NO23G01340, NO23G01340 (gene) Nannochloropsis oceanica

Overview
NameNO23G01340
Unique NameNO23G01340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2157
Alignment locationchr23:486161..488317 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:486161..488317 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
Vocabulary: Molecular Function
TermDefinition
GO:0003777microtubule motor activity
Vocabulary: INTERPRO
TermDefinition
IPR027640Kinesin-like_fam
Homology
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BLAST of NO23G01340 vs. NCBI_GenBank
Match: EWM22917.1 (hypothetical protein Naga_101175g1 [Nannochloropsis gaditana])

HSP 1 Score: 122.9 bits (307), Expect = 3.900e-24
Identity = 133/295 (45.08%), Postives = 158/295 (53.56%), Query Frame = 0 
Query:  387 LGSVTCASLKKEGDWNVKNDATCASSLPLWYDHMRMFAGYPADQQLAYLNDFC--------GDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASAPLDKTPGTVETPNGLQAVSLKEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRSKPYPSDYPGLRLGCVREGGGKTQGGYCAMKRAVLAGAPATVGAXXXXXXSVCDFYLSCCYAQYAKMNWTDLPNAEVVEAHCPGATVYLNGKLCTV 674
            LG VTCASL    ++N   D TC + L  +Y+H RMFAG+ +D+Q  ++ +FC                               XXXXXXXXXXXXXXXXXXXXX    XXXXXXXXXXXXXXXXXXXXXXXXXXXX   A  PLD TP T++T NG  A     GG                              + SK +P DYPGLRLGC+ +      GGYCAMKRA +   P           + CDF+LSCCYAQY +M++  LP  E +E  CPGA   L G +CTV
Sbjct:  138 LGGVTCASLGDTDNYNAVQDPTCTAFLAQYYEHARMFAGFASDEQGKFMEEFCRPPPASSLSCGQSLTMVLEAERLGCALPPPRXXXXXXXXXXXXXXXXXXXXXTRQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHGAPEPLDTTPVTIQTANGPVAAPPTTGGQKEAMAVEKAAAKKDETPQTGRKNVTEG--MNSKAFPFDYPGLRLGCITD----PTGGYCAMKRAAVPSEP------LGRTETACDFFLSCCYAQYDRMHFDGLPPVEEIETACPGAKAALRGPVCTV 420
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BLAST of NO23G01340 vs. NCBI_GenBank
Match: EWM23853.1 (hypothetical protein Naga_100464g6 [Nannochloropsis gaditana])

