NO23G01300, NO23G01300 (gene) Nannochloropsis oceanica

Overview
NameNO23G01300
Unique NameNO23G01300
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4496
Alignment locationchr23:467937..472432 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:467937..472432 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO23G01300 vs. NCBI_GenBank
Match: EWM26787.1 (hypothetical protein Naga_100018g13 [Nannochloropsis gaditana])

HSP 1 Score: 201.1 bits (510), Expect = 1.600e-47
Identity = 144/496 (29.03%), Postives = 226/496 (45.56%), Query Frame = 0 
Query:  360 PSVARKLQGKAVEEPLAEELTFEQA------LMKGECEIYSN--GTATLTLCLESATQPADNLALLKGFLYNNGSTAACDVKMRAVNAPGLIQLWPDWSPTSAYEMYFN---PKQVTSVGMTSTPNA--DESFPSLEVISFRPCAPTEDVXXXXXXXXXXXXXXXXXXXXXXXXXXAAKLAGAFTTKKVPIENLVLPSVPDP-DVEDKRSLAVEINPVGSMYAPGGADKGLRAFKSDYDVTLDPNYQDGVEVTPLNEDYLICKSFGSQHDNTLEMTVCLENAKTWHEKGIGRVVSSDLALVNTGTQGVCNVRVYIEGMENEL-DHFP-QLIDDNGFDTYPIFSDWYAPGRTTHMGSAIPKAKGVPRFTVLSDFYACEQPDAS-IVHRRFRCTE---STHKPNGAVKICVYTDLKEWREENGERVVAVEGFLSNTGEAPLCNLTVDISNFTNALDYTGDWMPTYTSYLDEMSTVKFSANVPYVKGRPRVMLKKYSIC 836
            PS+ R  +     E LA  +  E A      +  G C + +   G   + LC++ A    D +  L G + N+G  A CD  MR  +    + +   W  TSA    F    P +   +G+T++P    +   P L V SFRPC                                               + L +PS P P  +  +   A     V  +      D G    +++ +     +       T    D+ +C  + +  D   E+ +C ++AK+W ++ +GR+V ++L LVNTG  GVCNV + IE +++EL DH+P   +DD+G +T+P +  +YAP +  ++G+A+P A G P  ++   F AC+ P    +  R+  CTE   S    +  +  C+Y+  K WRE  G R+V VEG++ N G+   CN+ VDI N  +A    G+WMPTY   L   ST+KF AN+PY KG P+  L  +  C
Sbjct:  767 PSLPRVEKEVNTAEGLARRMQEEDAELSPVSVSPGRCGMATGMAGLFQIRLCVDRANTWGDGIVQLAGRVENSGKEAICD--MRLGSNFEKVSIATSWPATSAAGEDFEALLPGETREIGLTASPRGLIEGVAPMLSVTSFRPCGR---------------------------------------------QGLAVPSPPQPLQLTWEGPSAETAKHVLQISGFSHQDLG-EGVQAESEQRHLASKGKAAPTTFDTIDWELC-GYYTGLDGESELALCWKDAKSWKDREMGRIVQTNLVLVNTGKLGVCNVTLEIENLDSELGDHYPNNWMDDDGRETFPSYPGYYAPEQIVNLGAAVPIASGFPDVSIAPTFTACQPPPPKPVAPRKADCTEVPGSGANADVLLNFCLYSKPKIWREYEGPRIVMVEGYIENIGQGTACNIEVDIENLQDAQATWGEWMPTYPYKLSPGSTLKFGANIPYKKGIPKSHLVSFDSC 1213
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BLAST of NO23G01300 vs. NCBI_GenBank
Match: EWM22920.1 (hypothetical protein Naga_101147g1 [Nannochloropsis gaditana])

HSP 1 Score: 180.3 bits (456), Expect = 2.800e-41
Identity = 99/198 (50.00%), Postives = 125/198 (63.13%), Query Frame = 0 
Query:   11 SVLAALAAANVAAAKPVTFANPTMNVITAVQEGPLSPGECTSYEAGDANAVLCMQEATLTAPDNLLLAGFLFNNGTAEICDLKLAPVNAPGLTAFWPDWAGAGASYEKYFNREQMTMVGLTTIPKKDGTMPSFEVVGMRACGPKEGMENKLKGETEGSDV------------------LLSRKIPLADSPMHPPVEKK 191
