NO23G01450, NO23G01450 (gene) Nannochloropsis oceanica

Overview
NameNO23G01450
Unique NameNO23G01450
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1995
Alignment locationchr23:535194..537188 -

Link to JBrowse

Properties
Property NameValue
DescriptionSterol-isomerase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:535194..537188 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0016125sterol metabolic process
GO:0016125sterol metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0047750cholestenol delta-isomerase activity
GO:0047750cholestenol delta-isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR033118EXPERA
IPR007905EBP
Homology
BLAST of NO23G01450 vs. NCBI_GenBank
Match: OQR83946.1 (hypothetical protein ACHHYP_14097 [Achlya hypogyna])

HSP 1 Score: 168.3 bits (425), Expect = 3.200e-38
Identity = 74/143 (51.75%), Postives = 99/143 (69.23%), Query Frame = 0
Query:   79 WFVLSGVIHIWIEGSFVFRREQSFLKPGLDFYASGDFRYGSPMEAGTAAMEAITAIFDGPMCFAIAYAVTHQKSWRHPLQLVLCTCHIYGLVWFVLHPLFTKEGWHGHLSSDPFLFWFLVVGMNAPWALLPPYLFFQSWKALV 222
            WFVLSG IH ++E SF F R+  +    +D Y++ DFRYG PME GTAAME ITA  DGP+C   AYA   +K++ HP+ L++C   +YGL WF LHPLF++   + H+SSDP LFW + VGMN PWA+ P  L ++S+ A+V
Sbjct:   56 WFVLSGWIHSYLEMSFTFFRDNQYFSGAMDLYSASDFRYGYPMEEGTAAMETITAFLDGPLCLIAAYAFVTRKNYYHPIALIVCVMQLYGLTWFCLHPLFSE---YSHVSSDPGLFWIICVGMNMPWAIFPSILLYKSFTAIV 195          
BLAST of NO23G01450 vs. NCBI_GenBank
Match: XP_012208560.1 (hypothetical protein SPRG_13330 [Saprolegnia parasitica CBS 223.65] >KDO20748.1 hypothetical protein SPRG_13330 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 164.1 bits (414), Expect = 6.000e-37
Identity = 85/205 (41.46%), Postives = 120/205 (58.54%), Query Frame = 0
Query:   37 LMDWMKVLLGLGVSVSLVFGVLFWTTKKDKSLQTHLLTPVNFWFVLSGVIHIWIEGSFVFRREQSFLKPGLDFYASGDFRYGSPMEAGTAAMEAITAIFDGPMCFAIAYAVTHQKSWRHPLQLVLCTCHIYGLVWFVLHPLFTKEGWHGHLSSDPFLFWFLVVGMNAPWALLPPYLFFQSWKALV--FGEEAEEGVKKGGNVGKK 240
            L +W+ +L+ L +     F +L  T    K   T  +     WFVLSG IH ++E SF F R+  +    +D Y++ D+RYG PME GTAAME ITA+ DGP+C   AYA    KS+ HP+ L++    +YGL WF LHPLF++   H H+SSDP LFW + VGMN PW++ P  L ++S+  +V  F   A+  ++      KK
Sbjct:   20 LSEWLYMLVPLMLLAH--FTMLILTVINPKRAHTFTVG----WFVLSGYIHSYLELSFTFFRDNQYFGGAMDLYSASDYRYGYPMEEGTAAMETITALLDGPLCLLAAYAFVTNKSYYHPVALIVSIMQLYGLTWFCLHPLFSE---HSHVSSDPGLFWVICVGMNMPWSIFPSILAYKSFNEIVAQFERNAKPAIEAEAKKAKK 215          
BLAST of NO23G01450 vs. NCBI_GenBank
Match: XP_008608404.1 (hypothetical protein SDRG_04507 [Saprolegnia diclina VS20] >EQC38077.1 hypothetical protein SDRG_04507 [Saprolegnia diclina VS20])

