NO23G01720, NO23G01720 (gene) Nannochloropsis oceanica

Overview
NameNO23G01720
Unique NameNO23G01720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3681
Alignment locationchr23:630078..633758 +

Link to JBrowse

Properties
Property NameValue
DescriptionPab-dependent poly-specific ribonuclease subunit 3
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:630078..633758 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO:0009987cellular process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR011009Kinase-like_dom
IPR000719Prot_kinase_dom
Homology
BLAST of NO23G01720 vs. NCBI_GenBank
Match: XP_005854773.1 (PAB-dependent poly(A)-specific ribonuclease subunit 3 [Nannochloropsis gaditana CCMP526] >EKU21589.1 PAB-dependent poly(A)-specific ribonuclease subunit 3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 601.7 bits (1550), Expect = 3.500e-168
Identity = 378/671 (56.33%), Postives = 436/671 (64.98%), Query Frame = 0
Query:    1 MFPNRDFYPGGQPPPQQQGHPPL-PQNPWH-QQXXXXXQPGRAPSPTEKTLNFGTVGTAVAGNRPPLPPMPAENPSITYMSAASRLPITSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLRSAINAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLSQGGLGYLKSSAAPFNPGAALNKLGVQAAPFVPGXXXXXXXXXXXXMLDKGMTRASSSVXXXXXXXXXXXXXXXXXXXXXXXXXA--FYGEDEGEGVGEDYEEDRQHGGGHHQNYYGDEIFDWSVGASSLPAPPRKTLQRMGVPEQLRQFFLLKDLDKLRALPPDDPRYKEIPPRYHQAYPLDDAHKARGTTGVSGYPSVIYKVLSHDDGNVYALRRYDSVRTNPKIVSSVVENWRRIQHPNIVKLNKAFVQHGNALFFVHEYCPGAQSITHRYVNTARGQP-HQQQRLPEKLLWSFITQLVSALRTVHSAQAACRMLHPNYVLVTTGARLRLGCCGIPDVLESETRKSIAELQTEDLHMLGRLIVILATRSLPTNPQTLSTALSLLSQHYSPDLQALAIQLCSKPGSLSVFDLGTLLSRHVMDELDRQYAAVDDLEGHLSHEYESGRLFRLSIKLAQVTERPEAQDGRDPAWAETGNRYILKLFK 667
            M P R F P G+   Q+Q  P L P+NPW  QQ       G  P+  E+    G  G  V G +   PP P+  P        SR  I++P                                                    VLR A+NA                               S  +Q   G L+S+A  F P AA N+L + A PFVPG XXXXX        D  + R S   XXXXXXXXXXXXXXXXXXXXXXXX    + GE E + +G+       H        YGDEIFDWS G SSLPAPPR TLQRMGVPEQLRQFFLLKDLDK R+LPPDDPRYKEIPP +H AYPLDDA KARGT G  GYPSV YKVLSH+DG VYALRR+DSVR+ PKIV+  +E WRRIQHPNI++L+K F+QHGNALFF+HEY PGAQS+T RYV+++RG    +  RLPEKLLWSF+TQLVSA+R VH+AQAACRMLHPN+VLVTTGARLRLGC G+ DVLESETRK++AELQTEDL MLGRLI+ LATR+LPT PQ+L  AL+ + Q YSP+L AL++QLCSKPG LSVF+L  LLSR+ +DELDRQYAA DDLEGHLSHEYESGRLFRLS+KLAQVT R EA +G+DPAW ETG RYILKLFK
Sbjct:    1 MLPGRAFQPPGREQEQEQSGPSLPPRNPWQLQQQNYESISGHGPATAEQRPPVGLPGVDVGGRQDQPPPTPSAVP--------SRPTISTP---------------------GLSLSSSYSFQGQQAQHGQSQQQSEDRQPPSVLRYAVNA-----------PHFVPKASTESPALGANASPSLPAQASFGNLRSTAMSFEPSAASNRLDMGAVPFVPGGXXXXXGRSRSSAGDLEILRVSXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLPYGGEAEEDDLGDSLVNPLHH--------YGDEIFDWSFGGSSLPAPPRMTLQRMGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPPGFHHAYPLDDAQKARGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRIQHPNIIQLSKVFIQHGNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVTTGARLRLGCAGVVDVLESETRKTLAELQTEDLAMLGRLILTLATRTLPT-PQSLGAALAQVRQQYSPELHALSLQLCSKPGLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFK 622          
BLAST of NO23G01720 vs. NCBI_GenBank
Match: EWM27769.1 (pab-dependent poly -specific ribonuclease subunit 3, partial [Nannochloropsis gaditana])