            +++AALA+A++  A PV   +PT                C SY++GDANAVLC+QEA LTAP+NLLLAGFLFNNGT E+CD+KLAP+NAPG+TAFWPDWA + ASYEKYFN +QMT VGLT  P  DG++PS E+V +RAC P +     +                           L +RKI L DSPM PPV+K+
Sbjct:   66 ALVAALASASLGLAAPV---DPTTPXXXXXXXXXXXXXXCMSYQSGDANAVLCVQEAKLTAPNNLLLAGFLFNNGTVELCDVKLAPLNAPGVTAFWPDWA-SDASYEKYFNLKQMTSVGLTATPNADGSLPSVEIVSLRACDPTKDAAVPVAXXXXXXXXXXXXXXXXXXXXXXTVFPLETRKIALEDSPMMPPVKKE 259
[Close]
BLAST of NO23G01300 vs. NCBI_GenBank
Match: EWM22919.1 (hypothetical protein Naga_101679g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 87.8 bits (216), Expect = 1.900e-13
Identity = 54/125 (43.20%), Postives = 64/125 (51.20%), Query Frame = 0 
Query:  786 SNFTNALDYTGDWMPTYTSYLDEMSTVKFSANVPYVKGRPRVMLKKYSICPHKV-VAPVEEAPAAGVAXXXXXXXXXXXXXXXXXXXXXXXPVDPPALDVPTIAIDPPVRGEEEAVAEVEAEIEE 910
            SNF NA  Y GDWMPT+  YLDE+STVKF+ANVPY KG PRV LKKYS+CPH V V   EE P                              D  A + P + + PP+  E     +V AE E+
Sbjct:    5 SNFENARSYWGDWMPTFPYYLDELSTVKFAANVPYPKGHPRVSLKKYSVCPHDVEVVSTEEVPTE----------------------------DAVAANTPDLPLPPPLPLEGGPAVDVPAEGED 101
The following BLAST results are available for this feature:
BLAST of NO23G01300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM26787.11.600e-4729.03hypothetical protein Naga_100018g13 [Nannochlorops... [more]
EWM22920.12.800e-4150.00hypothetical protein Naga_101147g1 [Nannochloropsi... [more]
EWM22919.11.900e-1343.20hypothetical protein Naga_101679g2, partial [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01300.1NO23G01300.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602214gene_8481Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101147g1gene7530Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01300.1NO23G01300.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01300 ID=NO23G01300|Name=NO23G01300|organism=Nannochloropsis oceanica|type=gene|length=4496bp
CGCCTCGCTCCCTGGCTCCGTCGTCCTCGCCATCTTCCACGGACTTCCCT
GTCTTTTCCCTTCGAATCCTTTTTGTACACAGATCCTTTTTTGTACCAAG
CTGTGCGTGGGGTGCTTTGTATCTAAGAAAGACGTACACACGATGCACGA
TGGCCCATTCCTTCTATGGAACAAAACACAACCCACCATCCCTACTAAAT
GACAGAGGGATGTCGCCGCATACATAGTCTCTTTCCCTCCCCAAGTCCAA
TGGCTGCATCTTCTAAGCCACGGCTCTGCCCGGCAAGCAGCACATCCACA
TACACTCCACACACACACACACACACACACACACACACACACACAAAGGC
CAAGTCTTCGCCCCTCGTCTCCCGTCCTTCTCCGAGCCTGATTCCTCACT
CTTACGTGACTTTTACCCCGCGCAAGGGAAGGAATCAAGGAGGAAAAAAG
TATACACATAAGTACCCACACTCACCTTTCGCACACTCTCTCCCCTTTTC
AGAAGATGTTTATCCGTCATAGCACAGTCACGGCCTCGGTCCTCGCGGCC
TTGGCCGCTGCTAACGTCGCGGCGGCCAAGCCCGTCACTTTTGCCAACCC
AACTATGAATGTGATCACTGCCGTTCAGGAAGGCCCGCTGTCCCCCGGGG
AGTGCACGTCTTATGAGGCGGGGGATGCCAATGCCGTGCTTTGCATGCAG
