIYQEAGLGSDWNIESPEQ---------------------HASTSEAHLEQIKEKHPVIPSLLRYRTLAKSMRAFLESLPRHATRVGALQRXXXXXXXXXXXGDRIHAQWLQCMVRTGRLSSQHPNMQTIPKELELEGDKIVIRDLFCASEGTVLLAADYSQVEMRVLAALSRDPRLCQLFRQEGDVYCNLMSELLKKPPAAISKAERNQAKVVTLGLIYGMGAAAASKKLGTSVQGATHLINSFFQAYPFVRRWMEETKAHARKHGFVCTMLGRRRLLSSINASDPASRSQAERQSVNSIIQGSAADLMKLAMIALQTRV 994
            L+     QL +  + +VF ++EMPL+ +L+ ME+ GV    + +     SLE   ++L+  I+++A  G ++NI SP+Q                       STSE  L+++  KH +I  +L YR L K    ++++LP   + +                  R+H  + Q +  TGRL+S +PN+Q IP   E  G +  +R  F AS+G  +++ADYSQ+E+R++A +S +  + + F++  D++ +  S+L   P + +SK +R+QAK V  G+IYG  A A + + G S   A  LI+S+++ YP ++ +M E    ARK G+V T++GRRR L  IN+++   R  AER +VN+ IQGSAAD++KLAMI + + +
Sbjct:  515 LYEIFSPQLRKEEVEEVFYKIEMPLVKVLAKMELAGVALDKEWLKDESISLEQDLKILEGQIFEQA--GEEFNINSPKQLGDILFEKLKLDPKAKKTKTGQYSTSEDVLQKLSHKHEIIKLILEYRQLQKLKSTYVDALPNQISPIDG----------------RVHTSFAQTVAATGRLASNNPNLQNIPIRTE-RGQQ--VRGAFVASKGAKIVSADYSQIELRLIAEISGEETMIKAFQEGQDIHASTASKLFDVPLSEVSKTQRSQAKTVNFGIIYGQSAFALADQTGLSRTDAKQLIDSYYETYPKLKAFMAEQVQVARKKGYVETIMGRRRHLKDINSNNFVVRGHAERNAVNAPIQGSAADIIKLAMIKIDSEI 874          
BLAST of NO24G00220 vs. NCBI_GenBank
Match: PIR83214.1 (hypothetical protein COU19_01725 [Candidatus Kaiserbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_56_12])

HSP 1 Score: 211.8 bits (538), Expect = 9.700e-51
Identity = 121/360 (33.61%), Postives = 198/360 (55.00%), Query Frame = 0
Query:  650 VFRQVEMPLLPLLSAMEVYGVGFAVDKVHPLVSSLEAKRRLLQSLIYQEAGLGSDWNIESPEQ----------------------HASTSEAHLEQIKEKHPVIPSLLRYRTLAKSMRAFLESLPRHATRVGALQRXXXXXXXXXXXGDRIHAQWLQCMVRTGRLSSQHPNMQTIPKELELEGDKIVIRDLFCASEGTVLLAADYSQVEMRVLAALSRDPRLCQLFRQEGDVYCNLMSELLKKPPAAISKAERNQAKVVTLGLIYGMGAAAASKKLGTSVQGATHLINSFFQAYPFVRRWMEETKAHARKHGFVCTMLGRRRLLSSINASDPASRSQAERQSVNSIIQGSAADLMKLAMI 988
            V+ ++E PL+P++ AM   GV      +  L  +  A+   ++  IY+ A  G ++N+ SP+Q                        ST E+ LE+I+ +HP++  +L YR L K +  ++++LP      G                 R+HA++LQ    TGR++SQ+PN+Q IP    + G    IR  F A+ G  L+A DYSQ+E+R+ A LSRD +LC +F++  DV+  + +++   PP A+    R +AKV+  G++YGMG  A   +LG++   A   + ++F  +  +  ++E TK  ARKHG+  T+ GRRR    + +S P  R+QAER ++N+ IQG+ AD++KLAM+
