NO23G01200, NO23G01200 (gene) Nannochloropsis oceanica

Overview
NameNO23G01200
Unique NameNO23G01200
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2687
Alignment locationchr23:439090..442179 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:439090..442179 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700DNA-binding transcription factor activity
GO:0004519endonuclease activity
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0007275multicellular organism development
GO:0006355regulation of transcription, DNA-templated
GO:0090305nucleic acid phosphodiester bond hydrolysis
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom
IPR031112AP2-like_transcript_factor
IPR001471AP2/ERF_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
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BLAST of NO23G01200 vs. NCBI_GenBank
Match: XP_005854643.1 (homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526] >EKU21719.1 homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 71.2 bits (173), Expect = 1.300e-8
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 0 
Query:   25 SSTYRGVSWVKAKRRWNCSISVGNKTKSLGTYTDEEEAARAYDEAAIEQHYPTPILNFLPDGSLNPDRKRAM-KRTTKPKAPVP 108
            +S YRG+ W K  R+W   I    K  SLG + DE  AA+ YD  A ++ Y TP+LNFLP G LNP+RKR +  R+ +P+   P
Sbjct:   10 TSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRA-KELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPP 92
[Close]
BLAST of NO23G01200 vs. NCBI_GenBank
Match: XP_005853499.1 (homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526] >EKU22862.1 homing endonuclease rb16 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 71.2 bits (173), Expect = 1.300e-8
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 0 
Query:   25 SSTYRGVSWVKAKRRWNCSISVGNKTKSLGTYTDEEEAARAYDEAAIEQHYPTPILNFLPDGSLNPDRKRAM-KRTTKPKAPVP 108
            +S YRG+ W K  R+W   I    K  SLG + DE  AA+ YD  A ++ Y TP+LNFLP G LNP+RKR +  R+ +P+   P
Sbjct:   10 TSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRA-KELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPP 92
[Close]
BLAST of NO23G01200 vs. NCBI_GenBank
Match: EWM24765.1 (homing endonuclease rb16 2, partial [Nannochloropsis gaditana])

HSP 1 Score: 71.2 bits (173), Expect = 1.300e-8
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 0 
Query:   25 SSTYRGVSWVKAKRRWNCSISVGNKTKSLGTYTDEEEAARAYDEAAIEQHYPTPILNFLPDGSLNPDRKRAM-KRTTKPKAPVP 108
            +S YRG+ W K  R+W   I    K  SLG + DE  AA+ YD  A ++ Y TP+LNFLP G LNP+RKR +  R+ +P+   P
Sbjct:   10 TSDYRGIRWHKCNRKWEVQIKYRGKKLSLGYFDDELVAAQCYDRRA-KELYETPLLNFLPGGKLNPERKRRVDPRSLRPRRIPP 92
The following BLAST results are available for this feature:
BLAST of NO23G01200 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005854643.11.300e-845.24homing endonuclease rb16 2, partial [Nannochlorops... [more]
XP_005853499.11.300e-845.24homing endonuclease rb16 2, partial [Nannochlorops... [more]
EWM24765.11.300e-845.24homing endonuclease rb16 2, partial [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01200.1NO23G01200.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO23G01200.2NO23G01200.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|197611gene_8474Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01200.1NO23G01200.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO23G01200.2NO23G01200.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01200 ID=NO23G01200|Name=NO23G01200|organism=Nannochloropsis oceanica|type=gene|length=2687bp
GAGGGAGGGAGGGAGGGATCGAAAGAAGGGGGAAGGGAAGGAGGGATGGA
GGAAGTGGAGGAAGGGCCTGTGTGCATTTGTTGGTTTTCGCGTTTTCTAA
AATTGTTGCAAGAAAGCAACTGCGTTCTAATCCTCCCTCCCTTACTCCCT
CCTTACCGACAGCCTGAATCCCGATCGAAAGCGGGCCATGAAGCGGACCA
CCAAGCCCAAgtaagccccctccctccctccctcccttcctctccccctt
cctccctccctccctttggcgaccgtgccatcgatttcattctccctcac
atcactctcctcccctcttccccccctctccaaaatcgccgtataacagG
GCACCTGTGCCTACCACCGGGACGGGCCCTCGCTCGAAGAAGCAGCAGCC
GCGACGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCATCCACCCT
CACCTCCTTCTCCTCATCCCTACCCCCTTCTCCACGAACTCCAAGCAGCC
CACGGAGGGCGAGCAGCTGGATTTCCTCCCCCTCCTCATCCCCCCCTCCC
TCCTTCATGCAACCCCACGGCCCAGCCCACCCTCTTCCTCCGCCTCCCCC
CCTCCTCTTCCCCCTCCTCCATCCTCCTCTTCCAGGCAGTCCACCTTCCG
GGGCGTgttttggaacagcaccgcgggacgatggcgggcttgcatcagcg
taggaaacctctctcggtctctcggctactttcaaacggacgagGCGGCG
GCGCTGGCCTACGACAAGGCTGCGAGAGAGTTTCACGTGAACCCTGTTAC
CAACTTCTTGGACGATGGCAGgtacggccctccctccctccctccctccc
ccctccctcggccctggctccctttttccctcggtgggggaaagtgagta
gagagccaaataatcacctctccctctctccctccttccatctctttttc
tcccttctcaaacaaacgaaacgttgcgtgcgtttcaacataatcctcac
ccccttccacccctcccttcctccctccagCCTGAACGTCGACCGGAAGA
AGGTGGTGTGGTCGCAGCGTGTTTCACCCCAACAGCGAGACAAGAAAGCC
ATCGAAGAAAGGAAGAGGAAGGTGACGGAGCAGGAACAAGACCAGAAGCG
GCATCAAGgtgagggagggagggagagagagggggagggagggagggagg
gagggagggagggagggaggggtagcgtcggtgagtgtgggtgtggaagt
gtaatgggaatgtgggtgtcagaatgaggtgggcatgacgggaagggagg
gagggagggagagagggagagacgaaaggaggaagggagagatgaccagc
gaaagtgtaatacgtctctcttacctccaaacactcagtcctccttccct
ccctccctccctccctccctccctcgcagCCTTCTCTGAATTCTACGAGC
GCACTCGCGCTCCCCCTCAAACTGCCTCATCCTCCTCCACCACCACCCCC
GCCGCCGCCGCGGCTGCTGCTGCTGCTGCTGCTGCTCCTCTCCCTCCTCA
CCCTCCTCACCACTACCCTTACCAGCACCATCCCCATCCTTCCCTCTACG
AGAACCCCCCCCCCCTTCCTCCCTCCCTCCCTGCCTCCCTCCCCACCTCG
GGGCAGCACATTCTCATCACCATTATGCTTACCCgtcgtcttccttaggg
gaaggaggaggggagggaggagcgcccggccccccctccttccctccctc
tcaccctcacgcccaagAATTTTACCCTCACCCTCCACCGCCCCGGGGAG
