NO23G01070, NO23G01070 (gene) Nannochloropsis oceanica

Overview
NameNO23G01070
Unique NameNO23G01070
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length5782
Alignment locationchr23:393975..399756 +

Link to JBrowse

Properties
Property NameValue
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:393975..399756 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
[Close]
BLAST of NO23G01070 vs. NCBI_GenBank
Match: CCA14026.1 (heterogeneous nuclear ribonucleoprotein A1 putative [Albugo laibachii Nc14])

HSP 1 Score: 208.0 bits (528), Expect = 1.100e-49
Identity = 128/301 (42.52%), Postives = 151/301 (50.17%), Query Frame = 0 
Query:  151 KIFVGGLHWETTDEKLRKHFNIFGEVIDAVVMKDPISRRSRGFGFITFADAAAVDRVLSQDNHILDSRRVEAKRAVPRSETLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXSLGTAGGLNSLATNKIFVGGLHYETKNNDFRSYFSLFGRVLSAEVMFNRETHKSRGFGFVVFEDEASVDSCLSLPQHLIDGKMVEVKRAIPRNHVGSPSLPPSSSVPSSFGG 452
            KIF+GGL +ETTDEKLR +F  FG V DAVVMKDPISRRSRGFGFIT+AD A VDR L+Q +H+LDSRRVEAKRAVPR++                                                                                                             S   +GG    AT KIFVGGLHYETK+ +F+ YF  +G+V+SAEVMFNRET+KSRGFGFV+FE+E SVD  L+   H+IDGK+VEVKRA+PR  V      PS   PSS  G
Sbjct:    9 KIFIGGLSYETTDEKLRSYFGAFGSVTDAVVMKDPISRRSRGFGFITYADPACVDRALAQPSHVLDSRRVEAKRAVPRADN---------------------------------------------------------------------------------------SREVVSTTIKPSGPIVLPTLNSACASGG----ATKKIFVGGLHYETKDAEFKKYFQKYGKVVSAEVMFNRETNKSRGFGFVIFENEQSVDLILNERDHMIDGKLVEVKRAVPRTDVPPIRAIPSRETPSSATG 218
[Close]
BLAST of NO23G01070 vs. NCBI_GenBank
Match: XP_008890763.1 (hypothetical protein PPTG_00939 [Phytophthora parasitica INRA-310] >ETN24720.1 hypothetical protein PPTG_00939 [Phytophthora parasitica INRA-310])

HSP 1 Score: 206.8 bits (525), Expect = 2.500e-49
Identity = 146/310 (47.10%), Postives = 167/310 (53.87%), Query Frame = 0 
Query:  151 KIFVGGLHWETTDEKLRKHFNIFGEVIDAVVMKDPISRRSRGFGFITFADAAAVDRVLSQDNHILDSRRVEAKRAVPRSETLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXSLGTAGGLNSLATNKIFVGGLHYETKNNDFRSYFSLFGRVLSAEVMFNRETHKSRGFGFVVFEDEASVDSCLSLPQHLIDGKMVEVKRAIPRNHVGSPSLPPSSSVPSSFGGGRLSPSGFG 461
            KIF+GGL +ETTDEKLR +F  +G V DAVVMKDPISRRSRGFGFIT+AD + VDR L+Q NHILDSRRVEAKRAVPR+E++                                                                                             XXXXXXXXXXXX  +  T G     AT KIFVGGLHYETK+ DF+ YF  +G+V+SAEVMFNRET+KSRGFGFV+FE EASV+  L    H+IDGK VEVKRA+PR  V     PP  SV SS G     PSG G
Sbjct:    9 KIFIGGLSYETTDEKLRSYFGAYGTVTDAVVMKDPISRRSRGFGFITYADPSCVDRALAQPNHILDSRRVEAKRAVPRAESM-------------------------------------------------------------------------------------RDIGSGSSXXXXXXXXXXXXISANSTVG-----ATKKIFVGGLHYETKDADFKKYFMQYGKVVSAEVMFNRETNKSRGFGFVIFESEASVELVLQDKNHVIDGKSVEVKRAVPRTDV-----PPPRSV-SSRGNSFSGPSGPG 222
