NO23G00870, NO23G00870 (gene) Nannochloropsis oceanica

Overview
NameNO23G00870
Unique NameNO23G00870
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1762
Alignment locationchr23:323962..325723 +

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:323962..325723 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR018790DUF2358
Homology
BLAST of NO23G00870 vs. NCBI_GenBank
Match: EWM22953.1 (Protein of unknown function DUF2358 [Nannochloropsis gaditana])

HSP 1 Score: 329.3 bits (843), Expect = 1.900e-86
Identity = 162/194 (83.51%), Postives = 181/194 (93.30%), Query Frame = 0
Query:  266 ASGDLLRAFPSMTEQTPPPSPRLQGDDDKRNQQGGNNFTINLGRALDHLRVDVPLLFDREPDLSIYTEDVRLRDEARVYASGKFMYQMVYFSLRLAKVFMPMPPLVEVLNIRWCPARQCIEVRFQIRVDTLSDSLYFDAVSVYRVNAKGLIYEHLIEKIIRNDLSEKPSMVSLFYATRQVLIGGNQPIPDSVGM 460
            A G++ +AFPSMTEQ PPPSP++QGD  + N+   +NFTINLG+ALDHLRVDVPLLF+REPDLSIYTEDVRLRD AR+YASGKFMYQMVYFSLR+A++FMPMPPLVEVLNIRWCPARQ IEVRFQIRVDTLSDSLYFDAVSVYRVNA+GLIYEHLIEK+IRNDLSEKPS+V+LFYATRQVL+GG  PIPDSVGM
Sbjct:  309 ARGEVRQAFPSMTEQ-PPPSPQVQGDGPEPNR--NDNFTINLGKALDHLRVDVPLLFEREPDLSIYTEDVRLRDHARIYASGKFMYQMVYFSLRVARIFMPMPPLVEVLNIRWCPARQSIEVRFQIRVDTLSDSLYFDAVSVYRVNARGLIYEHLIEKVIRNDLSEKPSIVNLFYATRQVLVGGKVPIPDSVGM 499          
BLAST of NO23G00870 vs. NCBI_GenBank
Match: KOO23847.1 (hypothetical protein Ctob_000770 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 78.6 bits (192), Expect = 5.700e-11
Identity = 64/207 (30.92%), Postives = 100/207 (48.31%), Query Frame = 0
Query:  272 RAFPSMTEQTPPPSPRLQGDDDKRNQQGGNNFTINLGRALDHLRVDVPLLFDREPDLSIYTEDVRLRDEARVYASGKFMYQMVYFSLRLAKVFMPMPPLVEV-LNIRWCPARQCIEVRFQIR---------VDTLSDS----LYFDAVSVYRVNAKGLIYEHLIEKIIRNDLSEKPSMVSLF-------YATRQVLIGGNQPIPDSV 458
            RA P   E TP P P L G      Q+G + F +N GRA+D LR D P LF   PD+SI+T+++ L D +    +GK  Y+ V+ +LR    F+    + +  + IR     + I VR+  +         + TL +     ++ D VSVY ++  GLI +H +E I+        + + L        YAT Q  +   QP+ D++
Sbjct:   50 RATPK-KESTPEPLP-LWGLPPPPEQRGPSVFKLNQGRAIDVLRHDYPRLFTERPDMSIFTDNIELHDPSGKRLAGKKQYERVFDALR----FLRRTTMQDAQVGIRLVADDKSIRVRWNAKLWMRDPATGLTTLVNGEPALVHIDGVSVYDLDKDGLIRQHRLENIVLTGQEPLATPIQLAFAWPATGYATPQAAVPFFQPLADAL 250          
BLAST of NO23G00870 vs. NCBI_GenBank
Match: CBN79040.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.1 bits (183), Expect = 6.300e-10
Identity = 47/165 (28.48%), Postives = 77/165 (46.67%), Query Frame = 0
Query:  274 FPSMTEQTPPPSPRLQGDDD----KRNQQGGNNFTINLGRALDHLRVDVPLLFDREPDLSIYTEDVRLRDEARVYASGKFMYQMVYFSLR-LAKVFMPMPPLVEVLNIRWCPARQCIEVRFQIRVDTLSDSLYFDAVSVYRVNAKGLIYEHLIEKIIRNDLSEKP 434
            FPS+T Q  P      G +D    +R+     +F +NLG+ +  LR D P +F   P   I+TE++ LRD   V   G   Y+ V+ +LR   + FM        L   W   +  +     +++      +Y D +S Y +N+ GL Y H +E ++ N  + +P
Sbjct:   40 FPSITRQPRPGIIARDGTEDLGMRERDDGKSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQRPIYVDGISAYHINSDGLAYRHDLETVVVNGRAVEP 204          
BLAST of NO23G00870 vs. NCBI_GenBank
Match: XP_002956607.1 (hypothetical protein VOLCADRAFT_77161 [Volvox carteri f. nagariensis] >EFJ42374.1 hypothetical protein VOLCADRAFT_77161 [Volvox carteri f. nagariensis])

