NO24G00210, NO24G00210 (gene) Nannochloropsis oceanica

Overview
NameNO24G00210
Unique NameNO24G00210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1920
Alignment locationchr24:64267..66186 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:64267..66186 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
Homology
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BLAST of NO24G00210 vs. NCBI_GenBank
Match: XP_005854577.1 (hypothetical protein NGA_0174300 [Nannochloropsis gaditana CCMP526] >EKU21783.1 hypothetical protein NGA_0174300 [Nannochloropsis gaditana CCMP526] >EWM20311.1 Ubiquitin [Nannochloropsis gaditana])

HSP 1 Score: 152.5 bits (384), Expect = 1.800e-33
Identity = 87/179 (48.60%), Postives = 119/179 (66.48%), Query Frame = 0 
Query:   86 SLNMVYFGMPFKIDDIDFSQGETGTTVDGLKAKIEKEYNIPASEQMIVHDGVLLTNAVKLASKNIEPGTTLEVRHKIAIKEGTKMPMDKQGFTPEEMKELFNIDLASFRAIWEVKSEAGRELLKEGKALMKEKRNVLT---ALVKKLGAFFQGLGRKVKEGARKVLNVFGGLRKGGKKK 262
            SL +VYFGMPFKIDD+DFS+   G T+  +K +IE EY IPA+EQ +     LL +   L++ NI PG+TLEVRH+IA+KEG ++P +K  F+ EE+KE FNIDLASFRA WE   E   E+ +E    ++E R +L    A ++KLG FFQ + RK     + V  +F G +KGGK++
Sbjct:   57 SLTLVYFGMPFKIDDLDFSEA-AGLTIADVKKRIEAEYAIPATEQSLFLGTSLLDDTATLSAANITPGSTLEVRHEIALKEGVELPAEKHDFSFEELKEYFNIDLASFRAKWEATQE---EMKQEVLESVEEGRQILQHVGASLRKLGHFFQKMARKCLGLLQAVGRLFTGGKKGGKEE 231
The following BLAST results are available for this feature:
BLAST of NO24G00210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854577.11.800e-3348.60hypothetical protein NGA_0174300 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR123ngnoR123Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR114ngnoR114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00210.1NO24G00210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597953gene_7246Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101431g2gene10097Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00210.1NO24G00210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00210 ID=NO24G00210|Name=NO24G00210|organism=Nannochloropsis oceanica|type=gene|length=1920bp
CCCCCTTCTCATTCCCTCCTGCGCATGCGCAGCCTTTGTCCTCTAAAGTT
TTGTTGTCGTCTGGCAATCGCCGAGCACGCTTTTCTTGCGTAGTCTGCGG
GGCGGGGTGCCCGCATAGTTGGGAAGGCCGCAAGAACTACAGCCATAGCA
CCTATAGCAGGAGCCTGGTTCTTAGTCGTCTTCAGGAGGGCCTTCCCCTC
TATCTTCCCCTACACTGCGTTCCATCCCTCGATAATGCCATGAATCCCAC
ATATGATACGCTTCAAGTAGATATGTCTTGCAACCTGACTCCACCTCTCC
TCCCCCATTTCCTCTTCACAATTAAATACAGCTAGGCATCCAACCAGAGG
CCGTGTCCGCATTTCACCATGCCCCGCCCCTCCACCACCACTCCCTCCAT
CCTCCTGGTCCTACTCCTCCTCGCCCTTTCCCTTATTCTCTCTCCCGCCC
TGGAAACCAAGGACTTCAAAGCCGCCGCCGGTGCCGCTGTAGATGCTGTA
GAAGACGCTGCAGCAGCGGCAGGCCACGCCGCCTCGGACCTTCTCCACTC
TGCGGAAGCCGCGGTGGGAGACACGCTAGAAGCCATCGAGTCGGCCATTG
CTCCTTCCGAGGAAGCATCCTCGTCCCTGAATATGGTCTACTTCGGGATG
CCCTTTAAGATAGACGACATCGATTTCAGCCAAGGAGAGACGGGCACCAC
CGTCGATGGGCTCAAGGCCAAGATCGAGAAGGAGTACAACATCCCAGCCA
GCGAGCAGgtaggttagtgggtgtgatttacccttccactcttcctcccc
ctctctcttcctccattctccccaatttaccctctcctgtccgccttttc
agacgattgagggctcaccctcctctctctctccctccttttctcccgcc
ccatagATGATTGTTCATGATGGGGTGCTCTTGACCAACGCGGTGAAGCT
TGCCTCGAAGAATATCGAGCCCGGCACCACGCTTGAAGTCAGgtaagcaa
gacagtaatctgtacctatttttgttgtgtgtgtttttttctattttcaa
tgatgcaaaaataaatattcatttttatcgattccacagGCACAAAATCG
CCATCAAGGAGGGCACGAAGATGCCCATGGACAAGCAGGGCTTCACTCCC
GAGGAGATGAAGGAGCTTTTCAACATCGATCTCGCCAGCTTTCGCGCAAT
TTGGGAGGTCAAGTCGGAGGCAGGGAGGGAGCTCTTGAAGGAAGGCAAGG
CCCTCATGAAGGAGAAGAGAAACGTATTGACAGCCCTCGTGAAGAAACTC
GGGGCTTTTTTCCAGGGGTTGGGCAGGAAGGTGAAGGAGGGGGCGAGGAA
AGTCCTGAACGTGTTTGGAGGGTTGAGGAAGGGAGGGAAGAAGAAGGCAG
AACTCTAGAGCGTTTTTTTTGGGGTGGCCACCCTCCCTCCCTCCCTGCTT
TCCACTTTCTTTCCCTCCCTTTCTTGGTTCCTGCCTTCCTGTCTCTTTCT
GAAAGCTGATTGACTTTCAGAAGAAAGAGTGGAATGAGGTTGAAGAGACG
AGGAGGGAAGAGGGAAAGAAGGAGGGAGGGGTGACTGCATGCAGCGAAGG
ACAGAAGCGGGCGAAACATGATAATTTAAGAAAGATGAAAAAAGAAGAAA
AAAAAAAAAAAGCAGGGGAAGGTTCAAAAAGAAGAAGAGAAAGTTGAAGA
GGAGGAAAAAGAAGACGAAGGAATACAATTACACAACACCGAGACGCTAC
CGAGAAAGAAGCAAAGAGTTATTTATTACAGGTATATGCAGGTGCTGTGC
GTCTTCCTCCCTCCTTTTATCCCACTTCCTGCGTGTTCTAGAGCCTCTAT
CGTCACTCATCCCGGCTTCTGTGGACACAGACTTCAATTCATCTCATCCT
TCTACCTGAATGTATCTCAC
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protein sequence of NO24G00210.1

>NO24G00210.1-protein ID=NO24G00210.1-protein|Name=NO24G00210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MPRPSTTTPSILLVLLLLALSLILSPALETKDFKAAAGAAVDAVEDAAAA
AGHAASDLLHSAEAAVGDTLEAIESAIAPSEEASSSLNMVYFGMPFKIDD
IDFSQGETGTTVDGLKAKIEKEYNIPASEQMIVHDGVLLTNAVKLASKNI
EPGTTLEVRHKIAIKEGTKMPMDKQGFTPEEMKELFNIDLASFRAIWEVK
SEAGRELLKEGKALMKEKRNVLTALVKKLGAFFQGLGRKVKEGARKVLNV
FGGLRKGGKKKAEL*
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Synonyms
Publications