GAGGCTACCCTTACTGCGCCTGACAATCTCTTGgtacgtctctctcttgt
ccgcttccctttccctcctttcgcccttccatgtctttccccccctccct
cccccctccccccttcccttccttgcttccctccatccttcctcttccca
ggtgctcacattctcacacacctccctccctccctccctccctccctcct
ccctccctccccggtagCTCGCCGGCTTCCTCTTTAACAACGGCACGGCC
GAGATCTGCGATCTTAAGCTTGCCCCTGTCAATGCCCCTGGTCTGACGGC
CTTCTGGCCCGACTGGGCCGGCGCGGGGGCCTCGTACGAAAAGTACTTCA
ACCGCGAGCAGATGACAATGGTAGGCTTAACGACCATCCCGAAAAAGGAC
GGCACCATGCCCTCCTTTGAGGTGGTGGGTATGAGGGCCTGTGGCCCTAA
GGAGGGGATGGAGAACAAACTGAAGGGAGAGACGGAGGGCTCCGATGTAT
TGCTGAGCCGGAAGATCCCCTTGGCGGATTCGCCGATGCACCCGCCGGTG
GAGAAGAAGGAGGGGGAGGAGAAGGAGGTGAAGGAAGAGGAGGTCGAGGA
AGAGAAGGAGGCGGAGAAGAAGGAGGGGGAGGAGAAGGAGGGGGAGGAGG
AGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAGAAGGGGGTAGAGAAGGAG
GAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGGGGT
CGAGAAAGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGG
AGCATGAGAAGGATGAGGATGAGGATGAGGAGGAGGAGGAAGAAGAAGAG
GAGGAGGAGGAGGAGGAGGAGCTGGAGAAGGAGAAAAAGGAGGAGGGAGA
CAAAATGAAGAAGGAGGACAAGATGAAGAAGAAGAAGGAGATCAGAAAGA
AGGACAAGGCGATGAAGAAGAAGAAGGACAAGGCGATGAAGAAGAAGAAG
AACAAGGCGAAGAAGGGGGATGAGGTGGTGGCGGGTACCGCTGCTGCCTC
TGCGATAACCATCGATCCGTCGGTAGCCCGCAAGCTCCAAGGCAAGGCTG
TTGAGGAACCGTTGGCCGAGGAGCTAACGTTCGAGCAGGCGCTAATGAAG
GGTGAATGTGAGATCTATTCAAACGGAACGGCCACTTTAACCCTGTGTCT
TGAGAGCGCCACCCAGCCCGCCGACAACCTGGCGTTACTCAAGGGCTTCC
TGTACAACAATGGCTCAACGGCTGCATGTGACGTTAAGATGAGGGCCGTT
AACGCCCCGGGCCTCATTCAGCTGTGGCCTGACTGGAGCCCGACCTCGGC
GTATGAGATGTACTTCAACCCCAAGCAGgtagacaagcaagcccccccca
gtccttccctccctccctccctccgagcataccctgctccctcccctttt
cgatagctccgtcctctcccctctccccctccctacctcctttcggtgtc
cttcattcctgtacttcggactcaccccgcccgccctctctccccccctc
cctcctccccttcctcagGTCACCTCCGTGGGGATGACCAGCACACCCAA
CGCCGACGAGTCCTTCCCCTCCCTGGAAGTAATCTCCTTCCGTCCCTGCG
CCCCTACCGAAGACGTCGCTGCTGCTACCACCCCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTCCCCCTGCTGCTACAGGTGCTGCAGGCGCTGATGCTGC
TAAACTCGCCGGAGCGTTCACCACCAAAAAGGTGCCGATTGAGAACTTGG
TCCTGCCGTCGGTTCCTGACCCCGACGTTGAGGATAAACGGTCGTTGGCC
GTTGAAATCAACCCGGTGGGCAGCATGTATGCGCCAGGGGGGGCGGACAA
GGGTCTCAGGGCCTTCAAGTCCGACTATGACGTGACGCTTGACCCTAACT
ATCAGgtatggccgcccctccctccctctctccctccctccctcccaccc
ttcctctcctccccctcaacccctcttccttccctctctttctccctctt
gtcttgaacttcccaacccttcatgctaccctccctccctccctccctcc
ctccccccctcccttagGACGGCGTGGAAGTGACTCCCCTCAACGAAGAC
TACCTCATCTGCAAGAGCTTTGGGAGCCAGCACGACAACACCCTCGAGAT
GACCGTCTGCCTCGAGAATGCGAAGACGTGGCACGAGAAGGGCATCGGCC
GAGTCGTTTCGAGCGACCTCGCCCTTGTCAACACAGGCACCCAAGGgtaa
gtgagctgcctttccctccttccctcccttccctctcttcctccctccct
cccgcatctcaatctctctcaatcaagatccagaaatacgcgccgtatcc
tcctgacatcgtcttccctccctccgtccctccctccctccctctctccc