HSP 1 Score: 75.1 bits (183), Expect = 6.300e-10
Identity = 56/172 (32.56%), Postives = 85/172 (49.42%), Query Frame = 0
Query:  295 RNQQGGNNFTINLGRALDHLRVDVPLLFDREPDLSIYTEDVRLRDEARVYASGKFMYQMVYFSLRLAKVFMPMPPLVEVLNIRWCPARQCIEVRFQI----RVDTLSDSLYFDAVSVYRVNAKGLIYEHLIEKIIRNDLSEKPSMVSLFYATRQVLIGG--------NQPIP 455
            RNQ    ++  N+G A+  LR D+P+LF RE +  IY +DV  RD    +  G   YQ++++SLR           V+V  I W P    I++R+ +    RV   ++   FD +S YR+++ G IYEH ++ I+  D    P M     AT   L+ G         QP+P
Sbjct:  106 RNQGRSEDYFANVGDAIRCLREDIPMLFQRELNFDIYRDDVVFRDPRNCF-KGMKNYQLIFWSLRFHGKIFFKTLYVDVRRI-WQPEDGIIKMRWTVHGIPRVPWEAEGT-FDGISTYRLDSHGKIYEHSVDNILLRD----PPM-----ATNPPLLAGLNLQPLAPQQPVP 265          
BLAST of NO23G00870 vs. NCBI_GenBank
Match: PNW70701.1 (hypothetical protein CHLRE_17g731100v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 74.3 bits (181), Expect = 1.100e-9
Identity = 51/157 (32.48%), Postives = 81/157 (51.59%), Query Frame = 0
Query:  302 NFTINLGRALDHLRVDVPLLFDREPDLSIYTEDVRLRDEARVYASGKFMYQMVYFSLRLAKVFMPMPPLVEVLNIRWCPARQCIEVRFQI----RVDTLSDSLYFDAVSVYRVNAKGLIYEHLIEKIIRNDLSEKPSMVSLFYATRQVLIGGNQPIP 455
            ++  N+G A+  LR D+P+LF RE + SIY ED+  RD  R    G   YQ++++SLR           V+V  I W P    I++R+ +    RV   ++   FD +S YR+++ G IYEH ++ ++  D     +   L     Q L+   QP+P
Sbjct:  107 DYFANVGDAIRSLREDIPMLFQRELNYSIYREDIVFRD-PRNTVKGMKNYQLIFWSLRFHGKLFFNKLYVDVKRI-WQPEDSVIKMRWTVHGIPRVPWEAEGT-FDGISTYRLDSHGRIYEHCVDNVLLRDPPMATNPPLLAGLNLQPLV-PQQPVP 259          
BLAST of NO23G00870 vs. NCBI_GenBank
Match: EPS65551.1 (hypothetical protein M569_09224, partial [Genlisea aurea])

