NO24G00070, NO24G00070 (gene) Nannochloropsis oceanica

Overview
NameNO24G00070
Unique NameNO24G00070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4192
Alignment locationchr24:19793..23984 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:19793..23984 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO24G00070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR013ncniR013Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR114ngnoR114Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO24G00070.1NO24G00070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|616984gene_12214Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO24G00070.1NO24G00070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO24G00070 ID=NO24G00070|Name=NO24G00070|organism=Nannochloropsis oceanica|type=gene|length=4192bp
ATGGCACCACTCGTCTCGTTCTCTCCCTCCCCGTCCTCCTCCCCCCTTCG
GCCCCCGATCCCTCCCCCCAGCTCCACCTGCTCCTCACTCCGGCCGTTTG
AGTGCAAGCTGGAGCAGGAGGGGCTGGACGAAGAGGTGGTGATGATGCTG
CACACACGTCAATTCGCGAGACCAAATGCAGCTAAAAAGGACAACGCAGA
GAGGGAGGGATCAGGGGCCAAAGGGGGCGAGCGATCAGAGGCCGAAGGCG
GGGAGGAGGACGAGGAGGGAGAGGATGAGGCGAGAGGTGCCACACCCTTG
GCTCGTCCTCTCCCTCCCCGTCCTCTTACGATGGGCCCAGTGAAGTCCTT
TGTTGTGTTGGgtaagcagaatatgcacatgtcgcttatcgtccctcatg
cacagcgctagcgtcctgtatagcgccgccgccgcattgcccggaaggcc
gccgcattgcccggaagaccttagatggcgcaagcggcaagaaccggtag
tgggagcatatttccttgggagcttaggcttggacgtatcgatgttggac
actacgcatcgaagtcaccctcctgccttagcttattgcatgagacgtgg
taatttacttatggttgtcaccataggcacagaaccacgctctacgagga
agtgtgagatgtccagtctgtcagggtaatgatggattggagatgagata
tgcccttgttgtcaaggctccacactacatgctctgcgccatcgataatg
accacgaccaccaacaacatcaacataaacacaatcatacaggaaagagg
acagggaggccgcatcgcgtacatggcagcgggaggcaggccacgaggca
gaccaacctcctcacccctccccctcctcttcctgctcctgctcctcccc
cttgccccctctttcctcctcgtccatcacactgctttgccgtgttcccc
ctctgttcttgtctcatcgtcccttttatcgtcagCCTTGTCCTCCGCGC
GAGAATGGGACCATATAGACGCCTATGGGGAGATTTTGCGGCGCTGTCAA
GACGAGGAGAGGGTCGTTCAGCGGCTCGGGGCCCTAAGCAGgtaagcaag
caagaaagggaagggaaggggagaaagtagaatcgggcaagttcggagtg
tgacatcgttaacaagtaccctgcttgtgccgctccgacaagGCTGGCCT
ACCTCTCCGAAAAGCAACGGGGTCTGCACCTCGCCCTGCACAAGGACAGG
