NO23G01050, NO23G01050 (gene) Nannochloropsis oceanica

Overview
NameNO23G01050
Unique NameNO23G01050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1635
Alignment locationchr23:389183..390817 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:389183..390817 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
BLAST of NO23G01050 vs. NCBI_GenBank
Match: EWM22935.1 (hypothetical protein Naga_100763g5 [Nannochloropsis gaditana])

HSP 1 Score: 107.5 bits (267), Expect = 5.800e-20
Identity = 61/107 (57.01%), Postives = 68/107 (63.55%), Query Frame = 0
Query:   13 GKRASSPGNKALFRGIVFSTLAVATGDYICQQLEGEDEDGREGEVLLGQEQLQLPQHQQPQIRATPISTTKKEWDKERTLRMAAATAVVMAPTSWMIVMRLEKFFPG 120
            GK +SS G KAL RG+V STLAV TGDYICQQLEG              E    P     Q  A P+S   K WDKERTLRMA ATA+VM+P SW+IVMRLE+ FPG
Sbjct:   47 GKYSSSAGFKALIRGVVCSTLAVGTGDYICQQLEGSPSK---------DEPAPRPDSLGKQTAAQPLSPEPKAWDKERTLRMATATALVMSPMSWVIVMRLERVFPG 144          
BLAST of NO23G01050 vs. NCBI_GenBank
Match: ACD54825.1 (integral membrane protein-like protein [Adineta vaga])

HSP 1 Score: 100.9 bits (250), Expect = 5.400e-18
Identity = 68/216 (31.48%), Postives = 108/216 (50.00%), Query Frame = 0
Query:    6 GAAAAIVGKRASSPGNKALFRGIVFSTLAVAT----GDYICQQLEGEDEDGREGEVLLGQEQLQLPQHQQPQIRATPISTTKKEWDKERTLRMAAATAVVMAPTSWMIVMRLEKFFPGNSTAAVLKKTLANGCLAPFMISLHFSTITALENHP--DARVHLEQRMNHNLLPTLASGVVFWPFVNILNFMFVRLENRPVVGAMAGVAWSIYMSKQVN 216
            G   A+   R++  G + L +  + ST+ + T    GD+ICQ L               Q   Q   +   QI ++ I      WD++R+L M  ++  V+AP ++ +   +E  FPG     +LKK L N  LAP  I L F ++T L      DA +    ++ ++L  T  +G  +WPFV+ +NF F+ L+ RP VG++AG  W+IY+S   N
Sbjct:    4 GFINAVKFTRSTQHGWRNLIKPYLISTIGIGTSATVGDFICQYL---------------QRNKQNKSNVTTQISSSCILPW---WDRQRSLVMCISSTFVVAPWNFTVSRIIENLFPGKQGIQILKKMLTNTLLAPIGICLVFVSVTLLNGRSFHDAEI----KITNDLWKTFFTGTCYWPFVSFINFRFIPLDYRPFVGSLAGAIWNIYISSIAN 197          
BLAST of NO23G01050 vs. NCBI_GenBank
Match: CBJ32920.1 (integral membrane protein-like protein [Ectocarpus siliculosus])

HSP 1 Score: 87.0 bits (214), Expect = 8.100e-14
Identity = 46/141 (32.62%), Postives = 76/141 (53.90%), Query Frame = 0
Query:   83 KKEWDKERTLRMAAATAVVMAPTSWMIVMRLEKFFPGNSTAAVLKKTLANGCLAPFMISLHFSTITALENHPDARVHLEQRMNHNLLPTLASGVVFWPFVNILNFMFVRLENRPVVGAMAGVAWSIYMSKQVNGKVKEGGK 224
            K  WD  RT+RM    A  + P S+   M  E+  PG S  AV+ K   +  + P M++  F+++T LE        +  +++ +  PTL + ++FWP V+++N  FV + +RPV  +  GV W++Y+S Q N    E G+
Sbjct:    9 KFAWDHARTMRMGITGAFFVTPASFAWNMYAERLAPGRSLRAVVTKLGVSVAVLPPMLAAQFASLTLLE-EGKTMGDVRTKLSRDFTPTLKNAILFWPVVSVINSAFVPVLSRPVFSSFVGVFWNVYISYQANHNGMEVGE 148          
BLAST of NO23G01050 vs. NCBI_GenBank
Match: XP_014156628.1 (hypothetical protein SARC_04997 [Sphaeroforma arctica JP610] >KNC82726.1 hypothetical protein SARC_04997 [Sphaeroforma arctica JP610])