HSP 1 Score: 73.9 bits (180), Expect = 1.400e-9
Identity = 54/171 (31.58%), Postives = 88/171 (51.46%), Query Frame = 0
Query:  278 TEQTPPPSPRLQGDDDKRNQQGGNNFTINLGRALDHLRVDVPLLFDREPDLSIYTEDVRLRDEARVYASGKFMYQMVYFSLRLAKVFMPMPPLVEVLNIRWCPARQCIEVRFQIR-VDTL--SDSLYFDAVSVYRVNAKGLIYEHLIEKIIRN---DLSEKPSMVSLFYAT 443
            T +   P  R  G +DK+ Q   + F +NLG A+  LR D+P +F R+ +  IY +D+  RD    + +G   Y+M++++LR     +     ++VL I W P+   I VR+ +R V  +    S  F A S Y+++  G IYEH ++ +  N    L    S++ L  AT
Sbjct:    3 TRRAVVPVSRSAGVEDKKQQDQRDEFYVNLGLAVRTLREDMPSIFSRDLNYDIYRDDITFRDPLNTF-TGIENYKMIFWALRFHGRLLFSEISLDVLRI-WQPSETTILVRWNLRGVPRIPWEASGQFQATSRYKLDRNGRIYEHKVDNLAFNFPKTLKPAVSVLDLVTAT 171          
BLAST of NO23G00870 vs. NCBI_GenBank
Match: XP_020585753.1 (uncharacterized protein LOC110028302 [Phalaenopsis equestris])

HSP 1 Score: 73.6 bits (179), Expect = 1.800e-9
Identity = 44/143 (30.77%), Postives = 75/143 (52.45%), Query Frame = 0
Query:  288 LQGDDDKRNQQGGNNFTINLGRALDHLRVDVPLLFDREPDLSIYTEDVRLRDEARVYASGKFMYQMVYFSLRLAKVFMPMPPLVEVLNIRWCPARQCIEVRFQ---IRVDTLSDSLYFDAVSVYRVNAKGLIYEHLIEKIIRN 428
            + G DDK      N++ +NLG A+  LR D P++F +EP  SIY +D+  +D    +  G   Y+ ++ ++R     +     V+++++ W P    I +R+    IR         FD +SVY+++ KG I+EH +  I RN
Sbjct:   94 MDGGDDK------NDYYVNLGNAIRTLREDYPIIFYKEPGFSIYRDDIVFKDPLNTFV-GINNYKQIFSAMRFIGPVLFKALWVDIVSV-WQPVENTIMIRWTVNGIRRVPWESCGRFDGISVYKLDRKGKIFEHQVNNIARN 228          
BLAST of NO23G00870 vs. NCBI_GenBank
Match: XP_009039918.1 (hypothetical protein AURANDRAFT_66460 [Aureococcus anophagefferens] >EGB05266.1 hypothetical protein AURANDRAFT_66460 [Aureococcus anophagefferens])

HSP 1 Score: 72.4 bits (176), Expect = 4.100e-9
Identity = 45/159 (28.30%), Postives = 73/159 (45.91%), Query Frame = 0
Query:  301 NNFTINLGRALDHLRVDVPLLFDREPDLSIYTEDVRLRDEARVYASGKFMYQMVYFSLRL-AKVFMPMPPLVEVLNIRWCPARQCIEVRFQIRVDTLSDSLYFDAVSVYRVNAKGLIYEHLIEKIIRNDLSEKPSMVSLFYATRQVLIGGNQPIPDSVG 459
            + F +NLG A+D L+ DVP   DREP+ ++YT DV+L D   V   G   Y+  +  +RL  +V +    +   L   W   R  +               + DAVS + +N +G I++H ++++  N     P     + A RQ ++ G    P   G
Sbjct:   96 SEFELNLGEAIDALKADVPDFPDREPNYAVYTADVQLADPTGVQTRGLTSYKQFFAMIRLFRRVMIDRAEVTYRLRYDWSGKRIIVTWYSSWTARGSRTPAHVDAVSYFHLNEEGRIFKHEVDRVQINGQMMNPPYSVGWLAFRQYVLQGLDGAPAPAG 254          
BLAST of NO23G00870 vs. NCBI_GenBank
Match: XP_001701509.1 (predicted protein, partial [Chlamydomonas reinhardtii])