tccctccctccccctcgcccagCGTCTGCAACGTCCGCGTGTACATTGAG
GGGATGGAAAACGAGCTCGATCACTTCCCTCAGCTCATCGACGACAACGG
CTTCGACACCTACCCTATTTTCTCCGACTGGTACGCCCCCGGACGCACCA
CTCACATGGGCTCTGCCATTCCTAAGGCGAAGgtaaataaggacgcaaga
agcaccctccttccctctttcccttcctccctccttcattccttccttct
tttcttcgctctccttccctttccccgtggttcctttctcacacccacct
catcttctcctgtctcatcctccctccctccctccctgcctccctccctc
cagGGTGTCCCTCGCTTTACGGTCTTGAGCGACTTCTATGCCTGTGAGCA
GCCGGATGCCAGCATTGTCCACCGCCGCTTCCGTTGCACCGAATCAACGC
ACAAGCCCAACGGCGCCGTTAAAATTTGCGTTTATACGGATTTGAAGGAA
TGGAGGGAGGAGAACGGCGAGCGGGTGGTGGCGGTGGAGGGCTTCCTCTC
CAATACGGGGGAGGCTCCCTTGTGCAATCTGACGGTCGACATTAGgtggg
gagggagggagggagggagggaggggggagggagggagggagggagggac
agagggggtcgcagcacgtacataatagggatgccagcatacatttacac
gcactcccctccctccatcttcctcctgctatcggtcatccccacacaca
cccatgtgaccccctccccccaaaataacacacacacacacacacaaagc
agtacgacaaacatccatccacacaccattcacacccacgtacgacatac
accccgcctcacacacccctttctcctttctcccctcaacagCAACTTCA
CGAACGCCCTGGACTACACTGGTGACTGGATGCCGACATACACGTCCTAC
CTTGACGAGATGTCGACAGTGAAGTTCTCGGCCAATGTTCCATACGTCAA
GGGTCGTCCGCGTGTGATGCTCAAGAAATACTCCATCTGCCCGCATAAGG
TGGTGGCGCCCGTGGAGGAAGCACCAGCCGCAGGCGTCGCAGCAGCAGAA
GCAGGAGCAGCAGCAGAGGTAGCAGCAGAAGCAGGAGCAGCAGAAGAAGT
GGCAGCCGCGCCTGTGGACCCTCCGGCGCTGGACGTTCCTACCATTGCCA
TTGATCCTCCTGTGCGCGGCGAGGAGGAGGCCGTGGCAGAGGTCGAGGCG
GAGATCGAGGAGGAGCCTACGCCGGAGGATGCGGCTGATGCCCCCCTGGT
GGAGACGACCACACGTCGTCTCCGCTCGAAGAAATAATCATTTCTT
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protein sequence of NO23G01300.1

>NO23G01300.1-protein ID=NO23G01300.1-protein|Name=NO23G01300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=934bp
MFIRHSTVTASVLAALAAANVAAAKPVTFANPTMNVITAVQEGPLSPGEC
TSYEAGDANAVLCMQEATLTAPDNLLLAGFLFNNGTAEICDLKLAPVNAP
GLTAFWPDWAGAGASYEKYFNREQMTMVGLTTIPKKDGTMPSFEVVGMRA
CGPKEGMENKLKGETEGSDVLLSRKIPLADSPMHPPVEKKEGEEKEVKEE
EVEEEKEAEKKEGEEKEGEEEEEEEEEEEEEKGVEKEEKEEEEEEEEEKE
EEGVEKEEEEEEEKEEEEEEEHEKDEDEDEEEEEEEEEEEEEEELEKEKK
EEGDKMKKEDKMKKKKEIRKKDKAMKKKKDKAMKKKKNKAKKGDEVVAGT
AAASAITIDPSVARKLQGKAVEEPLAEELTFEQALMKGECEIYSNGTATL
TLCLESATQPADNLALLKGFLYNNGSTAACDVKMRAVNAPGLIQLWPDWS
PTSAYEMYFNPKQVTSVGMTSTPNADESFPSLEVISFRPCAPTEDVAAAT
TPAAAAAAAAAPPAATGAAGADAAKLAGAFTTKKVPIENLVLPSVPDPDV
EDKRSLAVEINPVGSMYAPGGADKGLRAFKSDYDVTLDPNYQDGVEVTPL
NEDYLICKSFGSQHDNTLEMTVCLENAKTWHEKGIGRVVSSDLALVNTGT
QGVCNVRVYIEGMENELDHFPQLIDDNGFDTYPIFSDWYAPGRTTHMGSA
IPKAKGVPRFTVLSDFYACEQPDASIVHRRFRCTESTHKPNGAVKICVYT
DLKEWREENGERVVAVEGFLSNTGEAPLCNLTVDISNFTNALDYTGDWMP
TYTSYLDEMSTVKFSANVPYVKGRPRVMLKKYSICPHKVVAPVEEAPAAG
VAAAEAGAAAEVAAEAGAAEEVAAAPVDPPALDVPTIAIDPPVRGEEEAV
AEVEAEIEEEPTPEDAADAPLVETTTRRLRSKK*
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Synonyms
Publications