Sbjct:  387 VYEKIEKPLIPVVQAMSARGVLIDTSVLKKLAQTYRAELEKIEKRIYKLA--GHEFNVSSPKQLGEVLFDELAIIPEKQKKTAGGQRSTRESELEKIRTEHPIVNEILEYRELKKLLSTYIDNLPPLLGEDG-----------------RLHAEFLQLGAATGRMASQNPNLQNIPLH-SVRGQ--AIRHAFIATPGYTLVALDYSQIELRIAAILSRDEKLCDIFKKGRDVHTEVAAQVFGVPPEAVDGEMRRRAKVINFGVLYGMGVNALRAQLGSTTAEAHQFLENYFATFTTLAEYLERTKGFARKHGYTETLFGRRRQFPEMKSSLPYVRAQAERMAINAPIQGTNADIVKLAMV 724          
BLAST of NO24G00220 vs. NCBI_GenBank
Match: WP_057953073.1 (DNA polymerase I [Salinivirga cyanobacteriivorans] >ALO15633.1 DNA polymerase I [Salinivirga cyanobacteriivorans])

HSP 1 Score: 211.1 bits (536), Expect = 1.700e-50
Identity = 124/373 (33.24%), Postives = 215/373 (57.64%), Query Frame = 0
Query:  638 MQAQLHQRHLMQVFRQVEMPLLPLLSAMEVYGVGFAVDKVHPLVSSLEAKRRLLQSLIYQEAGLGSDWNIESPEQ---------------------HASTSEAHLEQIKEKHPVIPSLLRYRTLAKSMRAFLESLPRHATRVGALQRXXXXXXXXXXXGDRIHAQWLQCMVRTGRLSSQHPNMQTIPKELELEGDKIVIRDLFCASEGTVLLAADYSQVEMRVLAALSRDPRLCQLFRQEGDVYCNLMSELLKKPPAAISKAERNQAKVVTLGLIYGMGAAAASKKLGTSVQGATHLINSFFQAYPFVRRWMEETKAHARKHGFVCTMLGRRRLLSSINASDPASRSQAERQSVNSIIQGSAADLMKLAMIAL 990
            ++ QL    L ++F +VEMPL+ +L+ ME YGV    + +  + + L  +   L+  I++ AG+  ++NI SP+Q                       +T E  LE++ +KH ++P++L +R L+K +  ++E+LP+                       RIH  + Q +  TGRLSS +PN+Q IP  +  E  KI+ +      +  VLLAADYSQ+E+R++A LS+D  + + F+ + D++ +  ++L K  P  +++ +R QAK V  G+IYG+ A   S+  G S + A  LI+++F+ YP V+ +M+++ A AR+ G+  T++GR+R L  IN+++   RS AER ++N+ IQGS+AD++K+AM+ +
Sbjct:  501 LEKQLKDFKLDRLFNEVEMPLIHVLADMEYYGVTIDSNALKNIAAQLRNELIALEQKIHEYAGM--EFNIASPKQLGEVLFEKLKITDKPKRTKTKQYATGEDVLEKLADKHEIVPAILEFRGLSKLLNTYVEALPK----------------LVNDKTGRIHTSYNQAVTSTGRLSSTNPNLQNIP--IRDEKGKIIRKAFIPRDDEHVLLAADYSQIELRIMAHLSQDEAMLEAFKNDEDIHLSTAAKLFKLKPEDVTREQRGQAKGVNFGIIYGISAFGLSQNTGMSNKDAKQLIDNYFETYPNVKAFMDKSIATAREKGYAETLMGRKRFLPDINSNNRTVRSAAERNAINAPIQGSSADMIKVAMVRI 853          
The following BLAST results are available for this feature:
BLAST of NO24G00220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CBJ29252.11.300e-6028.49DNA polymerase [Ectocarpus siliculosus][more]
OGG94068.13.200e-5435.77DNA polymerase I [Candidatus Lambdaproteobacteria ... [more]
OGP80839.17.900e-5336.91DNA polymerase I [Deltaproteobacteria bacterium RB... [more]
WP_006004310.11.500e-5136.39DNA polymerase I [Desulfovibrio piger] >EEB34582.1... [more]