HSP 1 Score: 79.0 bits (193), Expect = 2.200e-11
Identity = 45/128 (35.16%), Postives = 68/128 (53.12%), Query Frame = 0
Query:   86 WDKERTLRMAAATAVVMAPTSWMIVMRLEKFFPGNSTAAVLKKTLANGCLAPFMISLHFSTITALENHPDARVHLEQRMNHNLLPTLASGVVFWPFVNILNFMFVRLENRPVVGAMAGVAWSIYMSKQ 214
            +D  RT  MA   A +  P   ++V   E+ +PGNS  AV+ K   N   +P +I+   S    L     +   ++Q+++ + LPT  +G+ FWP VNI+ + FV L+ R   GA AG  WS Y+S Q
Sbjct:   50 YDYARTAAMALTGAAITGPLVHLMVASNERIYPGNSVRAVIVKASINLIWSPLLIAATLSGSMWLRG--KSNTEIKQKIDVDFLPTCVTGLGFWPPVNIVQYAFVPLKWRASAGACAGGIWSTYLSYQ 175          
BLAST of NO23G01050 vs. NCBI_GenBank
Match: EFJ35351.1 (hypothetical protein SELMODRAFT_79996, partial [Selaginella moellendorffii])

HSP 1 Score: 77.0 bits (188), Expect = 8.400e-11
Identity = 40/126 (31.75%), Postives = 67/126 (53.17%), Query Frame = 0
Query:   86 WDKERTLRMAAATAVVMAPTSWMIVMRLEKFFPGNSTAAVLKKTLANGCLAPFMISLHFSTITALENHPDARVHLEQRMNHNLLPTLASGVVFWPFVNILNFMFVRLENRPVVGAMAGVAWSIYMS 212
            WD  RTLRM+A   ++  PT  +    L K  PG    + LKK L          +  F +I AL    +    + QR+  +L+PTLASG+++WPF +++ F +V +  +P+V     + W++Y++
Sbjct:   65 WDHVRTLRMSAVGLLMSGPTLHLWFNFLNKILPGRDMISTLKKMLLGQTTYGPAFTATFFSINALAQGENG-AQIWQRLKRDLIPTLASGLMYWPFCDLITFRYVPVHLQPLVSNSFSLIWTVYLT 189          
BLAST of NO23G01050 vs. NCBI_GenBank
Match: XP_024524304.1 (protein Mpv17 [Selaginella moellendorffii])

HSP 1 Score: 77.0 bits (188), Expect = 8.400e-11
Identity = 40/126 (31.75%), Postives = 67/126 (53.17%), Query Frame = 0
Query:   86 WDKERTLRMAAATAVVMAPTSWMIVMRLEKFFPGNSTAAVLKKTLANGCLAPFMISLHFSTITALENHPDARVHLEQRMNHNLLPTLASGVVFWPFVNILNFMFVRLENRPVVGAMAGVAWSIYMS 212
            WD  RTLRM+A   ++  PT  +    L K  PG    + LKK L          +  F +I AL    +    + QR+  +L+PTLASG+++WPF +++ F +V +  +P+V     + W++Y++
Sbjct:  126 WDHVRTLRMSAVGLLMSGPTLHLWFNFLNKILPGRDMISTLKKMLLGQTTYGPAFTATFFSINALAQGENG-AQIWQRLKRDLIPTLASGLMYWPFCDLITFRYVPVHLQPLVSNSFSLIWTVYLT 250          
BLAST of NO23G01050 vs. NCBI_GenBank
Match: EFJ10609.1 (hypothetical protein SELMODRAFT_127764, partial [Selaginella moellendorffii])

HSP 1 Score: 75.1 bits (183), Expect = 3.200e-10
Identity = 39/126 (30.95%), Postives = 66/126 (52.38%), Query Frame = 0
Query:   86 WDKERTLRMAAATAVVMAPTSWMIVMRLEKFFPGNSTAAVLKKTLANGCLAPFMISLHFSTITALENHPDARVHLEQRMNHNLLPTLASGVVFWPFVNILNFMFVRLENRPVVGAMAGVAWSIYMS 212
            WD  RTLRM+A   ++  PT  +    L K  PG    + LKK L          +  F +I AL    +    +  R+  +L+PTLASG+++WPF +++ F +V +  +P+V     + W++Y++
Sbjct:   65 WDHVRTLRMSAVGLLMSGPTLHLWFNFLNKILPGRDMISTLKKMLLGQTTYGPAFTATFFSINALAQGENG-AQIWHRLKRDLIPTLASGLMYWPFCDLITFRYVPVHLQPLVSNSFSLIWTVYLT 189          
BLAST of NO23G01050 vs. NCBI_GenBank
Match: XP_024517761.1 (PXMP2/4 family protein 3 [Selaginella moellendorffii])