CGGTACCGGCGTCTCGTGTCTAGTCTGTGGGAGGAACCAGCGCTCAACGC
TTTAATAGAAACGgtgaggagggagggagggagggagggtagcgtccatt
ccatgcttcaacgaatgttatgtttgtttacatctgtccccggacacgca
accgtagGACCCCTCCCTCCTCCTCCTCCTCCCCCTCCTCCTCTACACCC
TCGTCCACCCTCCCTCGCTCCTTCCTGTCGATGCTCTCCTTAACTGGTGT
ACCTGCATCCCCTCCTTGCCGGCCTCCCTTGCCACCCCTCCCTCCCTCTT
ATCCGCGCTGGCCTTCCTCTTCCCCTCCCTCCCTCCTTCCCTCCCTCCCG
CTGTCTCCCCTGCCCTCTCCCTCCTCCTCTCCCGGGCCTCTTTCCCTCTC
ATATCGCTCGCCGAGTGGACCCTCCTCCTCGAAGGAAGCACTTCCCTTCT
TCCCTCACTCCCTCTTTCCCTGCCTTTCTCCCTCCTCCTCACCCGTCTGG
AAAGAGAGGGAGGCAAGGAAGGAGGAAGGGAGGGAGGACCAGCACGGCTC
CCTCGCTTGTGGGTAGCCATACAAAATGCAGGGTTGCTCGTGGTAGAGGG
TGATGACGCTCCTTCTCCCTCTTCCTCCGCCTCTTCCTCTTTTCCTGCCT
CTCCCTTGTCGCTGCTCGTGGCCCTTGGGAAGGCTGTGGAGGCAGGGGGg
tagggaggtgggtagggagggagggagggagggagggagggagggaagga
agcaccaaagagaacgcgattggcgggagtaaatgcggaagggagggagg
gagggagggagggaatagtcacttttgttgactcgtcgaaatcacctttt
tcgcagGTACGGATCTCGCGAGACGGTCCTCCTCCTCCAAGCCCTCCGTG
CCTCCCTCCCGCCCTCCCTCTTGCCCTCCCTCCCGCCCTCCTTCCCTTCT
TCCCTCCTCCTCCACCTTGCTCGGCACTGCGTGTCCTCTCCCTTTCTGTC
CCACCTCCCCCTGACGGCGCTGGCTGACTTCTTTCATCTCCTCGCCCTCC
TTGATAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGGGCGGAAGAAG
GCCGTGCCCACGGCGACAGTAAAGGTTCTGGGCAAGGCTTTCAGGAAGGG
GATGGAGGAGGGGGAGGACGCAGAGgtgggaaggagggaggaagggaggg
ggaagagcaggcttggagcgagaaaagaagtaaagagtcaagagaacccg
tagtctccgccacactaaccccctccctccctccctccctccctccctcc
ctcagTCCCTCTCTCCCGCCCTCCTCCTTCAAGCCCTGGAGGATATTCTT
CTCCTCTCTTCCTCTTCCGTCCCTTCCCTTCTTCCTTCCCTCATCCGCTC
CCTCCCTCCCTCCCTCCCTTCCTCCGTCCACCCCCGAGTGCTCAACTTGT
GTGTACGCGCTCGCTGCCTGCCCCCTCCCTCCCTCCCTTCCTCCCTCCAC
CGTCTGCTCGTGGAGGACGGAGGGAGGGAAGGAGGGAGGGAGGCTGAGGT
GTGCTACGGTCTTGCCTTCCTCGGTCTTCCTGCGCCGCCTCCATTCTCCC
CAGGAAGGGAGGGAGGGGGGAGGGGGGGGGAGGACGAGGGCCTGCCTGCG
CTGTGTCTGCTGCTCTGGTCGCTGGTGGTGATGGAGGAGGACGAGAGGGA
GGgtaggaaggacgggggatgacgcgcgagatattaaagcgcctggttga
gagggcgagaaggcagggagctgcccctccctccctcccttcctccctcc
ctccctcggcacgacgacagGCCTTGCAGGCAGTGACGGCGCTGCGGGTG
CTGCGGGGGGAGGAAGGGAGAGAGGGAGGGAGGGAGGAAGCGCTGATGCT
GGAGGAGCTACAAAGGTGGCTGGTGGGCGGGGAGGAGgtaaggaagggga
tggaaggaaggagggagggaagaagggagaaagggagggaagttttagag
agagatggaagggaagagagagaaagtgatttgatattatcgatgcatcc