HSP 1 Score: 601.7 bits (1550), Expect = 3.500e-168
Identity = 378/671 (56.33%), Postives = 436/671 (64.98%), Query Frame = 0
Query:    1 MFPNRDFYPGGQPPPQQQGHPPL-PQNPWH-QQXXXXXQPGRAPSPTEKTLNFGTVGTAVAGNRPPLPPMPAENPSITYMSAASRLPITSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLRSAINAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLSQGGLGYLKSSAAPFNPGAALNKLGVQAAPFVPGXXXXXXXXXXXXMLDKGMTRASSSVXXXXXXXXXXXXXXXXXXXXXXXXXA--FYGEDEGEGVGEDYEEDRQHGGGHHQNYYGDEIFDWSVGASSLPAPPRKTLQRMGVPEQLRQFFLLKDLDKLRALPPDDPRYKEIPPRYHQAYPLDDAHKARGTTGVSGYPSVIYKVLSHDDGNVYALRRYDSVRTNPKIVSSVVENWRRIQHPNIVKLNKAFVQHGNALFFVHEYCPGAQSITHRYVNTARGQP-HQQQRLPEKLLWSFITQLVSALRTVHSAQAACRMLHPNYVLVTTGARLRLGCCGIPDVLESETRKSIAELQTEDLHMLGRLIVILATRSLPTNPQTLSTALSLLSQHYSPDLQALAIQLCSKPGSLSVFDLGTLLSRHVMDELDRQYAAVDDLEGHLSHEYESGRLFRLSIKLAQVTERPEAQDGRDPAWAETGNRYILKLFK 667
            M P R F P G+   Q+Q  P L P+NPW  QQ       G  P+  E+    G  G  V G +   PP P+  P        SR  I++P                                                    VLR A+NA                               S  +Q   G L+S+A  F P AA N+L + A PFVPG XXXXX        D  + R S   XXXXXXXXXXXXXXXXXXXXXXXX    + GE E + +G+       H        YGDEIFDWS G SSLPAPPR TLQRMGVPEQLRQFFLLKDLDK R+LPPDDPRYKEIPP +H AYPLDDA KARGT G  GYPSV YKVLSH+DG VYALRR+DSVR+ PKIV+  +E WRRIQHPNI++L+K F+QHGNALFF+HEY PGAQS+T RYV+++RG    +  RLPEKLLWSF+TQLVSA+R VH+AQAACRMLHPN+VLVTTGARLRLGC G+ DVLESETRK++AELQTEDL MLGRLI+ LATR+LPT PQ+L  AL+ + Q YSP+L AL++QLCSKPG LSVF+L  LLSR+ +DELDRQYAA DDLEGHLSHEYESGRLFRLS+KLAQVT R EA +G+DPAW ETG RYILKLFK
Sbjct:    1 MLPGRAFQPPGREQEQEQSGPSLPPRNPWQLQQQNYESISGHGPATAEQRPPVGLPGVDVGGRQDQPPPTPSAVP--------SRPTISTP---------------------GLSLSSSYSFQGQQAQHGQSQQQSEDRQPPSVLRYAVNA-----------PHFVPKASTESPALGANASPSLPAQASFGNLRSTAMSFEPSAASNRLDMGAVPFVPGGXXXXXGRSRSSAGDLEILRVSXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLPYGGEAEEDDLGDSLVNPLHH--------YGDEIFDWSFGGSSLPAPPRMTLQRMGVPEQLRQFFLLKDLDKGRSLPPDDPRYKEIPPGFHHAYPLDDAQKARGTAGAFGYPSVTYKVLSHEDGRVYALRRFDSVRSTPKIVAGALETWRRIQHPNIIQLSKVFIQHGNALFFLHEYHPGAQSVTQRYVDSSRGHSGARPSRLPEKLLWSFVTQLVSAIRAVHAAQAACRMLHPNHVLVTTGARLRLGCAGVVDVLESETRKTLAELQTEDLAMLGRLILTLATRTLPT-PQSLGAALAQVRQQYSPELHALSLQLCSKPGLLSVFELVPLLSRYALDELDRQYAAADDLEGHLSHEYESGRLFRLSLKLAQVTGRAEAMEGQDPAWNETGTRYILKLFK 622          
BLAST of NO23G01720 vs. NCBI_GenBank
Match: CBN77938.1 (Poly(A) ribonuclease subunit [Ectocarpus siliculosus])

HSP 1 Score: 380.9 bits (977), Expect = 9.700e-102
Identity = 203/433 (46.88%), Postives = 280/433 (64.67%), Query Frame = 0
Query:  299 DEIFDWSVGASSLPAPPRKTLQRMGVPEQLRQFFLLKDLDKLRALPPDDPRYKEIPPRYHQAYPLDDAHKARGTTGVSGYPSVIYKVLSHDDGNVYALRRYDSVRTNPKIVSSVVENWRRI-QHPNIVKLNKAFVQHGNALFFVHEYCPGAQSITHRYVNTARGQPHQQQRLPEKLLWSFITQLVSALRTVHSAQAACRMLHPNYVL-VTTGARLRLGCCGIPDVLESETRKSIAELQTEDLHMLGRLIVILATRSLPTNPQTLSTALSLLSQHYSPDLQALAIQLCSKPGSLSVFDLGTLLSRHVMDELDRQYAAVDDLEGHLSHEYESGRLFRLSIKLAQVTERPEAQDGRDPAWAETGNRYILKLFKDYVYHQVDEEGQPVLDLGHIVHSLNRLDSGDPEKILLMSRDAHTMIIVSFEDIKRCLEAAWVE 730
            +E F W+ G+++L AP R+T+    VPEQL   F    L  LR LPPDD R KEIPP+++ A+PLDDA K RGT G  GYPS  YKV+ H +G  +ALRR+D+ RT  KIV+   E W  + +HP I +  +AF+ H NALFFV ++ PGA++++ R++    G       L E LLW  + QL+ ALR  H+A AA R +HP+ VL    G R+R+   G  DVLE ETRK ++ELQ +D+  LG LI+ LA R  P    +   +L+  +QHY+P+L  LA  L SK    SVF++    + H MD ++    A   L+GHL+ EY++GRL RL +KL  + ERP+   G    W+ETG RYILKLF+DY++HQVD +G+PV+D GH+  SL+ LD+G+ EKILL SRD  ++++VSF D+KRCLE A+ E
