NO23G01020, NO23G01020 (gene) Nannochloropsis oceanica

Overview
NameNO23G01020
Unique NameNO23G01020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4077
Alignment locationchr23:380189..384265 -

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:380189..384265 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long
Homology
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BLAST of NO23G01020 vs. NCBI_GenBank
Match: EWM22939.1 (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 321.2 bits (822), Expect = 3.000e-84
Identity = 170/247 (68.83%), Postives = 196/247 (79.35%), Query Frame = 0 
Query:   28 GARGASPLTRSPPSS--TSSPTSLHAQALLRPTESTTSSDMGTRLLADLKVAAQAGDSNKAFEILNSLDGQSLPKTIVHFNRVLKACVEGKEMGKIEGVLEQMNGSGAMMDEVTVKLLVNAYVSQGKLAEAVDVFEQAREEEVIGAVDPSLYDTVIGAYRQQGAFEKAMDLCDEMRFLRLNPTKEGYAFIATVAVKDGKTYLINRTLETMKQEGFAVSEIEYVKGIIEKELPENLKHQVNGQVVAKA 273
            G RG SPLTRS P+S   S P+ L AQAL RP EST   D GTR+LA+LK AAQAGDS KA ++L SLD  ++PKT+VHFNR LKACV+GK + ++ GVLEQMN SG   DE TVKLLV+ Y  QGKLAEA+DVFEQARE+E+IG VD +LYD VIGAYR+  A EKAMDLCDEMR LRL PTKEGYAFIATVAV+DGKTYLI RTLETM+ EGF   E+ YV+ +IE+ELPE LKHQV G+VVA A
Sbjct:    2 GPRGLSPLTRSGPTSPPASPPSRLFAQALTRPAEST---DQGTRVLAELKSAAQAGDSAKALDLLKSLDDAAVPKTVVHFNRALKACVQGKALDQLPGVLEQMNASGTAWDETTVKLLVSTYAEQGKLAEALDVFEQAREDELIGTVDRALYDVVIGAYRRTDALEKAMDLCDEMRSLRLAPTKEGYAFIATVAVRDGKTYLIARTLETMRAEGFEEGEVAYVQKVIEEELPEGLKHQVGGKVVAPA 245
The following BLAST results are available for this feature:
BLAST of NO23G01020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22939.13.000e-8468.83Pentatricopeptide repeat containing protein [Nanno... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G01020.1NO23G01020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602109gene_8455Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101189g1gene7509Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G01020.1NO23G01020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G01020 ID=NO23G01020|Name=NO23G01020|organism=Nannochloropsis oceanica|type=gene|length=4077bp
CTTGGAAGCCGATTCCCCCCCTCCCCCCCTCAAGCCCTGTAAACTATGGT
GCTTCTGTCCTTTACTGCCTGTCATCGCACACCAGCATTTAAAAACACTA
TGTCCGCTGAGTATAAAAAGACAATTTTATTTACTGTATCCTTGGTCTTA
TTGATTACTTGACCGATTACGTACAAAACAATTGCGGTAAAATATACTCT