HSP 1 Score: 85.1 bits (209), Expect = 9.000e-13
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 0 
Query:  581 YPSDYPGLRLGCVREGGGKTQGGYCAMKRAVLAGAPATVGAXXXXXXSVCDFYLSCCYAQYAKMNWTDLPN--AEVVEAHCPGATVYLNGKLCT 673
            +P DYPGLRLGC+++   +    +CA+KRA + G    VG         CDFYLSCCYAQY +  +  +P    E VEA CPG+T++L G +CT
Sbjct:  275 FPVDYPGLRLGCIKDPKDEE---FCAVKRAAVPG----VGGDAEDGGPACDFYLSCCYAQYVQ-TFGSVPTEFVEEVEAACPGSTLFLQGSVCT 360
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BLAST of NO23G01340 vs. NCBI_GenBank
Match: XP_005853779.1 (hypothetical protein NGA_0459000 [Nannochloropsis gaditana CCMP526] >EKU22579.1 hypothetical protein NGA_0459000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 84.7 bits (208), Expect = 1.200e-12
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 0 
Query:  581 YPSDYPGLRLGCVREGGGKTQGGYCAMKRAVLAGAPATVGAXXXXXXSVCDFYLSCCYAQYAKMNWTDLPN--AEVVEAHCPGATVYLNGKLCT 673
            +P DYPGLRLGC+++   +    +CA+KRA + G    VG         CDFYLSCCYAQY +  +  +P    E VEA CPG+T +L G +CT
Sbjct:  210 FPVDYPGLRLGCIKDPKDEE---FCAVKRAAVPG----VGGDAEDGGPACDFYLSCCYAQYVQ-TFGSVPTEFVEEVEAACPGSTAFLQGSVCT 295
The following BLAST results are available for this feature:
BLAST of NO23G01340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM22917.13.900e-2445.08hypothetical protein Naga_101175g1 [Nannochloropsi... [more]
EWM23853.19.000e-1345.74hypothetical protein Naga_100464g6 [Nannochloropsi... [more]
XP_005853779.11.200e-1245.74hypothetical protein NGA_0459000 [Nannochloropsis ... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01340.1NO23G01340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568481gene_8487Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01340.1NO23G01340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01340 ID=NO23G01340|Name=NO23G01340|organism=Nannochloropsis oceanica|type=gene|length=2157bp
ACAGTCCTGACATGCGTTGTCGCTCTCAGATATCCACCGCCCTCCTGCTC
TTTGCGGGCGCAGGGGGGCTCATCCACGCCCAACAAGAAACTATCCCTCT
TCCCCTTCATTCTTCCTCCCTCCGCGGCGGGACCAGTGCCAACAGCGGCC
AAGGCAACCGACAGCTGCAACCTTCTAAGCCGGCAAAGCAAACCTGGACG
CTGCCTGGTGGTGTCAGTGTCAATTTGGGTCCTAATGGACCCACTGTAAA
CGTGCCAGGCCAAGGACAAATCTCGCCCTGGCAGCAACAACAGCAGCAGC
AACAACAGGCCGCGCAACAAGCAGCAGCAGCCATAGCGGCTGCTCAGCAG
CAGCAGCAGCAGCAACAGGCCGCTCAAGCAGCCGCAATTGCAGCAGCACA
GCAGCAACAACAGCAGCAACAACAACAGGCCGCGCAACAAGCAGCAGCAG
CCATTGCGGCAGCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCGGCAACGCGAGCAAGA
GGCCGCTCAAGCAGCAGCTGCTGCAGCAGCAGCTCAACAGCAGCAGCAGC
AGGACCAGGAGTGGCAGCAGCAACAACAACAACAACAACACGAGCAAGAG
GCCGCACAAGCAGCAGCTGCAGCAGCAGCAGCCCAACAGCAGCCGCAGCA
GGACCAGGAGTGGCAGCAGCAGCAGCAACAACAACACGAACAAGAGGCCG
CACAAGCAGCAGCAGCAGCAGCCCAACAGCAGCAGCAGCAGCAGCAGGAC
CAGGAGTGGCAGCAGCAGCAGCAACAACAACACGAGCAAGAGACCGCTCA
AGCAGCAGCAGCAGCAGCCGCAGCCCAACAGCAGCAGCAGCAGCAGCAGC
AGGAGTGGCAGCAGCAGCAACAACAACAACACGAGCAAGAGGCCGCGCAA
GCAGCCGCAGCCCAACAGCAGCAGCAGCAGCAGCAGCAAGAGGCCGCGCA
AGCAGCCGCAGCCCAACAGCAGCAGCAGCAGCAGCAAGAGGCCGCGCAAA
CAGCCGCAGCCCAACAAGCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCC
CCTTCACCCCCTGCTCCCAAGCCTGTCACCCCTCCCCCTCCATCCCCTGT
CTCCGAGCCTCCCACGGCCCTTGGTTCCGTGACGTGTGCCTCCTTGAAGA
AAGAGGGCGACTGGAATGTAAAGAACGACGCAACCTGCGCTTCCTCTCTC
CCCCTCTGGTATGACCACATGCGGATGTTTGCCGGCTATCCCGCCGACCA
ACAACTGGCCTACTTGAATGACTTTTGTGGGGACGATGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGGTGGTGGTGGTGGTGGTGGTGGCCCTgtc
acttgcgggaagacctacactatggctctgcaaggcgaacggatgcagtg
ccccacaccgcccgccaaatcccctgccactccctcccccactccccccc
ctctccccccctgccgaccagCCCCCTCCTGCTATACCTGAAGAGACCCG
AAAGCCGCCTGTCGTTCATCCCCTCCCTCCCACTGACCCCCTTCCTCCAC
CTCCCGTCGCCACCGACGGGAATGGCGACATTGTCGTCCCTCCTGCCGCG
GCGGCGGCGGCTGTTGCTGCTGCCAACGCAAATGGGGCTGCATCTGCTCC
TCTTGATAAAACGCCTGGAACCGTTGAGACACCCAACGGCTTGCAGGCCG
TTTCCCTGAAGGAAGGCGGAAAGGAGGGTTGGCGAGAGGCCGGGAAGAAG
GAGAAGGGCAAGGGGAAAGAGAAGGGGAAAGAGAAGGAGGAGGAGGTGGT
GACAAATGAGTTGAGGTCAAAACCCTACCCTTCCGACTATCCCGGCTTGC
GGTTGGGTTGCGTGAGGGAGGGAGGTGGAAAGACACAGGGAGGGTACTGT
GCGATGAAACGAGCAGTGCTTGCCGGGGCACCTGCCACCGTGGGCGCAGC
TGGAGGAGGGGGAGGATCGGTGTGTGATTTCTACCTGTCGTGTTGTTATG
CACAATACGCGAAAATGAACTGGACGGATCTGCCTAATGCGGAGGTGGTT
GAGGCTCATTGTCCCGGGGCTACGGTTTATTTGAACGGGAAATTATGCAC
GGTTTAA
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protein sequence of NO23G01340.1

>NO23G01340.1-protein ID=NO23G01340.1-protein|Name=NO23G01340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=674bp
MRCRSQISTALLLFAGAGGLIHAQQETIPLPLHSSSLRGGTSANSGQGNR
QLQPSKPAKQTWTLPGGVSVNLGPNGPTVNVPGQGQISPWQQQQQQQQQA
AQQAAAAIAAAQQQQQQQQAAQAAAIAAAQQQQQQQQQQAAQQAAAAIAA
AQQQQQQQQQQQQQQQQQQQQQQQRQREQEAAQAAAAAAAAQQQQQQDQE
WQQQQQQQQHEQEAAQAAAAAAAAQQQPQQDQEWQQQQQQQHEQEAAQAA
AAAAQQQQQQQQDQEWQQQQQQQHEQETAQAAAAAAAAQQQQQQQQQEWQ
QQQQQQHEQEAAQAAAAQQQQQQQQQEAAQAAAAQQQQQQQQEAAQTAAA
QQAPPPPPPPPPPPSPPAPKPVTPPPPSPVSEPPTALGSVTCASLKKEGD
WNVKNDATCASSLPLWYDHMRMFAGYPADQQLAYLNDFCGDDAAAAAAAA
AAAGGGGGGGGPPPPAIPEETRKPPVVHPLPPTDPLPPPPVATDGNGDIV
VPPAAAAAAVAAANANGAASAPLDKTPGTVETPNGLQAVSLKEGGKEGWR
EAGKKEKGKGKEKGKEKEEEVVTNELRSKPYPSDYPGLRLGCVREGGGKT
QGGYCAMKRAVLAGAPATVGAAGGGGGSVCDFYLSCCYAQYAKMNWTDLP
NAEVVEAHCPGATVYLNGKLCTV*
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Synonyms
Publications