WP_072331674.11.500e-5136.86DNA polymerase I [Desulfovibrio piger] >SFV72011.1... [more]
WP_093393805.13.300e-5135.77DNA polymerase I [Thermodesulforhabdus norvegica] ... [more]
WP_014938732.17.400e-5133.86DNA polymerase I [Riemerella anatipestifer] >AFR36... [more]
WP_052911075.17.400e-5133.86DNA polymerase I [Riemerella anatipestifer][more]
PIR83214.19.700e-5133.61hypothetical protein COU19_01725 [Candidatus Kaise... [more]
WP_057953073.11.700e-5033.24DNA polymerase I [Salinivirga cyanobacteriivorans]... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR114ngnoR114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00220.1NO24G00220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|640999gene_7247Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00220.1NO24G00220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00220 ID=NO24G00220|Name=NO24G00220|organism=Nannochloropsis oceanica|type=gene|length=6643bp
ATGCGCGCGAATAGCGAGCGGGAAGTCGTCCTGCGCCCCACGCTCCTAAA
CGCCCCGCCTCCCTCCCTCCTTCACTCCCTTGCTGTCCGGGAGCCTCTGG
CATTCCAATGGACTCTCTATCCCTTGCATCCGCCATTATCCTACTACAAC
CAGAGGGATGGTGATGAGGAGGGAGGAGATGGGGCCGGGGGGGAAAGAGG
GAAGGAGGGAGCGTGGATGGCGTTGCGCAGGGCAAGGCGACTACGGGCGA
GGAAGAGGGTGCAGCTGGAGGAGGAGAGGAAGGTGAAGAACGAGGGAGGG
AAGGAGGAGAAGGAGGTAGGACGAGGAGGAGGGAAGCGGGGCAGCATCAG
TTGTGAGGAGAGTGAGGGGAGAAGTAGCCCGCCGCTACCATGGTTTGAGA
TGGGAGGATGTGGAGGTGGAGGAGGAGAAGGAGGATCGAGGGAAGAGGGA
GAGGGGACAAAGAAATATAGTGAGAAAGAACTAGAGAATGGCGGGAAAGG
AGGAGGAGGAGGAGGAGGGGGAGGAGAGGTAGGAGGAGTAGAAGACGAGC
AGCAGAGCTACCATCCTTACTTTCAACCATCGCACTTCCAGAAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAATATCGGGCGATGTCTCGAGATATGTA
TAGGCTCGGTGCCGGGGGAGGGACGAATGGAAGAAGGGAAGGAGAAGGAG
GAAGAGGAGGAGGAGGAGGAGAGTTTTCGTTGGAGGCCATGATGCGAGGA
GGAGGAGGGATGGATGGAGGGATAGGCGGTGGCGGGCCGTCACTCTCTCG
GCCGTCGAGCAGCAGCAGCAGCAGCAGCAGGGGTGGTGGTGGAAAGGAGG
GAGGGAGGAAGAGGAAGGGAGGGAAGGAGAACGATGGCCTTCCTCGTCCT
CCCGCCTCTCATCCAGCTTCTTCAACAAGTAGGCCGGAGAAGGAGAAACA
GCAGCAGCAGCAGCAGCCCCCTAAAAAGTCGAAAGCAACAACAGCAGCAG
AAGAAGAAATAATCGCAAGCGGGAAAAAAAGAGGGGGGGAAGAGGGAGGG
AAAGAAGGAGGGAGGGAGGGAGAGGTAACGTTGATGAACCTGCCCCTGGA
GGCCTTTGACCGGTTGGAAACGGCGTCGGTGATGCTGGGGAAAGAGAAGA
ACGATCTCAAGGACTTTTTGATGAGgtaggtaggtagggagggagggagg
gagggagggtatttgtgcacgagtgtgtgtctgtctgcgaggaggatggg
gaggaggaaggaaggagggatgggaagccacagggcttatcttctttttt