GAAGAGGAGGAGGAGGAGGAGGGAAGGAGAGCGGGGCGGTCCCCCCCCAT
CACCACCTCCCCCTCCTGATTTCCAGCAGCAGCAATGGCAGCAACAGCAG
CAGCAGCAGTAGCGACCCTCCACCGCTTCCTCCTTCCCTCCCTCCTCCTC
ATTCGCATCATCATCACGCGCACCTTGCCTCCTCCTATCACCACCACCCT
GCTTACCCTTACGCGCCCTCCTTCTCTGCTCCTCCCTCCTCCTCCTCCTC
CTCCTCCTCCTCTTCCTCCTCCTCATCCCTTGCTCCTGCCGTTCCTCTCC
CTCCTCTCCCTCCTTCTTCTTCAACCTCTTCTTCCTCCTCTTCGTCCGCT
GTTGCTGCTCCCACCTCTTCATATTCCGTTCCTCCCTCCCTTCCTCCCCC
TCCCCCTCATCCATTCTACGACCACCGGTACAATCACTACTACCACCAAT
ACCACCATCACCCCCAGCAGCAGCAGCAGCAACGGCAGGAAGAGGAGGGC
CCACAACATAAAAAGCAATCACAACCGCCACAGCAGCAACTACACCATGA
TTCGGCCCATTCCTCCTCCCTTCCCCCTTCCTCCTCCTCCACCTCCTCCT
TCCTCCCCCCCCTCTCGCCTCCATCCCTTCTTCCTCCTCCTATCCCACCA
GCAGCACGGGAACCAGCCCCACCCACCCTGCTGCTGCTGCTGCTGCTTCT
GCTGCTGCTGCTGCTGCTGCTGCCACTGCTGCTGCCGGAGTTGCAGCTCA
ACACCAGCCGCCGCAGCAGCCTGCCGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGAAGAGTTGGGGGAGGACCGACCTCGCTTGGCGCGGCCTTGGGA
ATCGATGAGGAGTAATGAGGAGGGAAGGAGGGAATGA
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protein sequence of NO23G01200.1

>NO23G01200.1-protein ID=NO23G01200.1-protein|Name=NO23G01200.1|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MSTKINNGNKISSSGSGRSSSSMPSSTYRGVSWVKAKRRWNCSISVGNKT
KSLGTYTDEEEAARAYDEAAIEQHYPTPILNFLPDGSLNPDRKRAMKRTT
KPKAPVPTTGTGPRSKKQQPRRQQQQQQQQQQHHPPSPPSPHPYPLLHEL
QAAHGGRAAGFPPPPHPPLPPSCNPTAQPTLFLRLPPSSSPSSILLFQAV
HLPGRAAALAYDKAAREFHVNPVTNFLDDGSLNVDRKKVVWSQRVSPQQR
DKKAIEERKRKVTEQEQDQKRHQAFSEFYERTRAPPQTASSSSTTTPAAA
AAAAAAAAAPLPPHPPHHYPYQHHPHPSLYENPPPLPPSLPASLPTSGQH
ILITIMLTQFYPHPPPPRGGRGGGGGGKESGAVPPHHHLPLLISSSSNGS
NSSSSSSDPPPLPPSLPPPHSHHHHAHLASSYHHHPAYPYAPSFSAPPSS
SSSSSSSSSSSSLAPAVPLPPLPPSSSTSSSSSSSAVAAPTSSYSVPPSL
PPPPPHPFYDHRYNHYYHQYHHHPQQQQQQRQEEEGPQHKKQSQPPQQQL
HHDSAHSSSLPPSSSSTSSFLPPLSPPSLLPPPIPPAAREPAPPTLLLLL
LLLLLLLLLLPLLLPELQLNTSRRSSLPREGGREGGREEELGEDRPRLAR
PWESMRSNEEGRRE*
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protein sequence of NO23G01200.2

>NO23G01200.2-protein ID=NO23G01200.2-protein|Name=NO23G01200.2|organism=Nannochloropsis oceanica|type=polypeptide|length=570bp
MKRTTKPKAPVPTTGTGPRSKKQQPRRQQQQQQQQQQHHPPSPPSPHPYP
LLHELQAAHGGRAAGFPPPPHPPLPPSCNPTAQPTLFLRLPPSSSPSSIL
LFQAVHLPGRAAALAYDKAAREFHVNPVTNFLDDGSLNVDRKKVVWSQRV
SPQQRDKKAIEERKRKVTEQEQDQKRHQAFSEFYERTRAPPQTASSSSTT
TPAAAAAAAAAAAAPLPPHPPHHYPYQHHPHPSLYENPPPLPPSLPASLP
TSGQHILITIMLTQFYPHPPPPRGGRGGGGGGKESGAVPPHHHLPLLISS
SSNGSNSSSSSSDPPPLPPSLPPPHSHHHHAHLASSYHHHPAYPYAPSFS
APPSSSSSSSSSSSSSSLAPAVPLPPLPPSSSTSSSSSSSAVAAPTSSYS
VPPSLPPPPPHPFYDHRYNHYYHQYHHHPQQQQQQRQEEEGPQHKKQSQP
PQQQLHHDSAHSSSLPPSSSSTSSFLPPLSPPSLLPPPIPPAAREPAPPT
LLLLLLLLLLLLLLLPLLLPELQLNTSRRSSLPREGGREGGREEELGEDR
PRLARPWESMRSNEEGRRE*
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Synonyms
Publications