HSP 1 Score: 163.3 bits (412), Expect = 1.000e-36
Identity = 85/205 (41.46%), Postives = 119/205 (58.05%), Query Frame = 0
Query:   37 LMDWMKVLLGLGVSVSLVFGVLFWTTKKDKSLQTHLLTPVNFWFVLSGVIHIWIEGSFVFRREQSFLKPGLDFYASGDFRYGSPMEAGTAAMEAITAIFDGPMCFAIAYAVTHQKSWRHPLQLVLCTCHIYGLVWFVLHPLFTKEGWHGHLSSDPFLFWFLVVGMNAPWALLPPYLFFQSWKALV--FGEEAEEGVKKGGNVGKK 240
            L +W+ +L+ L +     F +L  T    K   T  +     WFVLSG IH ++E SF F R+  +    +D Y++ D+RYG PME GTAAME ITA+ DGP+C   AYA    KS+ HP+ L++    +YGL WF LHPLF++   H H+SSDP LFW + VGMN PW++ P  L + S+  +V  F   A+  ++      KK
Sbjct:   20 LSEWLYMLVPLMLFAH--FTMLILTVINPKRAHTFTVG----WFVLSGYIHSYLELSFTFFRDNQYFGGAMDLYSASDYRYGYPMEEGTAAMETITALLDGPLCLLAAYAFVTNKSYYHPVALIVSIMQLYGLTWFCLHPLFSE---HSHVSSDPGLFWVICVGMNMPWSIFPSILAYTSFNEIVAQFERNAKPAIEAEAKKAKK 215          
BLAST of NO23G01450 vs. NCBI_GenBank
Match: OQR82131.1 (hypothetical protein THRCLA_11113 [Thraustotheca clavata])

HSP 1 Score: 163.3 bits (412), Expect = 1.000e-36
Identity = 73/143 (51.05%), Postives = 96/143 (67.13%), Query Frame = 0
Query:   79 WFVLSGVIHIWIEGSFVFRREQSFLKPGLDFYASGDFRYGSPMEAGTAAMEAITAIFDGPMCFAIAYAVTHQKSWRHPLQLVLCTCHIYGLVWFVLHPLFTKEGWHGHLSSDPFLFWFLVVGMNAPWALLPPYLFFQSWKALV 222
            WFV+SG IH ++E SF F R+  F    +D Y++ DFRYG PME GTAAME ITA  DGP+C   AYA   ++S+ HP+ +V+C   +YGL WF LHP F+      H+SSDP LFW + VGMN PWA+ P  L ++S+ A+V
Sbjct:   56 WFVMSGYIHSYLEMSFTFFRDNQFFGRAMDLYSASDFRYGYPMEEGTAAMETITAFIDGPLCLLAAYAFVTRQSYYHPVVVVVCVMQLYGLTWFCLHPFFSDS---THISSDPGLFWVICVGMNMPWAIFPSILLYKSFTAIV 195          
BLAST of NO23G01450 vs. NCBI_GenBank
Match: XP_009830743.1 (hypothetical protein, variant 1 [Aphanomyces astaci] >ETV79807.1 hypothetical protein, variant 1 [Aphanomyces astaci])

HSP 1 Score: 159.8 bits (403), Expect = 1.100e-35
Identity = 75/144 (52.08%), Postives = 95/144 (65.97%), Query Frame = 0
Query:   78 FWFVLSGVIHIWIEGSFVFRREQSFLKPGLDFYASGDFRYGSPMEAGTAAMEAITAIFDGPMCFAIAYAVTHQKSWRHPLQLVLCTCHIYGLVWFVLHPLFTKEGWHGHLSSDPFLFWFLVVGMNAPWALLPPYLFFQSWKALV 222
            FW VLSGVIH ++E SF F R+  +    +D Y++ D+RYG PME GTAAME ITA+ DGPMC   AYA   QK + HPL + +    +YGL WF LHPLF+      H+SSDP LFW + VG NAPWA+ P  L  +S+ A+V
Sbjct:   55 FWLVLSGVIHSFLELSFTFFRDNQYFGNTMDLYSAADYRYGFPMEEGTAAMETITALLDGPMCLLAAYAFVTQKPYYHPLVMSVSIMQLYGLTWFCLHPLFSDA---SHMSSDPGLFWIICVGCNAPWAIFPSVLVHKSFTAIV 195          
BLAST of NO23G01450 vs. NCBI_GenBank
Match: XP_008875305.1 (hypothetical protein H310_10649 [Aphanomyces invadans] >ETV95994.1 hypothetical protein H310_10649 [Aphanomyces invadans])