CAACCTCCCCCAACGCGAACGGCCCAAGCCTCAGTACGCGATCGCACTAA
AGAGACTATCGTTTTTAATTCTACACACCCTATACTGTCAGCTCGTCTTC
AAATTGTCCGTACAGATTAAATGTATCGAATGCTGCTGAAGTTTGATCAA
ATAAAATCCAGGTATTGGTGCATTGCCCCTTCTTCGTTCGTCTCGCGATC
GAGTCGCGTTTTCTTCTCTCGTTGTGCACGGCATACGACAAAAAGCAAAG
CTTTCGGGTCGTGGAAATAAAGTGGGGACAGGTACCGATCACCCGCATGG
AGTGAATGACAATCTACGTCCTTATGCACTTTGTTTGACATGCAATGCTA
GCCCCACCTCGAAAAGAGACAAGGAAGAAGGGTCCTTCAATTCCCTCTGC
CACACCCCCAGCACTCGCACAGAGCGTGTGGAAAACGAGTGGCTCTGAAG
GAGCGAGGGAGAGCGAGCAGCAACATAACTCACGCACCACCATCATCCAT
TTGCCTGCCTGTCTTTAAGGCCTGGACATCTTCCCAATTCTGACCGGCTT
ATTATGTGTGTGTCAGAGATAGATACATCTTGTTTCATGCCCAATCAATA
TCTTGACTTTCCTTTCCCCTGCAAACAAGACCCTGACTCTGGTCTCCCAA
GACGAGCCGCGAGGCAAGAGGGGCAACTGCAATTCGTACTGACCACACTT
AGCGTGGACAGATACCCACACAAAACCAGGCGGCCCCTTATTGATAATCA
GTACACAGGGTGCAAATGATGGACAATGTCAACGCTGCGTCTGCATGTCC
TCCTCCCTGCTCACATGCTGAGGGTGCAACAGCAGAGGCACAGGAAGAGC
CACTGCTGGCGAGGGAGGGGGTGGAAGACGTGTCGTTAACATGCGTGCTT
TCCCATCAACAGCACCCGCCTCTTCTTCTTTGCCACGATCGCAAATGGCC
TGAAACACACTCTGACTCACGTACATTGCCCACCCATTCGTACTCATACC
ACTTCACAGGCCCGGTCGAAACGACAGCCTAAGATACTTCCTACCCAGAC
AAAGGATGCAGCAACGTCTGGTCACCCTTGTGGGATGCTTGTCGGTCATG
CTGGGCGGGAGCAATgtacgtgacagaggacgaagtagttggagggcagg
cgaggggagagatagaaagggaagatggagtggggaaaaagaggtcggcc
gatccgatttcctggtttctgtcatcatcaggctcacggcgacgcctgct
tgacagagggaaaggaagggttggtggaggggtggagggaccagcttttt
cgcacgcacactggtggtggactgaatcatggcattggcgtgtggtaatt
gggccgaaagcagatgacactgagaaaagcaaacgtcatcgcacccacct
caggagtgacacatactcacacctcctcccttccttccctccttctcccc
cttcctttctcccaccacaaatgaaaacagACTGTCCTCGGCTTCGTGTG
GGGAGCCCGTGGCGCCTCACCACTAACACGCAGCCCGCCCTCCTCTACCT
CCTCCCCTACCTCCCTTCACGCCCAAGCCCTCCTCCGACCCACAGAGAGC
ACAACTTCCTCCGACATGGGCACGCGGCTGCTAGCTGACTTAAAGGTGGC
AGCACAAGCAGGAGACTCGAACAAGGCGTTTGAAATCTTGAATTCTTTGG
ACGGGCAGTCCTTGCCTAAGACCATCGTGCACTTCAACCGCGTTCTGAAG
GCCTGTGTGGAGGGGAAGGAAATGGGGAAGATCGAGGGGGTGTTGGAGCA
GATGAATGGCAGCGGGGCGATGATGGACGAGGTGACGGTGAAGCTACTGG
TGAACGCTTACGTTTCGCAAGGCAAGCTGGCTGAGGCGGTGGATGTCTTC
GAACAGGCACGGGAGGAGGAGGTGATTGGCGCTGTGGATCCGTCCCTGTA
CGACACCGTCATTGGTGCCTACAGGCAGCAGGGCGCCTTCGAGAAGGCCA
TGGACCTTTGCGATGAGATGAGgtgggttagactccctccctccctctca
cccacctccgctttcttctccacgtccctccacaacatctcacacccctt
cctccctctcatcctccctccctctccatcctcagGTTCTTGCGGTTGAA
CCCGACCAAGGAGGGTTATGCGTTTATCGCCACAGTTGCTGTGAAGGATG