HSP 1 Score: 75.1 bits (183), Expect = 3.200e-10
Identity = 39/126 (30.95%), Postives = 66/126 (52.38%), Query Frame = 0
Query:   86 WDKERTLRMAAATAVVMAPTSWMIVMRLEKFFPGNSTAAVLKKTLANGCLAPFMISLHFSTITALENHPDARVHLEQRMNHNLLPTLASGVVFWPFVNILNFMFVRLENRPVVGAMAGVAWSIYMS 212
            WD  RTLRM+A   ++  PT  +    L K  PG    + LKK L          +  F +I AL    +    +  R+  +L+PTLASG+++WPF +++ F +V +  +P+V     + W++Y++
Sbjct:  123 WDHVRTLRMSAVGLLMSGPTLHLWFNFLNKILPGRDMISTLKKMLLGQTTYGPAFTATFFSINALAQGENG-AQIWHRLKRDLIPTLASGLMYWPFCDLITFRYVPVHLQPLVSNSFSLIWTVYLT 247          
BLAST of NO23G01050 vs. NCBI_GenBank
Match: XP_021846420.1 (protein SYM1-like [Spinacia oleracea])

HSP 1 Score: 74.7 bits (182), Expect = 4.200e-10
Identity = 39/127 (30.71%), Postives = 66/127 (51.97%), Query Frame = 0
Query:   86 WDKERTLRMAAATAVVMAPTSWMIVMRLEKFFPGNSTAAVLKK-TLANGCLAPFMISLHFSTITALENHPDARVHLEQRMNHNLLPTLASGVVFWPFVNILNFMFVRLENRPVVGAMAGVAWSIYMS 212
            +D  RTLR+A    ++M P+  +    L + FPG      +KK  +      P M S+ FS   AL+   + R  +  R+  +LLPTL  G+++WP  + L F F+ +  +P+V +     W+IY++
Sbjct:  130 FDSVRTLRIAGYGLLIMGPSQHLWFNFLSRVFPGRDVFTTVKKIVMGQSIYGPIMNSIFFSYNAALQG--ETREEVVARLKRDLLPTLMKGLMYWPLCDFLTFKFIPVHLQPLVNSSFAYLWTIYLT 254          
BLAST of NO23G01050 vs. NCBI_GenBank
Match: PNX78396.1 (PXMP2/4 family protein 4-like, partial [Trifolium pratense])