Sbjct:  132 EEGFLWAAGSAALAAPQRRTMHSTAVPEQLWAEFQNHSLSVLRQLPPDDERLKEIPPQFYAAFPLDDASKTRGTAGSFGYPSETYKVIQHHNGQAFALRRFDTARTTAKIVAMGTEIWLSMPEHPAITRPREAFL-HRNALFFVSDFHPGAETLSERFIQRQGG------LLSEGLLWRLVCQLLGALRATHAAGAALRNVHPSRVLYCLVGDRVRVNWVGCLDVLEYETRKQVSELQRQDMVDLGSLILALACRH-PVTVASRGESLAFTAQHYTPELHNLAASLVSKKPP-SVFEVCVATAHHTMDAMENTLMANGALQGHLASEYDNGRLLRLLLKLGTLNERPD--QGGVGEWSETGERYILKLFRDYLFHQVDADGEPVMDFGHVYQSLSLLDAGNEEKILLTSRDRRSLLVVSFADVKRCLEEAFAE 553          
BLAST of NO23G01720 vs. NCBI_GenBank
Match: XP_003293447.1 (hypothetical protein DICPUDRAFT_42055 [Dictyostelium purpureum] >EGC30020.1 hypothetical protein DICPUDRAFT_42055 [Dictyostelium purpureum])

HSP 1 Score: 326.2 bits (835), Expect = 2.800e-85
Identity = 176/425 (41.41%), Postives = 264/425 (62.12%), Query Frame = 0
Query:  316 RKTLQRMGVPEQLRQFFLLKDLDKLRALPPDDPRYKEIPP---RYHQAYPLDDAHKARGTTGVSGYPSVIYKVLSHDDGNVYALRRYDSVRTNPKIVSSVVENWRRIQHPNIVKLNKAFVQH---GNALFFVHEYCPGAQSITHRYVNTARGQPHQQ--QRLPEKLLWSFITQLVSALRTVHSAQAACRMLHPNYVLVTTGARLRLGCCGIPDVLESETRKSIAELQTEDLHMLGRLIVILATRSLPT-NPQTLSTALSLLSQHYSPDLQALAIQLCSKP--GSLSVFDLGTLLSRHVMDELDRQYAAVDDLEGHLSHEYESGRLFRLSIKLAQVTERPEAQDGRDPAWAETGNRYILKLFKDYVYHQVDEEGQPVLDLGHIVHSLNRLDSGDPEKILLMSRDAHTMIIVSFEDIKRCLEAAWVE 730
            R+ +    + E L+Q  + +       L P+DPR K IPP   +YH  YPLD          + GY + +YK +   DG  YA+RR +  R + +      E+WR +QHPNIV L + FV      N LFF ++Y PG+++I  ++++    QP+Q   Q + E +LWSFITQLVSAL+T+HS    CR++HP+ +L+T   R+RL   GI DV+  ++ +++A+ Q EDL +LGRLI+ LA RS  +   Q LS ++  +S  YS DL  L + L +KP     ++ ++ T++S  ++ E +  +   DDLE  L  EYE+GRLFRL  KL  + ERP      DP W+ETG+RY++KLF+DY++HQV ++G PVLD  H+V +LN+LD G  EKILLMSRD  ++++VS++D+K+C+E A+ E
Sbjct:   21 RRNMGSFFMSESLKQDIVHQKQLLYMTLDPNDPRIKNIPPMLNKYHSLYPLDQDGAKENQGKMFGYVTSVYKAICTQDGLPYAIRRIEGFRLSSEYALQAAESWRNLQHPNIVSLKEIFVSKEFGDNTLFFTYDYFPGSETIESKFLS----QPNQTSFQPISESVLWSFITQLVSALKTIHSLGLVCRVIHPSKILLTGKNRIRLNGVGIFDVVNYDSPRNLAQFQHEDLLLLGRLILTLACRSAASITAQNLSNSIEYVSNTYSKDLYNLIVYLLTKPVINLPNIDEVVTMISGRLLQENNYLHTYTDDLETELGKEYENGRLFRLVTKLGFINERPLYD--MDPRWSETGDRYLIKLFRDYIFHQVYDDGTPVLDFYHVVETLNKLDCGVDEKILLMSRDEQSLLVVSYKDLKKCIELAFSE 439          
BLAST of NO23G01720 vs. NCBI_GenBank
Match: XP_008619189.1 (hypothetical protein SDRG_14812 [Saprolegnia diclina VS20] >EQC27370.1 hypothetical protein SDRG_14812 [Saprolegnia diclina VS20])

HSP 1 Score: 319.7 bits (818), Expect = 2.700e-83
Identity = 180/452 (39.82%), Postives = 263/452 (58.19%), Query Frame = 0
Query:  304 WSVGASSLPAPP----RKTLQRMGVPEQLRQFFLLKDLDKLRALPPDDPRYKEIPPRYHQAYPLD--DAHKARGTTGVSGYPSVIYKVLSHDDGNVYALRRYDSVRTNPKIVSSVVENWRRIQHPNIVKLNKAFVQHGNALFFVHEYCPGAQSITHRYVNTARGQPHQQQRLPEKLLWSFITQLVSALRTVHSAQAACRMLHPNYVLVTTGARLRLGCCGIPDVLESETRKS--IAELQTEDLHMLGRLIVILATRSLPTNPQTLSTALSLLSQHYSPDLQALAIQLCSKPGSLSVFDLGTLLSRHVMDELDRQYAAVDDLEGHLSHEYESGRLFRLSIKLAQVTERPEAQDGRDPAWAETGNRYILKLFKDYVYHQVDEEGQPVLDLGHIVHSLNRLDSGDPEKILLMSRDAHTMIIVSFEDIKRCLEAAWVEFCELA-NTNPSIQELAHP 747
