NO24G00140, NO24G00140 (gene) Nannochloropsis oceanica

Overview
NameNO24G00140
Unique NameNO24G00140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1459
Alignment locationchr24:44580..46038 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:44580..46038 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006461PLAC_motif_containing
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO24G00140 vs. NCBI_GenBank
Match: EWM20303.1 (Uncharacterized protein family Cys-rich, partial [Nannochloropsis gaditana])

HSP 1 Score: 89.7 bits (221), Expect = 1.100e-14
Identity = 60/131 (45.80%), Postives = 81/131 (61.83%), Query Frame = 0
Query:   10 APGQG-APIGQRMEQHEDIG-VSIG--SGSNPGGDYAPLEGQWKDGLCECWNQWSPSCLLSFFVSCVALAMLSKRTGVLPYWCVLIGMIGCGLIAIILSGFAGILIYVYGFTAFLITFLILRRVRQRYSLP 137
            AP  G AP+ Q ME   + G VS G  +GS P  +Y P+EGQWKD    C++Q +P+CL + FV C+ALAMLSKR G  PY  +L G+    L A +L    GIL++ Y    F+ITF +L  VR +++LP
Sbjct:   11 APMMGTAPVPQTMEGGMEAGRVSDGTQTGSLP-SEYRPMEGQWKDHCFACFSQMNPTCLTACFVPCLALAMLSKRMGYAPYKGILYGL----LAAFVLGWLLGILVF-YSLAVFVITFQLLLLVRAKFNLP 135          
BLAST of NO24G00140 vs. NCBI_GenBank
Match: XP_009843589.1 (hypothetical protein H257_16748 [Aphanomyces astaci] >ETV66948.1 hypothetical protein H257_16748 [Aphanomyces astaci])

HSP 1 Score: 66.2 bits (160), Expect = 1.300e-7
Identity = 42/133 (31.58%), Postives = 65/133 (48.87%), Query Frame = 0
Query:   44 LEGQWKDGLCECWNQWSPSCLLSFFVSCVALAMLSKRTGVLPYWCVLIGMIGCGLIAIILSGFAGILIYVYGFTAFLITFLILRRVRQRYSLPSYFGGQGDKHDCKAVFADCLASCCCTPCVISQLLRHTFNY 177
            L GQWK GL  C +Q  P+CL +    CV+LA +  R GV  +  +L  ++ C    ++ +GF G+LI++Y        F +  + R    +P             +  ADC A+ CC  CV++QL  H  +Y
Sbjct:   32 LTGQWKAGLFSCCDQLIPNCLCAXXXPCVSLAQIVARLGVGDF--LLTAIVAC---LLMFTGFGGLLIFLY-------VFYLRYKFRTMLQIPG------------SACADCCAALCCNCCVLAQLATHADSY 140          
The following BLAST results are available for this feature:
BLAST of NO24G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM20303.11.100e-1445.80Uncharacterized protein family Cys-rich, partial [... [more]
XP_009843589.11.300e-731.58hypothetical protein H257_16748 [Aphanomyces astac... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR030ncniR030Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR123ngnoR123Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR114ngnoR114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00140.1NO24G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|597917gene_7241Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101531g2gene10108Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00140.1NO24G00140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00140 ID=NO24G00140|Name=NO24G00140|organism=Nannochloropsis oceanica|type=gene|length=1459bp
CTCCTTCAAGCCCGTAAGGCGTGATATTTTCAAATTTTATGTGATGATCA
CATGGTGATTTGGTGATGGGTGTACACCACGTCGTCAAGGCGCCTATCTC
TGTAACATGCCATGACGGACAACACCACCAACGCACATAACACCGTCCTC
TTTTTTAAGTGTCAAGCGCGGGAGACGCTCCCAAGACAGGTGGTGTTGTC
CACCTGCCTTTTCGCGCCTCCCTCCAAGACGGACGTGTGTGTGCTCACTC
ACATGGCCTACCTTTATGACATCGTATTCTACCAACACATAATACTCCCA
ACATGAACACATAGGAACAACGCTCGCAACGTATCTCCATCATGTCGTCC
TATGACTCTTCCGACTACGCCCCGGGCCAAGGCGCCCCGATTGGCCAACG
AATGGAGCAACACGAAGACATTGGCGTGTCCATCGGAAGTGgtaagacaa
aagggaggaataatatgccgcacaagcaagatgcatgtggtagtgatcgt
aacggtgttggtagtgctgctgctgctgcagttaattctgcctgttctgc
ttcgtcgtccacacgtaaatttaaaactagaaaggacccatgctcactcc
cgcctttcccacccgctctacccagGATCCAACCCGGGCGGCGACTACGC
CCCTCTTGAAGGCCAATGGAAGGACGGACTTTGCGAATGTTGGAACCAGT
GGTCCCCGTCCTGCCTCCTCTCGTTCTTCGTCTCCTGTGTCGCCTTAGCC
ATGCTGTCCAAACGGACGGGGGTCCTGCCTTATTGgtaagaataaaaagg
agggtagggatgacgaaagggttaaggaagggagggagggatgttaatgc
actgctttgattcatgctaggactctcaccctggtgattcttcattcatc
actcatcatatatatatatatatatgtaaacatattaaatgttccgcctc
ccatagGTGTGTCCTAATCGGCATGATTGGCTGCGGTCTTATCGCCATTA
TCCTCTCGGGCTTTGCGGGCATCTTGATCTATGTCTACGGCTTCACGGCC
TTCCTCATCACTTTCCTCATCCTCCGCCGCGTCCGACAGCGATACTCGCT
ACCCTCCTACTTCGGTGGTCAGGGCGACAAGCACGAgtacgtccctccct
ccctccttctctttcaccctgctcaccccttcgtccttccccctccattg
agcttcttcatgttgactttcatttttctgataatcttgccttctcctcc
ctccctccctccctccctccctccctccctccctccctcccctcaaagCT
GCAAGGCTGTCTTCGCGGACTGCCTCGCCTCCTGCTGCTGCACGCCCTGT
GTCATCTCACAGCTCCTTCGACATACATTTAATTACAAGCGATCGTGCGA
CGGGTGTCAGTGTGCCGGAAGTAGGATCCAGACTCTGGTCTAAGCAATGA
AGCCCTCCT
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protein sequence of NO24G00140.1

>NO24G00140.1-protein ID=NO24G00140.1-protein|Name=NO24G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MSSYDSSDYAPGQGAPIGQRMEQHEDIGVSIGSGSNPGGDYAPLEGQWKD
GLCECWNQWSPSCLLSFFVSCVALAMLSKRTGVLPYWCVLIGMIGCGLIA
IILSGFAGILIYVYGFTAFLITFLILRRVRQRYSLPSYFGGQGDKHDCKA
VFADCLASCCCTPCVISQLLRHTFNYKRSCDGCQCAGSRIQTLV*
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Synonyms
Publications