HSP 1 Score: 74.3 bits (181), Expect = 5.500e-10
Identity = 41/131 (31.30%), Postives = 65/131 (49.62%), Query Frame = 0
Query:   82 TKKEWDKERTLRMAAATAVVMAPTSWMIVMRLEKFFPGNSTAAVLKK-TLANGCLAPFMISLHFSTITALENHPDARVHLEQRMNHNLLPTLASGVVFWPFVNILNFMFVRLENRPVVGAMAGVAWSIYMS 212
            + K  D  RTLRMA    +++ PT       + K FPG    + LKK  +      P M  + FS   AL+   D  +    R+  +L+PTL +GV++WP  + + F F+ +  +P+V       W+IYM+
Sbjct:   28 SSKSLDFIRTLRMAGYGMIILGPTLHFWFNFVSKLFPGRDLFSTLKKMVMGQSIYGPAMTVIFFSLNAALQGENDKEI--VARLKRDLVPTLLNGVMYWPICDFITFRFIPVHLQPLVSNSFSYLWTIYMT 156          
The following BLAST results are available for this feature:
BLAST of NO23G01050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22935.15.800e-2057.01hypothetical protein Naga_100763g5 [Nannochloropsi... [more]
ACD54825.15.400e-1831.48integral membrane protein-like protein [Adineta va... [more]
CBJ32920.18.100e-1432.62integral membrane protein-like protein [Ectocarpus... [more]
XP_014156628.12.200e-1135.16hypothetical protein SARC_04997 [Sphaeroforma arct... [more]
EFJ35351.18.400e-1131.75hypothetical protein SELMODRAFT_79996, partial [Se... [more]
XP_024524304.18.400e-1131.75protein Mpv17 [Selaginella moellendorffii][more]
EFJ10609.13.200e-1030.95hypothetical protein SELMODRAFT_127764, partial [S... [more]
XP_024517761.13.200e-1030.95PXMP2/4 family protein 3 [Selaginella moellendorff... [more]
XP_021846420.14.200e-1030.71protein SYM1-like [Spinacia oleracea][more]
PNX78396.15.500e-1031.30PXMP2/4 family protein 4-like, partial [Trifolium ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006365NSK006365Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01050.1NO23G01050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602122gene_8458Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100763g5gene7512Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01050.1NO23G01050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01050 ID=NO23G01050|Name=NO23G01050|organism=Nannochloropsis oceanica|type=gene|length=1635bp
TGCTCAGCGACTTGCTTCCCCTTCCATTGAGTTGTACACACTTACAAGCC
CACCACACCAATCCCTCAAGCTCCCACGGCGTCATTTTTATTGTCCTGAA
TTGATCTACTAAAATTGTTACTATGCCGGACGCTGAGCAAGATTGACCAT
TCAAGACGATCATGCCTCCCCGAGCCGACCCTTTTCTAGGCATCCCTCCT
CGCAAGAACACTCCTTTCCAAAACTACATTCCACGCCATGCTCACAGCCA
CAAACACCACGATCCTGCATAAATACAGAAGCACTTGTTGACCTGCCTGC
CGGCCAGCTCCAGCTCCGCTCCCTCCTCTCAGCCTTCCCGACCATGGCTG
CCTCTGCTGGAGCCGCTGCAGCCATTGTCGGCAAACGCGCCTCGAGTCCA
GGCAACAAAGCCTTGTTTCGGGGCATTGTTTTTTCGACTCTTGCTGTGGC
GACAGGCGATTATATTTGCCAGCAACTCGAAGGAGAGGATGAGGACGGGA
GGGAGGGCGAGGTCCTGCTTGGACAAGAACAGCTCCAGCTACCACAGCAC
CAGCAACCACAAATAAGAGCAACTCCAATATCAACAACCAAAAAAGAATG
GGACAAGGAAAGGACATTGAGAATGGCAGCAGCAACGGCAGTAGTGATGG
CTCCAACGTCGTGGATGATCGTTATGCGACTAGAAAAGTTTTTCCCAGgt
aggtcttgagggattgctgtagggatggagggaggtagggttggatcgga
cgttttgtgttatagcgcatcccataagattccttacagatggatcgtga
gggagtgagggagggaaggcaagagggggggaatgaaggcgatatggtaa
agctcaccaaaactccaaccatttccaattccatagccgcggtcgtgaag
aaaacactgcgccgacggtcgcctggctcctttacgatttctcaccctcc
attctccaccatcagtttctgacatagcctcaaaatatctccctccttcc
ctcctgctcttcaatccccctcagGTAATTCGACTGCGGCAGTTCTGAAG
AAAACGTTGGCCAACGGGTGCCTGGCTCCCTTCATGATCTCCCTCCATTT
TTCCACCATCACCGCCTTGGAAAATCATCCGGATGCCCGCGTTCACCTCG
AGCAACGGATGAACCACAACTTGCTTCCTACCCTAGCGAGTGGGGTGGTG
TTTTGGCCCTTTGTCAATATATTAAATTTCATGTTTGTGAGACTGGAAAA
CCGACCGGTGGTGGGAGCGATGGCGGGGGTGGCCTGGTCCATCTACATGA
GTAAGCAGGTGAATGGAAAGGTGAAGGAAGGGGGGAAAGAGGGAGGATTG
AGAAACACCACCTAGCTCGGAGTGTCTGCCGGTCGTGGGAGGAGCCACGG
TGTGTGCGGTGCCGGCATGGTTTATGTGATCGGTCGTTTTTGTGGGCAGA
TGGATTGTCAATAGGAAGGGGAAATGATGTCGACGACAACGCTTTTCAGT
AAAGCTGTGAGTTGATGGGGAAGATAAATGGGAAGAAAGTGCTGAATAGG
GTAGGGAATACGTGCGAAAAGAGACAGTTTTAGAAAGAGGGAGCGCGACG
GAGTGAGGGAGAGAAAGTGTGTGTGAGAGGGGGGG
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protein sequence of NO23G01050.1

>NO23G01050.1-protein ID=NO23G01050.1-protein|Name=NO23G01050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MAASAGAAAAIVGKRASSPGNKALFRGIVFSTLAVATGDYICQQLEGEDE
DGREGEVLLGQEQLQLPQHQQPQIRATPISTTKKEWDKERTLRMAAATAV
VMAPTSWMIVMRLEKFFPGNSTAAVLKKTLANGCLAPFMISLHFSTITAL
ENHPDARVHLEQRMNHNLLPTLASGVVFWPFVNILNFMFVRLENRPVVGA
MAGVAWSIYMSKQVNGKVKEGGKEGGLRNTT*
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Synonyms
Publications