            ++  AS +P+ P    R++L  M +   +R+    +  D LR + P D RYKEIP ++H  +PLD  D    R   G  GYPS  YKV+S  DG  YALRR ++VRT P I    V+ W+++ H N+V L++AFV HG ALFF+ EY P A S+  +Y  +            E  LWS +TQ+  ALR +H    AC+ +    +LVT   R+R+   G+ DVLE +T KS  +  LQ +DL  LG++++ L  R   +    +S  L+  +  +S +L A+ ++  +   + S  DL  +L      ELD QY+  D+LE  LS EY++GR+  L +KL  + ERP+     D +WAETG+RY+LKLF+DYV+HQVDEE +PVLD GHIV +LN+LD    EKILL SRD  ++++ S+ ++ +C++ A+ E    A    PS   LA P
Sbjct:  129 YAASASVIPSSPIVTTRRSLASMALAPTVRRQLDAEHEDMLRQVHPSDERYKEIPSQFHCMWPLDVQDDALHRNVAGSFGYPSHCYKVISETDGRTYALRRVENVRTTPGITQQAVDKWKKVVHANVVPLHRAFVSHG-ALFFLSEYYPTATSLHAKYFGS-----QASSVASEAFLWSLLTQVTGALRAIHRHDMACQAIALRRLLVTGHNRVRISGTGVLDVLEYDTSKSKRVEALQQDDLVNLGKVVLSLGVRQEMSATSNVSDLLAQFATTFSDELTAV-VRGLTLQSTTSANDLALMLFDRTQAELDTQYSLADELEAQLSSEYQNGRMLLLMLKLGLINERPDF--NLDSSWAETGDRYLLKLFRDYVFHQVDEENRPVLDFGHIVDALNKLDGASAEKILLSSRDGQSVLVASYAEVHKCVKQAFSELVAAAQRQRPSTTPLAKP 571          
BLAST of NO23G01720 vs. NCBI_GenBank
Match: P0CD65.1 (RecName: Full=PAN2-PAN3 deadenylation complex subunit pan3; AltName: Full=PAB1P-dependent poly(A)-specific ribonuclease; AltName: Full=Poly(A)-nuclease deadenylation complex subunit 3; Short=PAN deadenylation complex subunit 3)

HSP 1 Score: 319.7 bits (818), Expect = 2.700e-83
Identity = 173/426 (40.61%), Postives = 262/426 (61.50%), Query Frame = 0
Query:  314 PPRKTLQRMGVPEQLRQFFLLKDLDKLRALPPDDPRYKEIPP---RYHQAYPLDDAHKARGTTGVSGYPSVIYKVLSHDDGNVYALRRYDSVRTNPKIVSSVVENWRRIQHPNIVKLNKAFVQ----HGNALFFVHEYCPGAQSITHRYVNTARGQPHQQQRLPEKLLWSFITQLVSALRTVHSAQAACRMLHPNYVLVTTGARLRLGCCGIPDVLESETRKSIAELQTEDLHMLGRLIVILATRSLPTNPQT-LSTALSLLSQHYSPDLQALAIQLCSKP--GSLSVFDLGTLLSRHVMDELDRQYAAVDDLEGHLSHEYESGRLFRLSIKLAQVTERPEAQDGRDPAWAETGNRYILKLFKDYVYHQVDEEGQPVLDLGHIVHSLNRLDSGDPEKILLMSRDAHTMIIVSFEDIKRCLEAAWVE 730
            P R+ +    + E L+Q  L +       L P+DPR K IPP   +YH  YPLD          + GY + +YK +S  DG  YA+RR +  R + +      E WR IQHPNIV L + FV       ++LFF +E+ PG++++  +Y++ + G P     L E +LWSFI Q+ SAL+T+HSA   CR++HP+ +L+T   R+R+   GI DV+  +T + +A+ Q EDL + GRLI+ LA RS  +   T LS ++  +S  YS +L  L + L +KP     ++ ++  ++S  ++ E +  +   DDLE  LS EYE+GRLFRL  KL  + ERP      DP W+ETG+RY++KLF+DY++HQV ++G PVLD  H+V +LN+LD G  EKILLMSRD  ++++VS++D+K+C+++A+ E
Sbjct:  321 PGRRNIGSFFMSESLKQDILNQKSLLYLTLDPNDPRIKNIPPMLNKYHSLYPLDHDASRENQGKMFGYITSVYKAISTLDGLPYAIRRVEGFRLSSEYALQAAETWRNIQHPNIVSLKEIFVSKEFGDNSSLFFTYEFFPGSETLESKYLSQS-GNP-----LSESVLWSFICQITSALKTIHSAGLVCRVIHPSKILLTGKNRIRMNGVGIFDVVNFDTPRILAQYQHEDLLLFGRLILTLACRSAQSTTTTNLSKSIEYVSNQYSKELYNLIVYLLTKPVINLPNIDEVVLMISGRLLQENNYLHTYTDDLETELSKEYENGRLFRLVTKLGFINERPLYD--MDPRWSETGDRYLIKLFRDYIFHQVYDDGTPVLDFYHVVETLNKLDCGVDEKILLMSRDEQSLLVVSYKDLKKCIDSAFSE 738          
BLAST of NO23G01720 vs. NCBI_GenBank
Match: OQS04864.1 (hypothetical protein THRCLA_02937, partial [Thraustotheca clavata])

HSP 1 Score: 319.7 bits (818), Expect = 2.700e-83
Identity = 172/441 (39.00%), Postives = 260/441 (58.96%), Query Frame = 0
Query:  304 WSVGASSLPAPP----RKTLQRMGVPEQLRQFFLLKDLDKLRALPPDDPRYKEIPPRYHQAYPLDDAHKA----RGTTGVSGYPSVIYKVLSHDDGNVYALRRYDSVRTNPKIVSSVVENWRRIQHPNIVKLNKAFVQHGNALFFVHEYCPGAQSITHRYVNTARGQPHQQQRLPEKLLWSFITQLVSALRTVHSAQAACRMLHPNYVLVTTGARLRLGCCGIPDVLESETRKS--IAELQTEDLHMLGRLIVILATRSLPTNPQTLSTALSLLSQHYSPDLQALAIQLCSKPGSLSVFDLGTLLSRHVMDELDRQYAAVDDLEGHLSHEYESGRLFRLSIKLAQVTERPEAQDGRDPAWAETGNRYILKLFKDYVYHQVDEEGQPVLDLGHIVHSLNRLDSGDPEKILLMSRDAHTMIIVSFEDIKRCLEAAWVEFCELA 735