[Close]
BLAST of NO23G01070 vs. NCBI_GenBank
Match: ETI56355.1 (hypothetical protein F443_01104 [Phytophthora parasitica P1569] >ETK96127.1 hypothetical protein L915_01045 [Phytophthora parasitica] >ETK96128.1 hypothetical protein, variant [Phytophthora parasitica] >ETL49503.1 hypothetical protein L916_01028 [Phytophthora parasitica] >ETL49504.1 hypothetical protein, variant [Phytophthora parasitica] >ETP26136.1 hypothetical protein F441_01078 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 206.1 bits (523), Expect = 4.300e-49
Identity = 148/325 (45.54%), Postives = 170/325 (52.31%), Query Frame = 0 
Query:  151 KIFVGGLHWETTDEKLRKHFNIFGEVIDAVVMKDPISRRSRGFGFITFADAAAVDRVLSQDNHILDSRRVEAKRAVPRSETLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXSLGTAGGLNSLATNKIFVGGLHYETKNNDFRSYFSLFGRVLSAEVMFNRETHKSRGFGFVVFEDEASVDSCLSLPQHLIDGKMVEVKRAIPRNHVGSPSLPPSSSVPSSFGGGRLSPSGFGREAGREGVRDRGGPP 476
            KIF+GGL +ETTDEKLR +F  +G V DAVVMKDPISRRSRGFGFIT+AD + VDR L+Q NHILDSRRVEAKRAVPR+E++                                                                                             XXXXXXXXXXXX  +  T G     AT KIFVGGLHYETK+ DF+ YF  +G+V+SAEVMFNRET+KSRGFGFV+FE EASV+  L    H+IDGK VEVKRA+PR  V     PP  SV SS G     PSG       + V     PP
Sbjct:    9 KIFIGGLSYETTDEKLRSYFGAYGTVTDAVVMKDPISRRSRGFGFITYADPSCVDRALAQPNHILDSRRVEAKRAVPRAESM-------------------------------------------------------------------------------------RDIGSGSSXXXXXXXXXXXXISANSTVG-----ATKKIFVGGLHYETKDADFKKYFMQYGKVVSAEVMFNRETNKSRGFGFVIFESEASVELVLQDKNHVIDGKSVEVKRAVPRTDV-----PPPRSV-SSRGNSFSGPSGXXXVGSLDDVSTATTPP 237
[Close]
BLAST of NO23G01070 vs. NCBI_GenBank
Match: ETM02548.1 (hypothetical protein L917_00996 [Phytophthora parasitica] >ETM02549.1 hypothetical protein, variant [Phytophthora parasitica])

HSP 1 Score: 206.1 bits (523), Expect = 4.300e-49
Identity = 148/325 (45.54%), Postives = 170/325 (52.31%), Query Frame = 0 
Query:  151 KIFVGGLHWETTDEKLRKHFNIFGEVIDAVVMKDPISRRSRGFGFITFADAAAVDRVLSQDNHILDSRRVEAKRAVPRSETLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXSLGTAGGLNSLATNKIFVGGLHYETKNNDFRSYFSLFGRVLSAEVMFNRETHKSRGFGFVVFEDEASVDSCLSLPQHLIDGKMVEVKRAIPRNHVGSPSLPPSSSVPSSFGGGRLSPSGFGREAGREGVRDRGGPP 476
            KIF+GGL +ETTDEKLR +F  +G V DAVVMKDPISRRSRGFGFIT+AD + VDR L+Q NHILDSRRVEAKRAVPR+E++                                                                                             XXXXXXXXXXXX  +  T G     AT KIFVGGLHYETK+ DF+ YF  +G+V+SAEVMFNRET+KSRGFGFV+FE EASV+  L    H+IDGK VEVKRA+PR  V     PP  SV SS G     PSG       + V     PP