gaacaggagcagacacacctctatttcacacaccatgtggtctcaggcta
gtcctccctccctccctccctccctccctccctcctgacctttttcctcc
tccccccctactgactccccccccacagAACCCCCTCCCCTCCCTCCCTC
CCTCCCTCCCTTCCAACCTTCAACGACAAGTGGGCTCCTTCTTGAGGGAA
ATTATGAAATGCTCTCCAGCCCTGGTCGAAGAGGAGGCAGCGACGGAAGA
AGGGAGGGAGGGAGGATGGGAAAGAGGCAGCTTTATTCGGGAGGCCGCGA
GGGGTATTGCGGTCCGGGGGAGGAAGCGGAGGAGGAGGGGCATGAAGGAG
GGAGGGAAGGAGGGAGGGAGGGAGAGGAGGAGGCGTCCCGACTGCTTTCG
CTCTTGGGCTACACACTGGATTTTGTGATTCCTCCCTTGGTGGCAGGAGG
GAGGGAGGGTGGGAGGGCGGGAGAGAGGGAGTCCTTGTCAATTGTGCTGG
ATGTAGACGGTCCGTTTCATTTCTTGGCCTCGGGGGGAGGAGGAGGGGAG
GGAGGGGGGGAGAGGGAAGGGAGAGAGGGCGTTGGGTCCAACCCGGTTGA
AGCATCGGGTGATGAGGCGGTTGTGCAAGGGAGGAGGGGAGGGAGGGAGG
GAGGGAGGGTGTGGGAGGTTTTGTCTCCATCTCCTCTCGGGACTGGGAGG
AGGCAGGAAAGGAGGGGAAAGGGGAGGAGTGCAGGAGGAGGAAGGGAGGA
GGAGGCTGGTGGTGCGGAAGCTGGAGGATGAGGGGATTGACCCCCGGGTG
TACTTTGAATGTTGTAGGAAGGAGGGAGGGGAGAAAAGATGAATGAAGGG
AAATTGAAACCATGAGAGTAAGAATCAAATATGGATGTGTAG
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protein sequence of NO24G00070.1

>NO24G00070.1-protein ID=NO24G00070.1-protein|Name=NO24G00070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=872bp
MAPLVSFSPSPSSSPLRPPIPPPSSTCSSLRPFECKLEQEGLDEEVVMML
HTRQFARPNAAKKDNAEREGSGAKGGERSEAEGGEEDEEGEDEARGATPL
ARPLPPRPLTMGPVKSFVVLALSSAREWDHIDAYGEILRRCQDEERVVQR
LGALSRLAYLSEKQRGLHLALHKDRRYRRLVSSLWEEPALNALIETDPSL
LLLLPLLLYTLVHPPSLLPVDALLNWCTCIPSLPASLATPPSLLSALAFL
FPSLPPSLPPAVSPALSLLLSRASFPLISLAEWTLLLEGSTSLLPSLPLS
LPFSLLLTRLEREGGKEGGREGGPARLPRLWVAIQNAGLLVVEGDDAPSP
SSSASSSFPASPLSLLVALGKAVEAGGYGSRETVLLLQALRASLPPSLLP
SLPPSFPSSLLLHLARHCVSSPFLSHLPLTALADFFHLLALLDRREGGRE
GGRKGRKKAVPTATVKVLGKAFRKGMEEGEDAESLSPALLLQALEDILLL
SSSSVPSLLPSLIRSLPPSLPSSVHPRVLNLCVRARCLPPPSLPSSLHRL
LVEDGGREGGREAEVCYGLAFLGLPAPPPFSPGREGGGRGGEDEGLPALC
LLLWSLVVMEEDEREGLAGSDGAAGAAGGGRERGREGGSADAGGATKVAG
GRGGEPPPLPPSLPPFQPSTTSGLLLEGNYEMLSSPGRRGGSDGRREGGR
MGKRQLYSGGREGYCGPGEEAEEEGHEGGREGGREGEEEASRLLSLLGYT
LDFVIPPLVAGGREGGRAGERESLSIVLDVDGPFHFLASGGGGGEGGGER
EGREGVGSNPVEASGDEAVVQGRRGGREGGRVWEVLSPSPLGTGRRQERR
GKGRSAGGGREEEAGGAEAGG*
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Synonyms
Publications