            ++  AS  P+ P    R++L  M +   LR+    +  D LR + P D RYKEIP ++H  +PLD         R   G  GYP+  YKV+S  DG  YALRR ++VRT P I    VE W+++ HPN+V L++AF+ HG ALFF+ EY   AQS+  ++V  +           E  LWS +TQL  ALR +H    AC++++   +L+T+  R+R+   G+ DVLE +T KS  +  LQ ED+  +G++++ +  R   T    +S  L   +Q YS +L  +   L       +V  LG  +  H M+ELD Q +  D+LE  L+ EY++GR+  L +KL  + ERPE     D +W+ETG+RY+LKLF+DYV+HQVDEE +PVLD GHI+ +LN+LD    EKILL SRD +++++ S+ ++ +C++ ++ +    A
Sbjct:   81 YAASASLTPSSPIVTMRRSLASMALAPTLRRQLDAEHEDMLRQVHPSDERYKEIPSQFHCMWPLDAQDDGNLFHRNVAGSFGYPTHCYKVISETDGRTYALRRVENVRTTPGITQQAVEKWKKVNHPNVVPLHRAFISHG-ALFFLSEYYANAQSLYSKFVQGS-------DSASETFLWSVLTQLCGALRAIHGQNIACQVVNTRRLLLTSHNRVRISGTGVLDVLEYDTSKSKRVESLQQEDIANVGKVVLSIGCRHDITPATNISDLLGQFAQSYSANLFEIVKSLVQNE-CTTVQSLGIAVHDHTMNELDNQLSLTDELESQLACEYQNGRMLLLMLKLGLINERPEF--NMDSSWSETGDRYLLKLFRDYVFHQVDEENRPVLDFGHIIDALNKLDGSSAEKILLSSRDGNSVLVASYAEVHKCVKQSFSDLVAAA 510          
BLAST of NO23G01720 vs. NCBI_GenBank
Match: OQR85276.1 (hypothetical protein ACHHYP_12005 [Achlya hypogyna])

HSP 1 Score: 317.0 bits (811), Expect = 1.700e-82
Identity = 180/452 (39.82%), Postives = 263/452 (58.19%), Query Frame = 0
Query:  304 WSVGASSLPAPP----RKTLQRMGVPEQLRQFFLLKDLDKLRALPPDDPRYKEIPPRYHQAYPLD--DAHKARGTTGVSGYPSVIYKVLSHDDGNVYALRRYDSVRTNPKIVSSVVENWRRIQHPNIVKLNKAFVQHGNALFFVHEYCPGAQSITHRYVNTARGQPHQQQRLPEKLLWSFITQLVSALRTVHSAQAACRMLHPNYVLVTTGARLRLGCCGIPDVLESETRKS--IAELQTEDLHMLGRLIVILATRSLPTNPQTLSTALSLLSQHYSPDLQALAIQLCSKPGSLSVFDLGTLLSRHVMDELDRQYAAVDDLEGHLSHEYESGRLFRLSIKLAQVTERPEAQDGRDPAWAETGNRYILKLFKDYVYHQVDEEGQPVLDLGHIVHSLNRLDSGDPEKILLMSRDAHTMIIVSFEDIKRCLEAAWVEFCELA-NTNPSIQELAHP 747
            ++  AS  P+ P    R++L  M +   +R+    +  D LR + P D RYKEIP ++H  +PLD  D    R   G  GYP+  YKV+S  DG  YALRR ++VRT P I    V+ W+R+ H +IV L++AFV HG ALFF+ E+ P A S+  +++        +Q    E  LWS + QL  ALR  H A  AC+++H   +L+T   R+RL   G+ DVLE +T KS  +  LQ ED+  +G++++ +      +    L   L+   + YS +L A+   L  +    +V +L   L  H   ELD QY+  D+LE  LS EY++GR+  L +KL  + ERP+     D +WAETG+RY+LKLF+DYV+HQVD+E +PVLD GHIV +LN+LD   PEKILL SRD  ++++ SF ++ +C++ ++ E    A    PS   LA P
Sbjct:   81 YAASASVTPSSPIVTTRRSLASMALAPTIRRQLDAEHEDMLRQVHPSDERYKEIPSQFHCMWPLDAKDDLFHRNVAGSFGYPTHCYKVISETDGRTYALRRVENVRTTPAITQQAVDKWKRVVHSSIVPLHRAFVSHG-ALFFLSEFYPTAVSLHTKFL-------VEQASASEAFLWSLLVQLSGALRAAHRADLACQVVHARRLLITGHNRVRLSGTGVLDVLEYDTSKSKRVEALQQEDVANVGKVVLSIGVHQEISAATPLVDLLAQFEKAYSAELTAVVRALVLQE-IKTVKELAVELLDHTQTELDAQYSLADELEAQLSAEYQNGRMLLLMLKLGLINERPDF--NLDSSWAETGDRYLLKLFRDYVFHQVDDENRPVLDFGHIVDALNKLDGSSPEKILLSSRDGQSVLVASFAEVHKCVKQSFAELVAAAQRQRPSSTPLAKP 521          
BLAST of NO23G01720 vs. NCBI_GenBank
Match: XP_002185195.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC43327.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 316.6 bits (810), Expect = 2.300e-82
Identity = 183/434 (42.17%), Postives = 262/434 (60.37%), Query Frame = 0