Sbjct:    9 KIFIGGLSYETTDEKLRSYFGAYGTVTDAVVMKDPISRRSRGFGFITYADPSCVDRALAQPNHILDSRRVEAKRAVPRAESM-------------------------------------------------------------------------------------RDIGSGSSXXXXXXXXXXXXISANSTVG-----ATKKIFVGGLHYETKDADFKKYFMQYGKVVSAEVMFNRETNKSRGFGFVIFESEASVELVLQDKNHVIDGKSVEVKRAVPRTDV-----PPPRSV-SSRGNSFSGPSGXXXVGSLDDVSTATTPP 237
[Close]
BLAST of NO23G01070 vs. NCBI_GenBank
Match: ETM55807.1 (hypothetical protein L914_01034 [Phytophthora parasitica] >ETM55808.1 hypothetical protein, variant [Phytophthora parasitica] >ETP54133.1 hypothetical protein F442_01053 [Phytophthora parasitica P10297])

HSP 1 Score: 206.1 bits (523), Expect = 4.300e-49
Identity = 148/325 (45.54%), Postives = 170/325 (52.31%), Query Frame = 0 
Query:  151 KIFVGGLHWETTDEKLRKHFNIFGEVIDAVVMKDPISRRSRGFGFITFADAAAVDRVLSQDNHILDSRRVEAKRAVPRSETLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXSLGTAGGLNSLATNKIFVGGLHYETKNNDFRSYFSLFGRVLSAEVMFNRETHKSRGFGFVVFEDEASVDSCLSLPQHLIDGKMVEVKRAIPRNHVGSPSLPPSSSVPSSFGGGRLSPSGFGREAGREGVRDRGGPP 476
            KIF+GGL +ETTDEKLR +F  +G V DAVVMKDPISRRSRGFGFIT+AD + VDR L+Q NHILDSRRVEAKRAVPR+E++                                                                                             XXXXXXXXXXXX  +  T G     AT KIFVGGLHYETK+ DF+ YF  +G+V+SAEVMFNRET+KSRGFGFV+FE EASV+  L    H+IDGK VEVKRA+PR  V     PP  SV SS G     PSG       + V     PP
Sbjct:    9 KIFIGGLSYETTDEKLRSYFGAYGTVTDAVVMKDPISRRSRGFGFITYADPSCVDRALAQPNHILDSRRVEAKRAVPRAESM-------------------------------------------------------------------------------------RDIGSGSSXXXXXXXXXXXXISANSTVG-----ATKKIFVGGLHYETKDADFKKYFMQYGKVVSAEVMFNRETNKSRGFGFVIFESEASVELVLQDKNHVIDGKSVEVKRAVPRTDV-----PPPRSV-SSRGNSFSGPSGXXXVGSLDDVSTATTPP 237
[Close]
BLAST of NO23G01070 vs. NCBI_GenBank
Match: ETO85084.1 (hypothetical protein F444_01111 [Phytophthora parasitica P1976])

HSP 1 Score: 206.1 bits (523), Expect = 4.300e-49
Identity = 148/325 (45.54%), Postives = 170/325 (52.31%), Query Frame = 0 
Query:  151 KIFVGGLHWETTDEKLRKHFNIFGEVIDAVVMKDPISRRSRGFGFITFADAAAVDRVLSQDNHILDSRRVEAKRAVPRSETLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXSLGTAGGLNSLATNKIFVGGLHYETKNNDFRSYFSLFGRVLSAEVMFNRETHKSRGFGFVVFEDEASVDSCLSLPQHLIDGKMVEVKRAIPRNHVGSPSLPPSSSVPSSFGGGRLSPSGFGREAGREGVRDRGGPP 476
            KIF+GGL +ETTDEKLR +F  +G V DAVVMKDPISRRSRGFGFIT+AD + VDR L+Q NHILDSRRVEAKRAVPR+E++                                                                                             XXXXXXXXXXXX  +  T G     AT KIFVGGLHYETK+ DF+ YF  +G+V+SAEVMFNRET+KSRGFGFV+FE EASV+  L    H+IDGK VEVKRA+PR  V     PP  SV SS G     PSG       + V     PP
Sbjct:    9 KIFIGGLSYETTDEKLRSYFGAYGTVTDAVVMKDPISRRSRGFGFITYADPSCVDRALAQPNHILDSRRVEAKRAVPRAESM-------------------------------------------------------------------------------------RDIGSGSSXXXXXXXXXXXXISANSTVG-----ATKKIFVGGLHYETKDADFKKYFMQYGKVVSAEVMFNRETNKSRGFGFVIFESEASVELVLQDKNHVIDGKSVEVKRAVPRTDV-----PPPRSV-SSRGNSFSGPSGXXXVGSLDDVSTATTPP 237