HSP 1 Score: 156.0 bits (393), Expect = 1.600e-34
Identity = 72/144 (50.00%), Postives = 94/144 (65.28%), Query Frame = 0
Query:   78 FWFVLSGVIHIWIEGSFVFRREQSFLKPGLDFYASGDFRYGSPMEAGTAAMEAITAIFDGPMCFAIAYAVTHQKSWRHPLQLVLCTCHIYGLVWFVLHPLFTKEGWHGHLSSDPFLFWFLVVGMNAPWALLPPYLFFQSWKALV 222
            FW VLSG IH ++E SF F R+  +    +D Y++ D+RYG PME GTAAME ITA+ DGPMC   AYA   QK + HPL + +    +YGL WF LHPLF+      H+S+DP LFW + VG NAPW + P  L ++S+ A+V
Sbjct:   55 FWLVLSGFIHSFLELSFTFFRDNQYFGNTMDLYSAADYRYGFPMEEGTAAMETITALLDGPMCLLAAYAFVTQKPYYHPLVMSVSIMQLYGLTWFCLHPLFSDA---VHMSADPGLFWIICVGCNAPWGIFPAVLVYKSFNAIV 195          
BLAST of NO23G01450 vs. NCBI_GenBank
Match: PRP82438.1 (hypothetical protein PROFUN_10138 [Planoprotostelium fungivorum] >PRP83254.1 hypothetical protein PROFUN_09466 [Planoprotostelium fungivorum])

HSP 1 Score: 152.1 bits (383), Expect = 2.400e-33
Identity = 73/146 (50.00%), Postives = 90/146 (61.64%), Query Frame = 0
Query:   75 PVNFWFVLSGVIHIWIEGSFVFRREQSFLKPGLDFYASGDFRYGSPMEAGTAAMEAITAIFDGPMCFAIAYAVTHQKSWRHPLQLVLCTCHIYGLVWFVLHPLFTKEGWHGHLSSDPFLFWFLVVGMNAPWALLPPYLFFQSWKAL 221
            P   W + SG IH  IE +F   R+   +    DFY + DFRYG P++ GTAAME +TAI  GP CF  A A  +   WRHPLQ+V CT  +YGLVWF L P FT  G H   SSDPFLFWF+  G+NAPW + P  L  QS+ ++
Sbjct:   52 PSVLWLLFSGAIHSAIELTFTLDRD-GIISKATDFYGAADFRYGRPLDPGTAAMEYMTAILVGPFCFLTALAAVNGWRWRHPLQIVTCTSQLYGLVWFSLQPTFT-GGLHSQASSDPFLFWFVFFGLNAPWGVFPTILLVQSFYSI 195          
BLAST of NO23G01450 vs. NCBI_GenBank
Match: XP_009830742.1 (hypothetical protein H257_07028 [Aphanomyces astaci] >ETV79806.1 hypothetical protein H257_07028 [Aphanomyces astaci])

HSP 1 Score: 147.5 bits (371), Expect = 5.800e-32
Identity = 75/165 (45.45%), Postives = 95/165 (57.58%), Query Frame = 0
Query:   78 FWFVLSGVIHIWIEGSFVFRREQSFLKPGLDFYASGDFRYGSPMEAGTAAMEAIT---------------------AIFDGPMCFAIAYAVTHQKSWRHPLQLVLCTCHIYGLVWFVLHPLFTKEGWHGHLSSDPFLFWFLVVGMNAPWALLPPYLFFQSWKALV 222
            FW VLSGVIH ++E SF F R+  +    +D Y++ D+RYG PME GTAAME IT                     A+ DGPMC   AYA   QK + HPL + +    +YGL WF LHPLF+      H+SSDP LFW + VG NAPWA+ P  L  +S+ A+V
Sbjct:   55 FWLVLSGVIHSFLELSFTFFRDNQYFGNTMDLYSAADYRYGFPMEEGTAAMETITCVHRKPFPAAYIMYLTERVLRALLDGPMCLLAAYAFVTQKPYYHPLVMSVSIMQLYGLTWFCLHPLFSDA---SHMSSDPGLFWIICVGCNAPWAIFPSVLVHKSFTAIV 216          
BLAST of NO23G01450 vs. NCBI_GenBank
Match: XP_009830744.1 (hypothetical protein, variant 2 [Aphanomyces astaci] >ETV79808.1 hypothetical protein, variant 2 [Aphanomyces astaci])