ctcttctcctcctcactctccttttcttcttcttcctccttcttatcatc
cttctcttgcccatccttctttcttctcctgctcctttcccttctccata
tccttctccttctcctccgcctcctcctccttcctcctctcccaccacca
ccaccaacaacagGTGCGAGGAGGCAGGAGAGGTATCCATGGCCCTCCTC
TATCACGATCTTTCATCCTCATACGCCACACTGACCAGGCGCTTCTGCAC
ACCCAAAAgtacgtgccttccctccctccctccctccctccctccctccc
ttcctccctcctctcagccactccccacatgtgggccatgctcccatcct
ttttccctccctctctgcctccctccctccctccctcagGCCCCTGCCTC
CGTTGGAATTGTGCCTGCGACAAACACGTGCGGGCCGAGCAGGCAGTCGC
TCCTGTTGTCGCCGCCCTCTTCCTCCTTCCCTCCCTCCCAGGCCAGGAAG
GAGGGACTGGGGGAGGGAGGGAGGGAGGGCGGGCGTTCTTCCTACCCCTC
GCTCCCTCGTCACGGCAAAAAAAACACAAGACTGCCTCCACTTCCTCCTC
GTCTTCGTCCTTCCTCCCGCCCTCCTCCTCCCCTTCCTCCTACTCCTTGC
CCTTGAGAGAGCTAGGAACGACAGTGTATGACCGCTGGATCTGTCTGGCC
ATGgtaagggagggaaggacggagggaaggacggagggaaggagggacgg
gcggcaggggagaagagggcagagaatcatgattgactggcaacgcttgc
cgtccctccctcccttcttcccccctccctccctcgctccagctccctca
acatgatgagggcacacgaggctcttttgagattcaacgctcaccctccc
tccctccctccccctttccctccagCTCCTCCAACAGCCGCAGACCACCA
AGATCTTCTTCTCGGCACAGGTCAATCTCTTTCCTTTCTTCGGCTTTCTC
CTACGCCAGCAGCAATGCCACCCTCCTTCCTTCGCTCCCTCGTCGACGTC
AAGGTGGCTGGATGGGTGCTACAAGAgtgagtccctccctccctccctcc
ctccctccttcctccccctcgcctcaaaccagtgacgatttcactcctcc
ttcgtatttctccctccatccctccctccctccctccctccctccctccc
tccctccctcagGCAGCTCAAGGAAAACGATCTCGAATACCTCCCCCTCC
TCGCCCGCGTCTTCCCCTCCGGAGGCCTCCCTCCCCTCCCgtcctccaag
ctggggagatgggcggtacgtcctccctccctccctccctccctccctcc
ctccctccctccctccctcccttcctccctccctcctccctccttcctcc
ttccaattcctccctcccctcccgtcctccaagCTGGGGAGATGGGCGgt
acgtcctccctccctccctccctccctccctccctccctccctccctccc
tccttctcctccctccctccctccttcctccttccaattcctccctcccc
ctcccgtcctccaagCTGGGGAGATGGGCGgtacgtcctccctccctccc
tcctccctccctccctccctccctccccctcccttcctccctccctccct
ccctccttcctccttccaattcctccctccctccttccgtcccttcctcc
ttccgtccctccctttctcccatcccgtcctcagccccctccctcctctc
cctccctccctccctccttccctccctccctccctacccagGCAAAGTCA
CACGGGCCGTCCGTGAAGTCCTCCAGCAGCTCCACTCCACCCGCCTCCTC
TGGCACCGCATGCAAGCACAGCTGCATCAACGCCATCTCATGCAGgtagt
gacacacaccctccccctcccctccctcccaccctccctccctccctccc
tccctccgaagtgcttccccatcctttaacccacacacacacatccttcc
ctccctccctttctcccttcccctctccctcccccctccctctccagGTC
TTCCGTCAGGTGGAGATGCCTCTCCTCCCCCTCCTCTCGGCCATGGAGGT
ATACGGCGTCGGGTTTGCGGTCGACAAGgtacgccctccctccctccctc
cctccctccctccctccctccctccctccattcctcaaggccagacgaaa