[Close]
BLAST of NO23G01070 vs. NCBI_GenBank
Match: XP_024586886.1 (heterogeneous nuclear ribonucleoprotein [Plasmopara halstedii] >CEG50517.1 heterogeneous nuclear ribonucleoprotein [Plasmopara halstedii])

HSP 1 Score: 206.1 bits (523), Expect = 4.300e-49
Identity = 136/325 (41.85%), Postives = 160/325 (49.23%), Query Frame = 0 
Query:  151 KIFVGGLHWETTDEKLRKHFNIFGEVIDAVVMKDPISRRSRGFGFITFADAAAVDRVLSQDNHILDSRRVEAKRAVPRSETLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXSLGTAGGLNSLATNKIFVGGLHYETKNNDFRSYFSLFGRVLSAEVMFNRETHKSRGFGFVVFEDEASVDSCLSLPQHLIDGKMVEVKRAIPRNHVGSPSLPPSSSVPSSFGGGRLSPSGFGREAGREGVRDRGGPP 476
            KIF+GGL +ETTDEKLR +F  +G V DAVVMKDPISRRSRGFGFIT+AD + VDR L+Q NHILDSRRVEAKRAVPR+E++                                                                                                              +A  L   AT KIFVGGLHYETK+ DF+ YF+ +G+V+SAEVMFNRET+KSRGFGFV+FE EASV+  L    H+IDGK VEVKRA+PR  V     PP  SV SS GG     SG G     + +     PP
Sbjct:    9 KIFIGGLSYETTDEKLRSYFGAYGTVTDAVVMKDPISRRSRGFGFITYADPSCVDRALAQPNHILDSRRVEAKRAVPRAESMRDIGGGSIINRGTGTNTICSI-----------------------------------------------------------------------------------------SASSLVG-ATKKIFVGGLHYETKDADFKKYFTQYGKVVSAEVMFNRETNKSRGFGFVIFESEASVEMVLQEANHVIDGKSVEVKRAVPRTDV-----PPPRSV-SSRGGSFSGLSGPGSVGSLDEISTATTPP 237
[Close]
BLAST of NO23G01070 vs. NCBI_GenBank
Match: XP_002908390.1 (heterogeneous nuclear ribonucleoprotein A1, putative [Phytophthora infestans T30-4] >EEY61473.1 heterogeneous nuclear ribonucleoprotein A1, putative [Phytophthora infestans T30-4])

HSP 1 Score: 203.4 bits (516), Expect = 2.800e-48
Identity = 143/304 (47.04%), Postives = 163/304 (53.62%), Query Frame = 0 
Query:  151 KIFVGGLHWETTDEKLRKHFNIFGEVIDAVVMKDPISRRSRGFGFITFADAAAVDRVLSQDNHILDSRRVEAKRAVPRSETLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXSLGTAGGLNSLATNKIFVGGLHYETKNNDFRSYFSLFGRVLSAEVMFNRETHKSRGFGFVVFEDEASVDSCLSLPQHLIDGKMVEVKRAIPRNHVGSPSLPPSSSVPS---SFGG 452
            KIF+GGL +ETTDEKLR +F  +G V DAVVMKDPISRRSRGFGFIT+AD   VDR L+Q NHILDSRRVEAKRAVPR+E++                                                                                               XXXXXXXXXXXX   +A G    AT KIFVGGLHYETK+ DF+ YF  +G+V+SAEVMFNRET+KSRGFGFV+FE EASV+  L    H+IDGK VEVKRA+PR  V     PP  SV S   SF G
Sbjct:    9 KIFIGGLSYETTDEKLRSYFGAYGTVTDAVVMKDPISRRSRGFGFITYADPLCVDRALAQPNHILDSRRVEAKRAVPRAESM--------------------------------------------------------------------------------------RDIGNSASSXXXXXXXXXXXXXXXSAVG----ATKKIFVGGLHYETKDADFKKYFMQYGKVVSAEVMFNRETNKSRGFGFVIFESEASVELVLQDKNHVIDGKSVEVKRAVPRTDV-----PPPRSVSSRGNSFSG 217
[Close]
BLAST of NO23G01070 vs. NCBI_GenBank
