NO23G01900, NO23G01900 (gene) Nannochloropsis oceanica

Overview
NameNO23G01900
Unique NameNO23G01900
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3680
Alignment locationchr23:685893..689572 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:685893..689572 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO23G01900 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL035nonsL035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR062ncniR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR126ngnoR126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK007514NSK007514Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01900.1NO23G01900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|307091gene_10002Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01900.1NO23G01900.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01900 ID=NO23G01900|Name=NO23G01900|organism=Nannochloropsis oceanica|type=gene|length=3680bp
CAGTAGGGCGGGCTGAAGCGAACATTACATGGGGCTGGAACGTCAGCGGG
TGGCGCAACACTCTCCTTGTCATCCTACAAGTCGCCGCTCATTAAAGCCA
GCACCCCATCGTCTACCATATCGGTCACCTTCACGGGGCCGACTTCGTGG
TTGGTGCCGCGCCCAGCATTATCATATGATTATAGCCTGGCGGCTTCTTT
CGACTCGGAGCACGCACGGAAGATAATGAAATTACGGGCGTACGAGCTTT
ACATTGGCTGCCAATGTACATCACTTTCTTTTTGAACAATCTTCTTCCAT
TCAGCCGACGCCCACTATGTGATGTACGTGCTCGCTTTGAGAGGGCAGTT
GAGAGAGATAGAGGGAGGAGGGAGGAGGACATTGTACCAGAATTGTTGTC
CTCAGTTGATTGGAGACGGAATCGTTGCATCGGTGCCGATAAAAGCGTGA
GACGAGATCTGAGAGTGAGAGCGAGAGCGTGTGATTGCTGTTTCTTTCAA
CATATGGAAGCAGGGCGCTTTCACAGCCACTTCCACATACCAACTTGCGC
GCACCCACAACAAAAAGGTCTTGACATGAAAAGATACTATATACACTAGG
AGGAAGAGAATCTGGGAAAGAAGGAGCGATTGCACATGTTAGAAAGGAAA
CATGACCAAGCAAAGAAGACCTGCGACGTCACACATGAAGCAGCAGTCCT
AAACTCTAAATTTAATGGAATGCAATTTCGATGAATTTCTATTTCATTAC
TCTGGGCATAAGTGACATATTAATGAGGGAAAACGACAAGGACTATTCCA
ACATTTTCGCCCCTATTGAGAGAAGGTCGACGATGCGGTGCGCGAGGACA
TTTGGCCCAGCTGCCGGAGCAAACCCGGTTCAAGCACACTTCGCATGCCT
TTGAGGGAGTTGTAGAATTAATCAGACCTTTCGAATGGTGGTAATACTAA
ATGGACAAAGAAGCCACATTCGTACTTGAAAGAACTTATATCCGTCGTAC
AAAAAGCTCCACGAGTCAACAAGGAAAAGGCTTAACCACGGGAGGACCGG
GGAATATAACTCGAATCAACAAGGAAAAGGCTCAACCACGAAGAACCGGG
GTCAGTAGATCGACTCAACCGCGGCAGGATATGCGGACACTCTTTGTGTA
GCCTCCCCGCTGACATCCTCTTTAATCCCCCTCACCCTTCTCCTCCTGGC
CCTGTGTAGGCCGTCCGGGGACTTTGCCAGATGAAAAACCTGTCAAAGTC
GGTGGTAAAACTCGGACAAGGAATAAGGGGTGAATAGACAACACTATTGT
TGGAAGGATCCCCCTCGTATGCAAGTCCTAGAGGACGCATGCGATAGTGT
AGGAACTGCCAACTATCGACACGGGTCAATCGTCAATCATCAGCATCATC
AATCATCAGCAATCATCTATCATCACCGAGCCATCTGCTTTCTTGATTTT
ATTGACAGTCGCAGACATTGTCGGACCTTGCAGACTCTGATTTCTTGCAT
GTTGCGGACACAATGATTGTGGCATATTTAGCTGTGTGTTTGAGTGCGGC
AGTCGCAGAGTGTTGTGGAAAAAAATCCTCTAGCAGCTCAAGTTTCCGCC
TGCCCGTTGCACTATAGTCTGAACGAGTTCACCACATAGTTATCCACTCG