ccacccactctcaaccatatccccccctccctccctccctcagGTCCACC
CTCTTGTCTCCTCCCTCGAAGCCAAACGCCGCCTCCTCCAATCCCTAATT
TATCAGGAAGCAGGGCTTGGCTCCGACTGGAATATTGAAAGCCCCGAGCA
Ggtacgccctcccccctccctcccttcctcccttcttgaccgatgcatgt
cgacacctccctccctccctccctccctccctccccctccctcctccctc
cctccctccctcaggtggccgacgtcctgtacaccaagctccgcctccct
cccccccctcaccaccacgggcaagCACGCCTCGACCTCCGAGGCTCATT
TGGAGCAGATTAAAGAGAAGCATCCCGTCATACCATCACTGCTTCGCTAC
CGCACACTCGCGAAGgtacgccctctccctccctccctccctccctcctt
tcctctgtttgacacgtacttgtgatgacacactctatgaattactcctc
ccctccctcccccctccctccctccctccctccctccctcagAGCATGCG
GGCCTTCCTTGAATCCCTCCCTCGTCATGCCACGCGCGTGGGTGCCCTAC
AGCGCCAGCAGCAGCAGCAGAAAGGAGGAGGGGAAGGAGgtaggtagaga
gggaaggaaggagggagggagggagggagggaaggcattcagccagatgt
tgaggtggcacccttcatcccttatcaacgcttcctccctccctccctcc
cttcctcccttcctcctccctccctccctccctccctccccctcagGGGA
TCGGATCCATGCCCAATGGCTCCAGTGCATGGTTCGAACCGGCCGTCTCT
CCTCCCAGCACCCCAACATgtatgtccctccctccctcccctccctcccg
acctttcctactccctccctccctccctccctcagGCAAACCATTCCCAA
GGAGCTGGAGCTGGAGGGAGACAAGATCGTCATCCGAGACTTGTTCTGTG
CCTCTGgtcagtagggatggagggagagaagagagcagggagaaaaagga
taaggtgtatagctatagaaaagagagaagtgtatatctatatgtatgta
gatgtgtgtgtatgtatgtagataaaatatgtttatatatgtatgtatac
atgtatagatgagacatagacacctttcatcccatcgtgccaatcgctca
tacatatgtatatatgtacatatgtatacatatatatatgtatagatgtg
acagacacctctcatcccatcgtgccaatcgctcacacacccctccctcc
ctccccctccctccctcccttcagAGGGCACTGTCCTTCTGGCTGCCGAC
TATTCTCAGGTCGAGATGAGAGTCCTGGCAGCCCTCAGCCGAGACCCTCG
CCTCTGTCAGCTTTTTCGACAGGAGGGCGATGTCTACTGgtactgccctc
ctcctccctccctccctccctccctccctcccttcgtcctcgattcttgc
gaggtgtcgttgtcgtgagtggcgtcgtcttaagagtttccctctcccac
ccacttttgcattgcctccctccctccccctccctccctccctttcaccg
tgctccaccacgcccacttgcttgtcctccctccctccctccctctctac
ctccctccctcccttcctccgcagCAACCTCATGTCTGAACTTCTCAAGA
AGCCCCCGGCCGCCATCAGTAAAGCAGAGAGGAACCAAGCCAAGgtaggc
ccctcttaccctccctccctccctccctccctccctccctccctccattt
catcccaccttctaaaacgtttccccccttcctatgtctcttttctctct
tctaatccctccccccttcctccctccctccttctctttctcaaaaattc
tctccgtcactccctccctccattcctctctcccttcctcccgccctagG
TGGTTACCTTAGGTCTGATTTACGGCATGGGCGCCGCGGCCGCAAGCAAG
AAGCTCGgtagggagggagggagggagggagggagggagggagggaggga
gggagggagggagaagcggggaaagaaagaggatgcacttcaactgtgga
gggatatggatcattggtcttgtctgttctccctccctccctccccctcc
ctccatcttttccttccttcctttctcgggtacgggtatgctaggtcgcc
tctccgtgcctgaccctccctccctccctccctccctccctccctccctc