Match: XP_008871274.1 (hypothetical protein H310_07638 [Aphanomyces invadans] >ETW00249.1 hypothetical protein H310_07638 [Aphanomyces invadans])

HSP 1 Score: 199.1 bits (505), Expect = 5.200e-47
Identity = 139/295 (47.12%), Postives = 163/295 (55.25%), Query Frame = 0 
Query:  151 KIFVGGLHWETTDEKLRKHFNIFGEVIDAVVMKDPISRRSRGFGFITFADAAAVDRVLSQDNHILDSRRVEAKRAVPRSETLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXSLGTAGGLNSLATNKIFVGGLHYETKNNDFRSYFSLFGRVLSAEVMFNRETHKSRGFGFVVFEDEASVDSCLSLPQHLIDGKMVEVKRAIPRNHV--GSPSLPPSS 444
            KIF+GGL +ETTDEKLR +F  +G V DAVVMKDPISRRSRGFGFIT+AD + VDR L+Q NH+LDSRRVEAKRAVPR+E+                                                                                          XX XXXXXXXXXXXXXXX           AT KIFVGGLHYETK+ +F+ YFS +G+V+SAEVMFNRET+KSRGFGFV+FE E SVD  L    H++DGK VEVKRA+PR     G+PS P ++
Sbjct:   10 KIFIGGLSYETTDEKLRSYFGAYGTVTDAVVMKDPISRRSRGFGFITYADPSCVDRALAQPNHVLDSRRVEAKRAVPRAES----------------------------------------------------------------------------------ARDTSSATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATKKIFVGGLHYETKDAEFKKYFSQYGKVVSAEVMFNRETNKSRGFGFVIFESEHSVDLVLQDCGHVLDGKSVEVKRAVPRTDAPPGAPSGPATT 222
[Close]
BLAST of NO23G01070 vs. NCBI_GenBank
Match: OQR84639.1 (heterogeneous nuclear ribonucleoprotein A1 [Achlya hypogyna])

HSP 1 Score: 198.7 bits (504), Expect = 6.800e-47
Identity = 132/326 (40.49%), Postives = 160/326 (49.08%), Query Frame = 0 
Query:  151 KIFVGGLHWETTDEKLRKHFNIFGEVIDAVVMKDPISRRSRGFGFITFADAAAVDRVLSQDNHILDSRRVEAKRAVPRSETLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXXXXSLGTAGGLNSLATNKIFVGGLHYETKNNDFRSYFSLFGRVLSAEVMFNRETHKSRGFGFVVFEDEASVDSCLSLPQHLIDGKMVEVKRAIPRNHVGSPSLPPSSSVPSSFGGGRLSPSGFGREAGREGVRDRGGPPS 477
            KIF+GGL +ETTD+KLR +F+ +G V DAVVMKDPISRRSRGFGFIT+AD A VDR L+Q NH+LD+RRVEAKRAVPR+E+                                                                                                            S+ +A  +   AT KIFVGGLHYETK+ DF+ YF  FG+V+SAEVMFNRET+KSRGFGFV+FE EASV+  L    H+IDGK VEVKRA+PR    +P     S    S  GG  S    G+ +  E +  R  P S
Sbjct:   10 KIFIGGLSYETTDDKLRSYFSAYGTVTDAVVMKDPISRRSRGFGFITYADPACVDRALAQPNHVLDNRRVEAKRAVPRAES-------------------------------------------------------------------------------------------NRDTSSISTRGNVSAGSSVSSASAVG--ATKKIFVGGLHYETKDADFKKYFQQFGKVVSAEVMFNRETNKSRGFGFVIFETEASVELVLQDKTHVIDGKSVEVKRAVPR--TDAPPTTTGSVRSVSNRGGSFS----GQSSDHELLSPRSTPAS 236
The following BLAST results are available for this feature:
BLAST of NO23G01070 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
CCA14026.11.100e-4942.52heterogeneous nuclear ribonucleoprotein A1 putativ... [more]
XP_008890763.12.500e-4947.10hypothetical protein PPTG_00939 [Phytophthora para... [more]