Query:  312 PAPPRKTLQRMGVPEQLRQFFLLKDLDKLRALPPDDPRYKEIPPRYHQAYPLDDAHKARGTTGVSGYPSVIYKVLSHDDGNVYALRRYDSVR-TNPKIVSSVVENWRRI----QHPNIVKLNKAFVQHGNALFFVHEYCPGAQSITHRYVNTARGQPHQQQRLPEKLLWSFITQLVSALRTVHSAQAACRMLHPNYVLVTTGA-----RLRLGCCGIPDVLESETRKSIAELQTEDLHMLGRLIVILATR---SLPTNPQTLSTALSLLSQHYSPDLQALAIQLC-SKPGSLSVFDLGTLLSRHVMDELDRQYAAVDDLEGHLSHEYESGRLFRLSIKLAQVTERPEAQDGRDPAWAETGNRYILKLFKDYVYHQVDEEGQPVLDLGHIVHSLNRLDSGDPEKILLMSRDAHTMIIVSFEDIKRCLEAAWVEFC 732
            P P  + LQ +G+ + L + +    L+  R + PDD R K +P  Y  AY LDD  + RG +   GYPS  + V S +DGN Y LRR+D+VR  +PKI S+V + W  +    +HP I    + F+    A+FFVH+Y PGA+S+  R      G P     L E +LWS I+QLVSALRT+H    A R L  +++L  T +     R+RL C GI DVLE E RK +A+LQ  D+  LGRLI+ LA+    +  T+ +T+ +    L+Q+YSPDL  LA+ L  S P   S+ D+  ++++   DE D  Y + D +E  LS EY+S R+ R+ +KL+ V ERPE   G +  WA++G+ Y L LF+DYV+HQ D  G PV+DLGH++ +LN+LD  D EKI+L SRD  ++++ S+ +I RCLE A+ E C
Sbjct:   90 PMPSFRALQTLGLGDDLWRHYRDISLESCRQMDPDDQRQKAVPLPYCNAYCLDDISQ-RGRSSF-GYPSATFHVTSREDGNAYCLRRFDNVRCVSPKIASTVSDRWTSVAVVQEHPGIAPFYQCFMAQ-RAVFFVHQYIPGARSLKERL-----GGP-----LSECVLWSCISQLVSALRTIHGRNLAARTLQLHHILSNTDSAASRLRVRLNCLGIADVLEFEARKKVADLQRHDVRDLGRLILSLASGTEITHSTDMETVGSCEQFLAQNYSPDLHNLAMTLIRSTPQPPSILDVSRVVAQRAFDEQDAAYQSFDRMERALSAEYDSSRMLRILLKLSYVNERPEF--GPNRRWAQSGDCYALTLFRDYVFHQADGGGYPVMDLGHVISALNKLDGADEEKIVLSSRDGKSLMVASYAEIARCLENAFQELC 508          
BLAST of NO23G01720 vs. NCBI_GenBank
Match: KYQ90625.1 (putative histone-like transcription factor [Tieghemostelium lacteum])

HSP 1 Score: 315.1 bits (806), Expect = 6.600e-82
Identity = 169/425 (39.76%), Postives = 262/425 (61.65%), Query Frame = 0
Query:  314 PPRKTLQRMGVPEQLRQFFLLKDLDKLRALPPDDPRYKEIPP---RYHQAYPLDDAHKARGTTGVSGYPSVIYKVLSHDDGNVYALRRYDSVRTNPKIVSSVVENWRRIQHPNIVKLNKAFVQ----HGNALFFVHEYCPGAQSITHRYVNTARGQPHQQQRLPEKLLWSFITQLVSALRTVHSAQAACRMLHPNYVLVTTGARLRLGCCGIPDVLESETRKSIAELQTEDLHMLGRLIVILATR-SLPTNPQTLSTALSLLSQHYSPDLQALAIQLCSKPGSL-SVFDLGTLLSRHVMDELDRQYAAVDDLEGHLSHEYESGRLFRLSIKLAQVTERPEAQDGRDPAWAETGNRYILKLFKDYVYHQVDEEGQPVLDLGHIVHSLNRLDSGDPEKILLMSRDAHTMIIVSFEDIKRCLEAAWVE 730
            P R+ L    + +QL+Q    + +     L P+DPR K IPP   +YH  +PLD          + GY + +YK +S  DGN YA+RR +  R + +      + WR IQHP IV+L + FV       +++FF +E+ PG++++  R++     QP     + E +LWSFI Q+VSAL+++H AQ  CR++HP+ +L+T   R+R+   GI DV+  ++ +++++ Q EDL + GRLI+ LA R S  T  Q LS ++  LS +YS +L  L   L     +L ++ D+  ++S  ++ E +  +   DDLE  L  E+E+GRLFRL  KL  + ERP      D  W+ETG+RY++KLF+DY++HQV E+G PVLD  H+V SLN+LD+G  EKILLMSRD  ++++VS++D+K+C+E+A+ E
Sbjct:  292 PGRRVLSSFFMSDQLKQDLQNRKVLLCETLDPNDPRTKNIPPMLNKYHSLFPLDLDTSRENQGKMFGYGTSVYKAISTFDGNPYAIRRVEGFRLSSEFALQAADTWRTIQHPGIVQLKEIFVSKEFGDNSSIFFAYEFFPGSETLESRFLTQQSVQP-----IKESVLWSFICQIVSALKSIHQAQLVCRVIHPSKILLTGKNRIRINGVGIFDVVNFDSPRNLSQYQHEDLLLFGRLILTLACRSSASTTAQNLSKSIDYLSVNYSKELYNLVYLLMKPAVNLPTIDDVIQMISGRLLQEANYLHQYTDDLESELYKEFENGRLFRLLSKLGFINERP--MYDMDQRWSETGDRYLIKLFRDYLFHQVYEDGTPVLDYYHVVESLNKLDAGVEEKILLMSRDEQSILVVSYKDMKKCIESAFNE 709          
The following BLAST results are available for this feature:
BLAST of NO23G01720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854773.13.500e-16856.33PAB-dependent poly(A)-specific ribonuclease subuni... [more]
EWM27769.13.500e-16856.33pab-dependent poly -specific ribonuclease subunit ... [more]
CBN77938.19.700e-10246.88Poly(A) ribonuclease subunit [Ectocarpus siliculos... [more]