HSP 1 Score: 103.2 bits (256), Expect = 1.300e-18
Identity = 48/90 (53.33%), Postives = 60/90 (66.67%), Query Frame = 0
Query:   78 FWFVLSGVIHIWIEGSFVFRREQSFLKPGLDFYASGDFRYGSPMEAGTAAMEAITAIFDGPMCFAIAYAVTHQKSWRHPLQLVLCTCHIY 168
            FW VLSGVIH ++E SF F R+  +    +D Y++ D+RYG PME GTAAME ITA+ DGPMC   AYA   QK + HPL + +   HIY
Sbjct:   55 FWLVLSGVIHSFLELSFTFFRDNQYFGNTMDLYSAADYRYGFPMEEGTAAMETITALLDGPMCLLAAYAFVTQKPYYHPLVMSVRDVHIY 144          
BLAST of NO23G01450 vs. NCBI_GenBank
Match: CEN62439.1 (Putative EBP domain protein [Aspergillus calidoustus])

HSP 1 Score: 99.4 bits (246), Expect = 1.800e-17
Identity = 53/149 (35.57%), Postives = 76/149 (51.01%), Query Frame = 0
Query:   79 WFVLSGVIHIWIEGSFVFRRE-----QSFLKPGLDFYASGDFRYGSPMEAGTAAMEAITAIFDGPMCFAIAYAVTHQKSWRHPLQLVLCTCHIYGLVWFVLHPLFTKEGWHG--HLSSDPFLFWFLVVGMNAPWALLPPYLFFQSWKAL 221
            WFVLSG +H + EG F+   +     Q F       YA  D RY    +     ME IT +  GP+CF +AY++ H  S RHPLQ+++C  H+YG   +    L+  +  HG  +   +PF FW     MN  W ++P Y  +QS K +
Sbjct:   65 WFVLSGTLHCFFEGYFMINHDRMVSAQDFFGQLWKEYAMSDSRY-LTSDTLVLCMETITVLLWGPLCFGVAYSILHNHSLRHPLQIIVCMAHLYGDTLYFATSLY-DDHVHGRPYCRPEPFYFWVYYFFMNFIWIVVPAYYLYQSMKTI 211          
The following BLAST results are available for this feature:
BLAST of NO23G01450 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
OQR83946.13.200e-3851.75hypothetical protein ACHHYP_14097 [Achlya hypogyna... [more]
XP_012208560.16.000e-3741.46hypothetical protein SPRG_13330 [Saprolegnia paras... [more]
XP_008608404.11.000e-3641.46hypothetical protein SDRG_04507 [Saprolegnia dicli... [more]
OQR82131.11.000e-3651.05hypothetical protein THRCLA_11113 [Thraustotheca c... [more]
XP_009830743.11.100e-3552.08hypothetical protein, variant 1 [Aphanomyces astac... [more]
XP_008875305.11.600e-3450.00hypothetical protein H310_10649 [Aphanomyces invad... [more]
PRP82438.12.400e-3350.00hypothetical protein PROFUN_10138 [Planoprotosteli... [more]
XP_009830742.15.800e-3245.45hypothetical protein H257_07028 [Aphanomyces astac... [more]
XP_009830744.11.300e-1853.33hypothetical protein, variant 2 [Aphanomyces astac... [more]
CEN62439.11.800e-1735.57Putative EBP domain protein [Aspergillus calidoust... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR062ncniR062Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01450.1NO23G01450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608725gene_10044Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01450.1NO23G01450.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01450 ID=NO23G01450|Name=NO23G01450|organism=Nannochloropsis oceanica|type=gene|length=1995bp