ETI56355.14.300e-4945.54hypothetical protein F443_01104 [Phytophthora para... [more]
ETM02548.14.300e-4945.54hypothetical protein L917_00996 [Phytophthora para... [more]
ETM55807.14.300e-4945.54hypothetical protein L914_01034 [Phytophthora para... [more]
ETO85084.14.300e-4945.54hypothetical protein F444_01111 [Phytophthora para... [more]
XP_024586886.14.300e-4941.85heterogeneous nuclear ribonucleoprotein [Plasmopar... [more]
XP_002908390.12.800e-4847.04heterogeneous nuclear ribonucleoprotein A1, putati... [more]
XP_008871274.15.200e-4747.12hypothetical protein H310_07638 [Aphanomyces invad... [more]
OQR84639.16.800e-4740.49heterogeneous nuclear ribonucleoprotein A1 [Achlya... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006371NSK006371Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01070.1NO23G01070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|546186gene_8461Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01070.1NO23G01070.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01070 ID=NO23G01070|Name=NO23G01070|organism=Nannochloropsis oceanica|type=gene|length=5782bp
ATGCAATCGCGTTCCCAGgttggtttaatgagagaggaagcatttgatgt
acggtgtgcaccagttgatggttggttgttcccattttttttcatcaaaa
catttgaatgtcgagtgatcgctcccctccctcgcgcccaaagaagcgcc
tccttcatttctcccacataacaacgaaaaacactgcgtcacttgcatgg
cccttttcctccttcttcctacccttgtttctcgctctgatgctctttta
cccgcggttgcactcatgagatgccgtgctccactgggcctcggggaggg
aggggaggcttgagactctgacgcgcccccaaggagatgcttgccctcga
ccgaccttgacaacaaccactttgccgcctttttccctcctttttcttcc
tttcttcccgcactcccccagacaacagcggctcggcccaaggagctgtc
aacgtagagccctgtctattaaaccccccgcctggaatcaacgaggaagg
gccctctgttcaaaggggggcggcagtgctcgctacgcccttaccctatc
ttactaaattctttccccccccaccccgatcaacacagacacctacctca
ccacgggtggtcctgtcttgacttcttctcctattcctgcgcttgcatcg
ctgtcgacgcccactacaagcgtctacccccagAGCCTTTGGAGGACAGG
CCTCCACTGCCTAAAGCTGGACGCCTCCCTCGTCAGCGCCTGCGACCCTC
CTCCCCTTACCTCTTCCTCCGCCTCGGGCTTGTCTGCCCCTCCTTCTGGC
GACAGCAGCAACAGCAGTGGTAGCGCTGGCCCACCCCACTACTTTGTCTC
CCCTCCTACAGTCTCCGCCTCCTCAAACCCTGCCGACCCCTATCTGCAGC
AGCAGCGGCAGCAGCAACAACAGCAGGAGGAGCAGCAGCAGCATTACCAC
CACTACCAGTTTTCAGCTTACGGTTCCTACCCAGGAGGAGGGGACGAAGG
AGGTAGCAACAGTAGCAGCAGCAGCAGTAGAGGTGGAGGAATGGACAGCA
GCAGCATGCTCATGAATGAGATGATGCACTTGCCAAGgtaaggtggaaga
cgggagtgtggtaggggtgggtatgaccaagtgaatgttggagtagtagt
agcagcagcagcagcagcagcagcgcaaggggaagagaacgacgacgacg
aaatgaaagctgggaggacagaggggggagggagtgaggaacggggatgg
tcctgcttctcctgggccgactgagtcgccttcatggtgatggggcagtc
tatattaagtgaggaaggaagagagggaaggaagggcggtttcgagggga
tagcagcagcagcggaggacgagaaggagaagagggttagggatagacag
agagcaggtgtgacacccctataaaagtgtcctcacattctctctatccc
tccctcccgccccccctcgctccctcctacccttcccacagTAGTAGCAA
CAGAAAAAAGGCTGCCAACAAGATCTTCGTCGGGGGCCTCCATTGGGAGA
CGACAGACGgtgcgtcccctccctccctccctccctccctccttccttcc