GGAAGACCTACCTGATCAACCGCACCCTCGAAACGATGAAGCAGGAGGGG
TTTGCCGTGAGTGAGATCGAGTACGTCAAGGGCATCATTGAGAAGGAGCT
GCCGGAGAACCTGAAGCACCAGGTAAACGGTCAGGTCGTCGCCAAGGCAT
GAAGGGAAGGCGGGAGAGAATGAGGGAAATAGGGGGGGACATGATGGTGC
GAAGGCGGATTTTGGGAGGGAAGGAAGGGAAGGAGACGAGGAGAAGGGCA
GGGACGACGAGGAAGCGAGTGGAGATGTGGAGATATGACACAAAGTGTGA
CTCACACTTCAAAGGAAATCACGCGCAACAGCAGCAGACAGCAACTGTGG
CAAGAGCATGAACGAGAGAGAGAGGGAGAGACCGAGAGCGCAGTAGAAAC
GCACGCGTCGGCGCGAAAAACATTGTTGAGTAATGGAAGGAGCAAGACGT
GACTTGAAACTAGCAAGCCTTTTTATATAACACGGAAGGCGAAGGAAAGA
AGGTTGAGAAAGGGGATGAGGGACAGGGAGGGAGGGCAGGTAGGGAGGAA
GGGGGGGGAATAAAAAATAACTTTAAAAAGGAAACAAAAGGAGATACACA
CACATATGGATGACCACCAGGAGAAGCAAAGGGAGGGAGCGGGCACGTGG
CTGGTGTTTGCGTGCCCCCTCTGGTCGCAAGTTGGATCCCCGGGGGTTAT
GGGCGTGTGTGTGCGTGAGGCGAGAGAGCTAAAAAGGAGAAGAAGATGTG
TCCCATGAAAGAAAGAAGAGAAAGAAAGATCAGAAATACATCTTAGAGTT
GGATTGGCCTGAAAGCGTAAAAAACGTCTTTTTTTCGCCTTCAAGCCTGT
CCCTGCTTTTTTTCCTGGACAGGGTACGTGAGTGACGTAATAAGAGACGG
TGGTGTGTCGGGAGTTAAAACCAAAAAGGGTGACGGGAAGAGAGCTCCCT
CTTGATCTCGCTGCCTCTGCATATTGATAACGGATGTATCACGAAAGGAT
CATCATCTCCTCGAATGCTCGCCTCTTGCTGCTTGCACGAGAAGGATTGT
CCTGACAAAAGACAAGAGGAGGGAGGGAGAAGATTGAGGAGGTGAGTCGC
TTGTTGGATTTGTTGGATGTGGATCAGAATGTACTTGTCGAGGTTTTCCG
GTTGTTGGGAAGCTCGATGGACGGGAAGGGGGGGAGAGGAGGAAGAGGAG
ACAAAGGAGGGGGTGGATAAAGAGGAGGAGGAGGTGGACGACGACGGCGG
GAAGGACGGAGAGTAAGAGCAGGACAGAGAGGGGAGCGTAGTCAGGAAGG
GGAATATAACTTGCAGGAGGAGGATTGCGAATGCGTCCTCGTCTTCGGAG
GGTGAGATGCTAGTGAGGCGAGAGGCGTTGAAGAGGCGGGCGTCGTCGAA
GCTGATTTTGGGGAGGGAGAGAGGGAGGGGGCGTCGTTCTCAGTGTTCAG
TTAGAAGATATGTGAATAAATATCCGTGCGGCGAAGTTGGATTTGAACGA
GACTACCATAATGCGAGCATTTTACACTTTCAATAATAAGGGGGGAAACA
ATTATTATGCAAGGAGAAGTAGAAGAAATAGAAGAAGGAAAAGAAGAAAA
GCATATCAACAACCACAATAACCGTAAAAGCGACTGGAAGACCAACTAGT
AGACGACCTATATACATATACAATTAT
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protein sequence of NO23G01020.1

>NO23G01020.1-protein ID=NO23G01020.1-protein|Name=NO23G01020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MQQRLVTLVGCLSVMLGGSNTVLGFVWGARGASPLTRSPPSSTSSPTSLH
AQALLRPTESTTSSDMGTRLLADLKVAAQAGDSNKAFEILNSLDGQSLPK
TIVHFNRVLKACVEGKEMGKIEGVLEQMNGSGAMMDEVTVKLLVNAYVSQ
GKLAEAVDVFEQAREEEVIGAVDPSLYDTVIGAYRQQGAFEKAMDLCDEM
RFLRLNPTKEGYAFIATVAVKDGKTYLINRTLETMKQEGFAVSEIEYVKG
IIEKELPENLKHQVNGQVVAKA*
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Synonyms
Publications