NO23G01470, NO23G01470 (gene) Nannochloropsis oceanica

Overview
NameNO23G01470
Unique NameNO23G01470
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1158
Alignment locationchr23:541939..543096 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:541939..543096 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO23G01470 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR062ncniR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01470.1NO23G01470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633756gene_10042Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01470.1NO23G01470.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01470 ID=NO23G01470|Name=NO23G01470|organism=Nannochloropsis oceanica|type=gene|length=1158bp
ATGTTGCGAGAGgtaggtccaaaggaagagagggagggagggagggaggg
agggggcaatgcctttcccattactttcttctccccctttcatcgcttta
ccctttttttacctgtacatcctctccctccctccctccctccctccctc
ccaaagATGGTGCGTGTATACGCCCAGGGCGGCGACGACGACGACATTTT
TGAAGGCAAAACGGAGGACGACTTTTTCTCCAGGGAAAAGGGAGGAAGGG
AGGGAAGGGGGGAGGATGAGCCGGCTTCACCTGTAGCTGCAGCAGCCGGA
GCCGTGGAGGGAGAGAGGGAGGATGCTGATGCGGCAGACACAGCAGCAGT
GACAGCAGCAACAGCAGCATCAGCAGCAGCGGCGGCCGAGACGAGGAAGA
GGAAGAGAAGAAGTAGTGTAAATGTGGGCAAGAGGTTGCTGAGGATGAGC
TTCCTTCAGAAGGAAGTGGGGGTAGGGCTGGAGGGATGGATGGAAGAAGG
GGAGGAGGACGAGAGGGAGGAGGACGACGAAGACGAGGGATGGGAGGAGG
ACGACCGTGAGGACGAGGACGAGGATGAAGAGCAGGGAGACAAAAATGGT
CGTCGCCCTGCTATCACAGCAGCAGCCGCGAAGCGTGCCGCGACGCAGTC
TGCCTTGCCGCCCACCTCCTTGCGGCAGGGCTTGCAGCAGCAGAGCGTTT
CGGATCAATATCTGAATCGAGTGATAGCGACAGTGAAACCCAAGAATAAG
AGAGATGCGGCTGCGCTTGAGGAAGCCAGGGCGATGGCGATCAAGGAGGC
AGCAGCAGCGGCAGTATCTGCGGCGAGGAGAGTGGAAGGGGCAGGAGCAG
GAGGAGGAGGAGGAGCGGGAGGAGGGAGGAAGGGATGGCAGGGGGGCAAG
GAGGAGAGAGAAGGAGAATGGAAAGTCAATTGGAAGGGAGGGATGGGAAT
GAGCGTACAACAAGTGAAGGAACAAAGGGAGGAAGAGGATGATGATGATT
TGTTCGCAGAGCAGGAGAGGGAGGAAAGGAGGGGGTTTGCAGGAATGGGT
GAGGGCGAGGAGGAGGACCTGGCCGAGGTTGAGGAGGAGGAGGAGGATGT
GGCGTTGCGGCAATTGGGAAGGAGATGGAGAGAGGTGGGGATAGAGGGAG
GAAAGTAG
back to top

protein sequence of NO23G01470.1

>NO23G01470.1-protein ID=NO23G01470.1-protein|Name=NO23G01470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MLREMVRVYAQGGDDDDIFEGKTEDDFFSREKGGREGRGEDEPASPVAAA
AGAVEGEREDADAADTAAVTAATAASAAAAAETRKRKRRSSVNVGKRLLR
MSFLQKEVGVGLEGWMEEGEEDEREEDDEDEGWEEDDREDEDEDEEQGDK
NGRRPAITAAAAKRAATQSALPPTSLRQGLQQQSVSDQYLNRVIATVKPK
NKRDAAALEEARAMAIKEAAAAAVSAARRVEGAGAGGGGGAGGGRKGWQG
GKEEREGEWKVNWKGGMGMSVQQVKEQREEEDDDDLFAEQEREERRGFAG
MGEGEEEDLAEVEEEEEDVALRQLGRRWREVGIEGGK*
back to top
Synonyms
Publications