ctgcaccgccctccgtttgtcttctcccccccactctcctctatccactc
tttcccatcaccattccctaggcatgacctgatctctttccctccctccc
cccccccacacagAAAAACTCCGCAAGCACTTCAACATCTTCGGAGAGGT
CATCGATGCCGTGGTCATGAAGGACCCCATATCCAGAAGgtaagtccctc
cctccctcccttcctaccccctccctccattcctcctcatccccgtgtcc
gcctggccgagcccgtcgttcggatgtccctcatctctcccccccccccg
cccccccaatatgctgacccctccctccctagATCCCGTGGCTTTGGGTT
CATCACCTTTGCGGACGCAGCCGCCGTCGACCGGGTCTTGTCCCAAGACA
ACCACATACTGGACTCGAGAAGAGTGGAGGCCAAGCGCGCCGTGCCTCGT
TCAGAGACTCTCCTGAAGGAGGGCGGGGTGGGGGGAGGGGGAGGAGGGGG
GATGGGACAGCCGCCTACCCCACCCATGAGGCCTTTGGCTTTTGTAGGGG
GAGGGGGAGGGAGGGAGGGAGGGGCGATGGGAGGAGGGGGAACTCACCAC
CCGCATCCAATTGGAGGCGGAGGAGGCGATTACGCGCACCAAGCCCAACC
ACCACCATTATCTTCACTACCGGCCTCATCCCGCCCTTCGTCCTCCTCCT
CTTCCTCCACCTCCACCACTCCCCCCCTCTCCCAATTCCTCCCACCCTCC
CTCCTCGCCTCCCTCCCGCCCACCCTCCCTCCTTCCCTCGGCACTGCGGG
GGGGTTGAATAGCCTGGCCACCAACAAAATCTTTGTAGGCGGGCTGCATT
ACGAAACGAAGAACAACGACTTCCGGAGCTATTTCTCCCTCTTCGGGCGT
GTGCTCTCCGCCGAGGTCATGTTCAACCGCGAGACGCACAAGAGgtccgt
ccttcccctccctcgctcccttctccaatccctcttttaattttaattaa
atctccaaaaatgtaacttaacacctcctcaactcaccctttactccctc
cctcccttcctcccttccttccttccttccagCCGTGGGTTCGGTTTCGT
CGTCTTCGAGGACGAGGCGAGCGTCGACTCATGCCTCTCCCTCCCCCAGC
ACCTCATCGACGGCAAGATGGTGGAAGTAAAGCGGGCCATTCCGAGGAAC
CACGTCGGGTCGCCTTCCCTCCCTCCCTCGTCCTCCGTCCCTTCCTCGTT
CGGAGGGGGGAGGTTGAGCCCGTCGGGATTTGGGAGGGAGGCAGGGAGGG
AGGGAGTGCGAGATAGAGGAGGTCCCCCTTCCTTTTCCTTGGGAGCAGGG
AGAGATAGAGGAGGAGGAGGAGGGGCCACGAGTTACGCGCAAGTGCTGCG
AGGGAGGGAGGGAGGGATGGGGATGTACGGACAGTATCAGCAGCAGCCGC
AGCAGCAACAGCCGCAGTTCCATCGTCAGCAGCAACAGCAGCAGCTGCAG
CAGTTGACGGAGGGGATGGGGGGAATCTCACTACTGCAAAAACAGGAGGC
ACTAGCCGCATTGTTAGGAGGGAGGGAAGTCGGTTTGGGTGGTGGTGGAG
GAGGAGGAGGAGGAGGAGGTGGAGGGTCCTGGACAAGCATTGAAGAGCTG
CTGGCCGGTATGGATGCTGAAGGCCAGGCAGGCAGGGAGGGAGGGAGGGA
GGGAGGGATGGGTGGTGGAGGAGGGTATGGAGCAGTAGCCGCGTTGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCATCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCATCTTGCTTTCGTTCAGGCGCAGGCTCA
AGCCCAGGTCTATCAGCAGCAGCATCGACTACTGCTGCAGCAGCAGCAGC
AGCATCAGTACCAGCGGCAGCAATTTCAGCAGCAAGAGCTGCCACCAGGG
CTGGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
GGGTTCAAACGTTTACTCATCCTATCAGCAGCAGCAGCCTCATCGACTAA
CACCACCAATACCAGCGGGAGGGGAAGGGAGGGAGGGAGGGAGAGAGGGA
GGGGAGGCGTCACGTTACCCCTTCGCGGTAGGAGAGCAGCAGCAGCAGCA
GCAACAGCAACAGCAACAGCAACAGCAGCAGAACCACGCCCCCGTACCGC
CAATAGAAAGGAGAAGTCCCCCTCTCCCTCCAGGAGGAGAGGGAGGGAGG
GAAGGAGGGCGGCGGACTTTGTCCTGGGAGCAAATGATATATTCCTCATC
GGCTTCGTCCTTGGATAGACCGGAGGAAGGAGGAGAGGGAGGGGGAGGGG
GAGGGGGAGAGGGAGGGGGAGGAAGGGTTTGAAGGAGTAGGGGCTGCTAG
AGGGAGGAGGGCGGGAAGGAGGGAGGGAGGGGAAAGTCTTTGTCGCCTTC
TCAACGATCTCCTTTAGTCATATCTTCCTTGATGTAATTGAAGATGGTTG
GAATGACGAACTTATTATGATTAATCAATTATTGATTGATTTTGATTAGT
CATTGACCATTATCATTTGTCTTATTTGATAAATTATTTAATTCATTAAA