TGGCTGGTGGGAAAGCCCATGAGCCGTGCTGTGTGTCTTGACACTTTGCT
GGACCTCATTTAAAGCACTCTTTGGTACTTCGAAGATATCAGTGCCAATA
CGATCATACGAGATTACACGAGGTTGGCATTTTCAGCCTCAAAGAATGCA
GACTCACACCTCTTGCAAGGACAAGAACACGATGGATGGAGCCCCTCGGA
TCCTTGCCGCGTGTCAAGGCTGCTTGCTATAGAAGCCTCTAGCGTATACA
CGCTATGCAAGATATCTGTACACACAAACACTGGTGGTTAGGCATGCGCT
GCTTGCCCTAGACCGTCATTACTTACCTTCCCATTCTCGCCCCCGACAAA
AATCCCACAGATCTTGTACGAACAACATCACACCATACCAAATCAACAAG
GCAGCAAATGATCCGCATCATCACCCGCGTCTGCATGGCCACTGCAGCAG
TTCTTCTTCTCGCAGTTCCCATGGAGGCCAACTACCTGCGTCGTGTACAG
ATGGTCGCCACCGAGGgtaggttactcagtttggggtggaggagtatgac
gaggtccagttgttctgttgttcccagtcgggccgagtcaggtgcaaata
agcgctcgatcggtgtaagccagcctcacacacttacatcgcaccctgca
ctcacgcacacctataaatcacagAGGCCGTGGAAGGCGACAAAGCTCCC
CTTTCCCACGGCTGGGCGTACGGTGGTCCTTCGGGCTCCCGCAAGGAGGT
GATCGAGTCTGCTGCTGCGCCTGAGGAGGGCGACAAGGCTCCTCTTTCCC
ACGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGGTGATCGAG
TCTGCTGCTGCGCCTGAGGAGGGCGACAAGGCTCCTCTTTCCCACGGCTG
GGCGTACGGTGGTGCTTCGGGCTCCCGCAAGGAGGTGATCGAGTCTGCTG
CTGCGCCTGAGGAGGGCGACAAGGCTCCTCTTTCCCACGGCTGGGCGTAC
GGTGGTGCTTCGGGCTCCCGCAAGGAGGTGATCGAGTCTGCGGCTGCGCC
TGAGGAGGGCGACAAGGCTCCTCTTTCCCACGGCTGGGCGTACGGTGGTG
CTTCGGGCTCCCGCAAGGAGGTGATCGAGTCTGCTGCTGCGCCTGAGGAG
GGCGACAAGGCTCCTCTTTCCCACGGCTGGGCGTACGGTGGTGCTTCGGG
CTCCCGCAAGGAGGTGATCGAGTCTGCGGCTGCGCCTGAGGAGGGCGACA
AGGCTCCTCTTTCCCGCGGCTGGGCGTACGGTGGTGCTTCGGGCTCCCGC
AAGGAGGAGGTGGGCACAGTCGCCTTTCCTTAATTTGTTGTGAAAAGATG
AAGGAAGAATTGGAGGATAGATGGAGAAGTAGAGAGAAGGGGATGACAGC
GTATGTGCCCTTGCACCTATCATGATAGTAACCGAGGCGCGAAAGCTGAA
ACATGGTGCGGAGGAAGAGAAGGATAACGGACTGACAAGTGGCCCACAAT
CAAAACGATGGCGACCGCGGAAAGCGAGAGAGGAAGACAATCAGGGGAAG
GGGGGGAAAGGGGCAGGAGCAGGTCGAGAGACGTGATGGGGAAGAAGGAT
AAGGGTAGGGGGTAATGGTATTTGCGTACCCTCCCTTTTCTCCCTCCCGC
TTCCTCGTGTCTTCTCGTATGTGAGGCGTGTACATAGATAACATTTACTT
TTCTCTCCGTGGCGAGCGAGACAGACATAATCGAAGCATTTGAGATACTT
CTGTGAGCGTAAAAGAAAGAGAGCCGGGCAGTAGACGCGAGAAGATAAGG
ACGACAAGGTGCTTGTTGAGAGCACGGGATGTGTATGCTCGTGAGCAGCA
TCAGCAACAACCACAAAAAAACATGGAAGGCCCTTTCGCCCCCGTACGGA
AATGCTGGGCCTGCGGGCGGCCGGGCGGCGGTGGCATGTGATTAACCGAG
GAATTTCTAACATAATAAGGGATGAATTGAACAAAGAATGACGGGTAATT
AGTTGTCTTACAGACACATATTGGCCTGCT
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protein sequence of NO23G01900.1

>NO23G01900.1-protein ID=NO23G01900.1-protein|Name=NO23G01900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MIRIITRVCMATAAVLLLAVPMEANYLRRVQMVATEEAVEGDKAPLSHGW
AYGGPSGSRKEVIESAAAPEEGDKAPLSHGWAYGGASGSRKEVIESAAAP
EEGDKAPLSHGWAYGGASGSRKEVIESAAAPEEGDKAPLSHGWAYGGASG
SRKEVIESAAAPEEGDKAPLSHGWAYGGASGSRKEVIESAAAPEEGDKAP
LSHGWAYGGASGSRKEVIESAAAPEEGDKAPLSRGWAYGGASGSRKEEVG
TVAFP*
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Synonyms
Publications