ATGGAGgtaatcacgtttcttgggtagagatgaggcttcattgtcctcct
cctctcctcctctcgtctgcttaccgcaaccgaccaccgccccccctccc
tcccataccctgtctttcttcgtaacagAGCATCAAGCAATATGCCTCTG
CGGCCTACGAATCCGTCGCTGAGCTAACCAACAACTACGCTGGCGGTATG
GCTGCGCCAAAGGCGCCAGTAGTCATGACGCTGATGgtaataaggaggga
gggacggagggaaggggctgtgactgtgacacgtcgatccttctttgttt
caccctcatttcactcatgcacccgtattcttctttcatctccccctctt
tcttcatatcctcgtagGATTGGATGAAAGTCTTGCTGGGCCTAGGTGTG
AGCGTTTCCCTCGTCTTCGGCGTGCTATTTTGGgtatggaagaagggagg
agggagggaagggaggaaggcacggtgggctcgaatggagtttaatccct
cacacaatggaggcgcgtctgatagagaacaagaagctaccacatgccct
ttttataaccttgccttccctaccctccctcccttcttccctccctcccg
ccttccttttcagACAACGAAAAAGGACAAGAGCCTGCAAACGCATCTCC
TTACACCCGTCAACTTTTGGTTCGTGCTTTCGGGGGTCATTCATgtaagt
tagaggaggaggaaggaaagagaaagggaggaggatatgaagtaggggga
tggatggatagagtccgtcaagaacgtttcaattcttctctacggtgtca
catgcacttgtcgatgctccccccaacctctgtccaattcatgtacgtaa
aaagagaaggaggaagggagggagggaagaagatgtcaaccggagtgtct
ccggttgattgtcacgcacaatgaaagtataatgttgcctccctccatcc
ctccctccatccctccctccatccctccccctagATCTGGATTGAGGGGT
CCTTCGTCTTCCGTCGCGAGCAGAGCTTCCTTAAGCCCGGCCTCGATTTT
TATGCTTCTGGTGATTTCCGCTATGGCTCGCCAATGGAGgtaagcaaacc
ttcccaccctcccttcccccccccttcctcccaatcgtgtccgcctcgtc
gagcccgtcactctgacacctgcgtcttcctatcaatgacatgcacttcc
ggacattatctcaaccctcctccccctttttccccccctccctccctctc
tctctctccctcccttctttttctcctttccctcccttcctcccctcttt
ttctcagGCGGGCACCGCAGCTATGGAAGCTATCACCGCTATTTTCGATG
GGCCCATGTGCTTCGCTATTGCCTATGCCGTCACGCACCAGAAATCGTGG
CGGCATCCCCTGCAGTTGGTTCTGTGCACTTGTCATgtgcgtccggcttt
ttcttccctccttccctccctccctccctcccttgtgtgtgtcatttcgt
atgtctgtatgtcggtgcctatctttcaccttctccatatcttgatctcc
tccttttctcactcccatcccgttaccccatggtgtttcttgattgcttc
agctgcaagcttgcctaatcccccctccctcccctccctcccctcccgtc
cttcatccgctctccttctctccttccctccttccctagATCTACGGCCT
TGTCTGGTTTGTTCTCCACCCGCTCTTCACGAAGGAGGGGTGGCATGGTC
ATCTTAGTTCCGATCCTTTCCTCTTTTGGTTCCTCGTCGTGGGGATGAAC
GCCCCTTGGGCTCTCCTCCCTCCCTACCTCTTTTTCCAGTCCTGGAAAGC
ACTTGTATTTGGGGAAGAAGCGGAGGAAGGGGTGAAGAAGGGAGGGAATG
TGGGAAAGAAGAAGAGTGCAAAGGCTGAGCCATCTATGCCCGCCACGCCT
GCTACCCCCGCTTCGGAGGGGCGGCCACGAAGGCGGCGGTTGTGA
back to top

protein sequence of NO23G01450.1

>NO23G01450.1-protein ID=NO23G01450.1-protein|Name=NO23G01450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MESIKQYASAAYESVAELTNNYAGGMAAPKAPVVMTLMDWMKVLLGLGVS
VSLVFGVLFWTTKKDKSLQTHLLTPVNFWFVLSGVIHIWIEGSFVFRREQ
SFLKPGLDFYASGDFRYGSPMEAGTAAMEAITAIFDGPMCFAIAYAVTHQ
KSWRHPLQLVLCTCHIYGLVWFVLHPLFTKEGWHGHLSSDPFLFWFLVVG
MNAPWALLPPYLFFQSWKALVFGEEAEEGVKKGGNVGKKKSAKAEPSMPA
TPATPASEGRPRRRRL*
back to top
Synonyms
Publications