cctccctccctccctagGCACCTCGGTGCAAGGAGCCACTCATCTGATTA
ACTCCTTCTTCCAAGCTTACCCTTTTGTCAGGCGGTGGATGGAGGAGACA
AAGgtagagaaggagggagggagggagggagggagggagggagggaggga
gggagggagggggagggagggaagcgctgacaacctgagcgactcttgtc
gtatgtgtcaagagatggatggaagaaacaaagggagggagggacggaga
gagggacggagggaggggaaccaatgtcaagtagacgccttcacttcttc
tttttctctctcaccagaattcgtcgtacgctccctcattgtccctccct
ccctccctccctcctccctccctccctccctcccccagGCCCACGCCCGG
AAGCACGGCTTTGTGTGCACCATGCTCGGCCGTCGCCGGCTTCTCTCCTC
TATCAACGCCTCTGACCCGGCGTCCCGGAGCCAAGCCGAACGACAAAGCG
TCAACAGCATCATCCAAGgtgagcgtgagcattttcctcctccctccctc
cctccctccctccctcctccctccctcctccctccctcctccctccctcc
ctccctccctccctccctccctctttccctctttccctcccttcctctca
cttacactcgccctccctcccttcctccttctctccttcccacccaccca
tccatccacccctccctccctccctccctcccccccttcctcccaagGCT
CGGCAGCCGACCTGATGAAGCTCGCCATGATCGCCCTCCAAACACGCGTC
GACCAAGCCTGGACCGAGGGCGGGGGGAGGGCGGGGGGGAGGGCCGGGGG
AGGGAGGGAGAGGGAAGCCGGCGTTGGTGCTTCAGATCCATGA
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protein sequence of NO24G00220.1

>NO24G00220.1-protein ID=NO24G00220.1-protein|Name=NO24G00220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1024bp
MRANSEREVVLRPTLLNAPPPSLLHSLAVREPLAFQWTLYPLHPPLSYYN
QRDGDEEGGDGAGGERGKEGAWMALRRARRLRARKRVQLEEERKVKNEGG
KEEKEVGRGGGKRGSISCEESEGRSSPPLPWFEMGGCGGGGGEGGSREEG
EGTKKYSEKELENGGKGGGGGGGGGEVGGVEDEQQSYHPYFQPSHFQKQQ
QQQQQQQQYRAMSRDMYRLGAGGGTNGRREGEGGRGGGGGEFSLEAMMRG
GGGMDGGIGGGGPSLSRPSSSSSSSSRGGGGKEGGRKRKGGKENDGLPRP
PASHPASSTSRPEKEKQQQQQQPPKKSKATTAAEEEIIASGKKRGGEEGG
KEGGREGEVTLMNLPLEAFDRLETASVMLGKEKNDLKDFLMRCEEAGEVS
MALLYHDLSSSYATLTRRFCTPKSPCLRWNCACDKHVRAEQAVAPVVAAL
FLLPSLPGQEGGTGGGREGGRAFFLPLAPSSRQKKHKTASTSSSSSSFLP
PSSSPSSYSLPLRELGTTVYDRWICLAMLLQQPQTTKIFFSAQVNLFPFF
GFLLRQQQCHPPSFAPSSTSRWLDGCYKSSSRKTISNTSPSSPASSPPEA
SLPSPGEMGAGEMGGKVTRAVREVLQQLHSTRLLWHRMQAQLHQRHLMQV
FRQVEMPLLPLLSAMEVYGVGFAVDKVHPLVSSLEAKRRLLQSLIYQEAG
LGSDWNIESPEQHASTSEAHLEQIKEKHPVIPSLLRYRTLAKSMRAFLES
LPRHATRVGALQRQQQQQKGGGEGGDRIHAQWLQCMVRTGRLSSQHPNMQ
TIPKELELEGDKIVIRDLFCASEGTVLLAADYSQVEMRVLAALSRDPRLC
QLFRQEGDVYCNLMSELLKKPPAAISKAERNQAKVVTLGLIYGMGAAAAS
KKLGTSVQGATHLINSFFQAYPFVRRWMEETKAHARKHGFVCTMLGRRRL
LSSINASDPASRSQAERQSVNSIIQGSAADLMKLAMIALQTRVDQAWTEG
GGRAGGRAGGGREREAGVGASDP*
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Synonyms
Publications