XP_003293447.12.800e-8541.41hypothetical protein DICPUDRAFT_42055 [Dictyosteli... [more]
XP_008619189.12.700e-8339.82hypothetical protein SDRG_14812 [Saprolegnia dicli... [more]
P0CD65.12.700e-8340.61RecName: Full=PAN2-PAN3 deadenylation complex subu... [more]
OQS04864.12.700e-8339.00hypothetical protein THRCLA_02937, partial [Thraus... [more]
OQR85276.11.700e-8239.82hypothetical protein ACHHYP_12005 [Achlya hypogyna... [more]
XP_002185195.12.300e-8242.17predicted protein [Phaeodactylum tricornutum CCAP ... [more]
KYQ90625.16.600e-8239.76putative histone-like transcription factor [Tieghe... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL038nonsL038Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL035nonsL035Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR062ncniR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR126ngnoR126Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR125ngnoR125Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR124ngnoR124Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK010481NSK010481Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01720.1NO23G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533601gene_10019Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100187g1gene2790Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01720.1NO23G01720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01720 ID=NO23G01720|Name=NO23G01720|organism=Nannochloropsis oceanica|type=gene|length=3681bp
TCATCATGCTTTCTCAACCCCACCACTACACCACGCCACATCCCTCCAAA
GGACAGACACACAGCACCGCCACGCCAGGGATCATTCTCCCAGACGTATG
TATTGCCGATAGTCTCCGGTCTTTCAGTCACTCCGTCAAACTGCATGTTT
CCCAACCGAGATTTCTACCCAGGCGGGCAGCCACCGCCACAGCAACAGGG
CCATCCCCCGCTACCCCAAAACCCCTGGCACCAGCAACAACAGCACCAAC
CGCAACCAGGTCGTGCACCTTCTCCCACCGAGAAAACACTCAATTTTGGC
ACGGTGGGGACGGCGGTGGCTGGAAATCGTCCACCGTTGCCTCCCATGCC
TGCCGAAAATCCCTCCATCACCTACATGAGTGCTGCATCGAGGCTTCCCA
TCACATCCCCATCCCCTCCTCCCCAGCAGCAGCAATTTCAGCAACAACTA
ATCCAGCAGCAACATCATCAGCATCATCAACAACAACAACAACAACAACA
ACAACAACAACAACAGCAACTACAACAACCACAACAACGGCAGCAGCAGT
ACCAAGAGCCTTCCTCCGTCCTCCGCTCTGCCATCAATGCCCCTCAATTT
GTGCCTAAAGGGACAGGAAACACCCCTCCATTTCGACCCACCAGCAGCCC
CTCCATTCCTCCCTCTTCCTCTTCCTACTCCTCCTCCTCCTTGTCGCAAG
GAGGCCTTGGATACCTCAAATCGAGTGCTGCTCCTTTCAACCCAGGCGCG
GCGTTGAACAAGCTCGGGGTGCAAGCTGCGCCGTTTGTCCCTGGTGGTGG
TGGAGGTTTGAGTAGCAATAGTAGCAGCAGCATGTTGGACAAGGGCATGA
CGCGTGCGTCGTCTTCAGTGTCGGTGGATGGTTTGAATACGCAGGCCATG
CCCTTCCAACCAGGAGGACGAGGAGGAGGACAGCAGCAACAGTCGGCCTT
CTATGGCGAGGACGAGGGGGAGGGTGTAGGGGAGGATTATGAGGAGGATA
GACAGCATGGCGGAGGACACCACCAAAACTACTACGGCGACGAGATATTT
GACTGGTCCGTGGGTGCCAGCTCTCTGCCTGCTCCTCCTCGCAAGACCCT
GCAGCGGATGGGGGTACCTGAGCAGCTTCGTCAGTTCTTCCTGCTCAAGG
ACCTGGACAAGCTCCGGGCTCTCCCTCCTGACGATCCGCGCTACAAAGAG
ATTCCCCCGAGATACCACCAGGCTTACCCTTTGGATGACGCGCACAAGGC
CCGGGGGACAACGGGGGTCTCCGGGTACCCTAGTGTGATTTATAAAGTGT
TGTCGCACGATGATGGAAACGTGTACGCGCTCCGGCGCTATGACTCCGTG
CGGACCAATCCAAAAATTGTCTCATCTGTTGTGGAGAACTGGCGGAGGAT
CCAGCACCCGAACATTGTGAAGTTGAACAAGGCCTTCGTTCAGCACGGTA
ACGCTCTGTTTTTCGTCCACGAATATTGTCCCGGAGCTCAGAGCATCACC
CACCGGTATGTCAACACGGCACGCGGACAGCCGCACCAACAGCAGCGCTT
GCCTGAAAAGCTCCTTTGGTCGTTCATTACTCAGTTAGTCTCTGCGCTGC
GCACGGTGCACTCCGCGCAAGCTGCCTGCCGAATGCTCCACCCCAACTAC