TAGACATTTTGGGAGTCATTCATTACCTTTTCTCACGAGTAGTAATTGCA
GCTGACTTCATGATTGTACATGCAAAATCACCGCTTGGAGGACGATGAGG
AAGGGAGGGAGGGAAGTAGGGAAGAGAATTCACTATGTGTCATATTTTTA
ATAGGAAGGGAGTTCATCCGTAAAGTATCGAGCAGTCAGAAAGAAGACGA
CATTTTGTGCCCCTTCTTCTTTCCCGTCCTCTATCCCTCCCTCTTTTTCT
CCCCTCCGACGAGGACGGGAGAGGGAGGGGATGGGGTGGGGCGGGCAAGA
GGAGGAAGGAGGAAAGGAGCACCGCCCACCACTAACTACACGAGAAACCA
AAATAACTTCTCAAAAATGAAGCTCTAGATCATTGCCCACGTCAAGAAGA
GCAGCAGCGGCAGCAACAGCAGCAGCAGCCGCAGCAGCAGCAGCAGCAGA
AATAGGAGACCGACCACTAGGAATATGCTTAGGAGACGGGATTAATAAAT
GATAGCGGAAGATAGCGTTGTCCTCCCCCCCCTCTTTTCCCCCTCGCTCC
TTCCCTCCCCTCCCGTACATGCCTGTTAACAATCCGTTTACATATTTAAC
ACTATCAAAGGATGGGAACGAGGGCAAGAGCGAGGGAGGGTAAGAGAAGA
GGGAATGGCGGGGGGAGGAAGTACATGTGCTGTTTATACTTAGGGATGAG
TCAGTGAGAAGAAGATGAAGAAGGAATTGAGAGTAAGCTATTGCAAAGGG
CACTCGAAGAGGAAGAGGGGTGCACTTGAGCAAGAGCAAGGGTGAGGGGG
AAGTAGTCGAAAAAAGGCCACAGAAAGGACTTAGTGGTCGCAGCAGTCCG
AGCAGCCATAGCAGCCGCAGCTGGAAGAAGTATCAATTATCAAGGACAGC
AAGAACAAGGCGAGTATGAAGAGGGTGAAAACGTCGAAAGGGATTGACGG
GGGTTAAAGGGATTTCGGAAGAGAAAGGGGGAAAATAGATATTAATATGG
TGCCAAGGAGATGAAGAAAAAGAAGTAGAACGAGGATGCAGAAACGGTAA
AGAGAAAGAGGCGTTTGAGTATGACAAAACAAACAAACATCCAAAAGTAG
GGAGGGGTGATAGCAACAAGACATACAGGCGACGACTCACGGCGCCCTCT
TCCTCTATCTCTCTTCCTCCCTTCCTCCTTCTGTTTGTCTCATCCTTGCG
ATGAGGGCAGCTGTATCAAGGAAGTGAAGGAGGGAAGGAAGGAGATTGAG
AGCAACAAAACAGGGAAAAGGAAATTTCCTGTGCTCTTCCTTCCCCCCCC
TCGTTCCTTCACCCCCCCACCTTCCCTTCTACCTCTTTCGTAGAGAATGA
GCGACTGTTCATTTTGAGTGGATGGGACTTGACAGGAGGGGAGGGAGAGA
GAGGGAGGGAGGGAGAGAAAGATGCTGAGGTCAAATGAGCCTAAGACGAG
AAGGGGGAAGAGTCAAACATGCATACGCACGTCGATCGAGCATCACCCCA
CAAACATTTGTCAAATGATGGGAAGAAACCACGACACACACGAAAGGAAA
AGAAATTAGAAAGAATGGATCCACCACTTCCG
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protein sequence of NO23G01070.1

>NO23G01070.1-protein ID=NO23G01070.1-protein|Name=NO23G01070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=826bp
MQSRSQSLWRTGLHCLKLDASLVSACDPPPLTSSSASGLSAPPSGDSSNS
SGSAGPPHYFVSPPTVSASSNPADPYLQQQRQQQQQQEEQQQHYHHYQFS
AYGSYPGGGDEGGSNSSSSSSRGGGMDSSSMLMNEMMHLPSSSNRKKAAN
KIFVGGLHWETTDEKLRKHFNIFGEVIDAVVMKDPISRRSRGFGFITFAD
AAAVDRVLSQDNHILDSRRVEAKRAVPRSETLLKEGGVGGGGGGGMGQPP
TPPMRPLAFVGGGGGREGGAMGGGGTHHPHPIGGGGGDYAHQAQPPPLSS
LPASSRPSSSSSSSTSTTPPLSQFLPPSLLASLPPTLPPSLGTAGGLNSL
ATNKIFVGGLHYETKNNDFRSYFSLFGRVLSAEVMFNRETHKSRGFGFVV
FEDEASVDSCLSLPQHLIDGKMVEVKRAIPRNHVGSPSLPPSSSVPSSFG
GGRLSPSGFGREAGREGVRDRGGPPSFSLGAGRDRGGGGGATSYAQVLRG
REGGMGMYGQYQQQPQQQQPQFHRQQQQQQLQQLTEGMGGISLLQKQEAL
AALLGGREVGLGGGGGGGGGGGGGSWTSIEELLAGMDAEGQAGREGGREG
GMGGGGGYGAVAALQQQQQQQQQQHQQQQQQQQQQQQQQHLAFVQAQAQA
QVYQQQHRLLLQQQQQHQYQRQQFQQQELPPGLGGGGGGGGGGGGGGGGG
SNVYSSYQQQQPHRLTPPIPAGGEGREGGREGGEASRYPFAVGEQQQQQQ
QQQQQQQQQNHAPVPPIERRSPPLPPGGEGGREGGRRTLSWEQMIYSSSA
SSLDRPEEGGEGGGGGGGEGGGGRV*
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Synonyms
Publications