GTCCTAGTCACGACGGGCGCGCGCCTCCGCCTCGGCTGCTGCGGGATCCC
CGATGTGCTGGAAAGCGAAACACGCAAATCCATCGCGGAACTCCAAACCG
AAGACTTGCACATGCTCGGGCGTCTGATCGTCATCCTCGCCACTCGCTCC
CTCCCCACGAACCCCCAAACCCTCTCCACCGCCCTCTCCCTCCTATCCCA
GCACTACTCTCCCGATCTGCAGGCGCTTGCCATCCAGCTCTGCAGCAAGC
CTGGCTCCCTCTCTGTCTTTGACCTGGGAACCTTGCTCTCTCGACACGTG
ATGGACGAGTTGGATAGGCAATACGCGGCTGTCGATGACCTGGAAGGGCA
CCTGTCGCACGAATATGAGTCGGGGCGCCTATTCCGCTTGTCCATAAAGC
TAGCGCAAGTCACGGAGCGGCCCGAGGCGCAAGATGGGCGGGATCCAGCG
TGGGCTGAGACGGGCAATAGGTATATTTTGAAGCTGTTCAAGgtaagaaa
gaagggagcgaaggaggacgggagagagaaacgagggtcctcttgttgtc
gtacatgctcgaaaaggatagcgagcactcacgcccatttcttttctttt
ttcctccttcctcctttctctagGACTACGTGTACCATCAAGTCGACGAA
GAAGGCCAGCCCGTCCTGGACCTGGGCCACATTGTCCACTCCCTCAACCG
ACTCGACAGCGGCGACCCCGAGAAGATCCTGCTCATGTCCCGGGACGCGC
ACACGATGATCATCGTCTCGTTTGAAGACATCAAACGTTGTCTTGAAGCG
GCCTGGGTGGAGTTCTGCGAACTCGCGAACACCAATCCGAGCATCCAGGA
GTTGGCGCACCCTCTAGGCCCCGGGCATGAGCACCACATGCCGCCTCGAC
TCGTCCCTCCTTATATATCAGCGCAGTTAGGAGGGGTCGGAGGAGGGGTA
GGGGGAGGAGTAGGAGGAGCGGGATTTGATCATCAGCAGCAGCAGGCTAT
GATGATGATGATGATGCAGGGGGGGAGGGGGGGGGAGGGCAGTATGCTCC
TCCGTGAGAAGGGGGTGAAAGAAGGGAATCGAGGACGGAAGGCAGGAGGG
AGGGATTGAGGGACGGAGGTTATGTACATGCATGTCGAACTGCTTGTATT
GGTATGTGTAATGTAAGGAGGGAGGGTAAGATGGAAGAGCGGGACGGGAC
GGATTGATGGATGATTGGATTCGGCGGGGCAGTAGGAGGAGGAGCAGGGC
GAAAACAATTTAGACGGTTCGCGAGAGGAAGGAGGGAAAAGCAAGAAACA
CATCAATCACGTAACAACAGCCCCAAGAGCTTAATCCGACGACTACAACA
AGGATAATGAAAGAAATGGAAGGGAAGGCAGCGCCAAGAGCTCTTTTTCT
TTAGGGTCGCTGACAAGATGATAAATGAAATATAGGTATAGACAAGGAAG
GCCCATGGAAGGAATGGATAAGCGCGCCAAAGGCCTACGCGCAGATAAGT
GAAATGATGCAGAATGGGGCGAGATTGTTGGCACAGAAAGAAGAAGATAC
TAAGAAACAGCATTACAATAGATACGGGACGTTGCGCCACGGTCTTATTA
GTTTGAGGATATCTTCTGTGTATTTCTTTCTCCCTGTCGTTGTCGTCTCC
TCTGCTCCCGCCCTTCTCTTCTTCGCAATTTCGGCTCCTCCTGCTGCTGC
TATTATTTCTCTTCCTTGCTGTCGTATCCTCTTTTGCTTCATTTTTCTCT
CTTTCAGTCGCCATCGGCCCGGCTGATCGTTGGCCTGTTTTTCTTTGTTT
TTTCGCTTGCTCTAGTCGGCCTACGGTTTACCATCCTCATATGTCTCTTG
GATAAGGGGAGCCACAGAGATACTTCCTGGGTCCTTTCCCCGTTCTCTCC
TCCTCCCTCTTCTCCCTATCTCACTCACGAAAATGTCTCCATCCATGCGC
AGCTCATAGCCGAGAACGAGCGTCTACTCATTCGCATCATCCCTCCCTCC
TCTTTTCCTCCCTCCCTATTCCTGTGTGCCA
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protein sequence of NO23G01720.1

>NO23G01720.1-protein ID=NO23G01720.1-protein|Name=NO23G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=828bp
MFPNRDFYPGGQPPPQQQGHPPLPQNPWHQQQQHQPQPGRAPSPTEKTLN
FGTVGTAVAGNRPPLPPMPAENPSITYMSAASRLPITSPSPPPQQQQFQQ
QLIQQQHHQHHQQQQQQQQQQQQQQLQQPQQRQQQYQEPSSVLRSAINAP
QFVPKGTGNTPPFRPTSSPSIPPSSSSYSSSSLSQGGLGYLKSSAAPFNP
GAALNKLGVQAAPFVPGGGGGLSSNSSSSMLDKGMTRASSSVSVDGLNTQ
AMPFQPGGRGGGQQQQSAFYGEDEGEGVGEDYEEDRQHGGGHHQNYYGDE
IFDWSVGASSLPAPPRKTLQRMGVPEQLRQFFLLKDLDKLRALPPDDPRY
KEIPPRYHQAYPLDDAHKARGTTGVSGYPSVIYKVLSHDDGNVYALRRYD
SVRTNPKIVSSVVENWRRIQHPNIVKLNKAFVQHGNALFFVHEYCPGAQS
ITHRYVNTARGQPHQQQRLPEKLLWSFITQLVSALRTVHSAQAACRMLHP
NYVLVTTGARLRLGCCGIPDVLESETRKSIAELQTEDLHMLGRLIVILAT
RSLPTNPQTLSTALSLLSQHYSPDLQALAIQLCSKPGSLSVFDLGTLLSR
HVMDELDRQYAAVDDLEGHLSHEYESGRLFRLSIKLAQVTERPEAQDGRD
PAWAETGNRYILKLFKDYVYHQVDEEGQPVLDLGHIVHSLNRLDSGDPEK
ILLMSRDAHTMIIVSFEDIKRCLEAAWVEFCELANTNPSIQELAHPLGPG
HEHHMPPRLVPPYISAQLGGVGGGVGGGVGGAGFDHQQQQAMMMMMMQGG
RGGEGSMLLREKGVKEGNRGRKAGGRD*
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Synonyms
Publications