HSP 1 Score: 72.0 bits (175), Expect = 5.400e-9
Identity = 45/131 (34.35%), Postives = 72/131 (54.96%), Query Frame = 0
Query:  302 NFTINLGRALDHLRVDVPLLFDREPDLSIYTEDVRLRDEARVYASGKFMYQMVYFSLRLAKVFMPMPPLVEVLNIRWCPARQCIEVRFQI----RVDTLSDSLYFDAVSVYRVNAKGLIYEHLIEKIIRND 429
            ++  N+G A+  LR D+P+LF RE + SIY ED+  RD  R    G   YQ++++SLR           V+V  I W P    I++R+ +    RV   ++   FD +S YR+++ G IYEH ++ ++  D
Sbjct:   30 DYFANVGDAIRSLREDIPMLFQRELNYSIYREDIVFRD-PRNTVKGMKNYQLIFWSLRFHGKLFFNKLYVDVKRI-WQPEDSVIKMRWTVHGIPRVPWEAEGT-FDGISTYRLDSHGRIYEHCVDNVLLRD 157          
BLAST of NO23G00870 vs. NCBI_GenBank
Match: PRW57262.1 (U2 snRNP-associated SURP motif-containing [Chlorella sorokiniana])

HSP 1 Score: 72.0 bits (175), Expect = 5.400e-9
Identity = 49/146 (33.56%), Postives = 78/146 (53.42%), Query Frame = 0
Query:  302 NFTINLGRALDHLRVDVPLLFDREPDLSIYTEDVRLRDEARVYASGKFMYQMVYFSLRLAKVFMPMPPLVEVLNIRWCPARQCIEVRFQIRVDT-LSDSLYFDAVSVYRVNAKGLIYEHLIEKIIRNDLSEKPSMVSLFYATRQVL 447
            +F  N+G A+  LR D PLLF +E + +IY ED+  +D  ++   G   Y+++++SLR           V+VL I W P    I++R+QI   T +  +  FD +SVYR++  G +Y+H +  +    L + P    L YA   VL
Sbjct:  166 DFFANVGDAIRTLREDYPLLFAKELNYAIYREDLVFKD-PQLSFRGLRNYKLIFWSLRFHGRLFLQAANVQVLRI-WQPQDDVIKLRWQISARTRMGTNGTFDGISVYRLDRHGRVYQHEVTDV---QLRDPPVTNPLLYALNFVL 306          
The following BLAST results are available for this feature:
BLAST of NO23G00870 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22953.11.900e-8683.51Protein of unknown function DUF2358 [Nannochlorops... [more]
KOO23847.15.700e-1130.92hypothetical protein Ctob_000770 [Chrysochromulina... [more]
CBN79040.16.300e-1028.48conserved unknown protein [Ectocarpus siliculosus][more]
XP_002956607.16.300e-1032.56hypothetical protein VOLCADRAFT_77161 [Volvox cart... [more]
PNW70701.11.100e-932.48hypothetical protein CHLRE_17g731100v5 [Chlamydomo... [more]
EPS65551.11.400e-931.58hypothetical protein M569_09224, partial [Genlisea... [more]
XP_020585753.11.800e-930.77uncharacterized protein LOC110028302 [Phalaenopsis... [more]
XP_009039918.14.100e-928.30hypothetical protein AURANDRAFT_66460 [Aureococcus... [more]
XP_001701509.15.400e-934.35predicted protein, partial [Chlamydomonas reinhard... [more]
PRW57262.15.400e-933.56U2 snRNP-associated SURP motif-containing [Chlorel... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006340NSK006340Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00870.1NO23G00870.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602032gene_8439Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100396g3gene7498Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00870.1NO23G00870.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00870 ID=NO23G00870|Name=NO23G00870|organism=Nannochloropsis oceanica|type=gene|length=1762bp
ATGGATGGAGGTGTCACAGGAGGGCGGGGAGGGGCGGGGGGAGGATTACG
CAGCAGCGATAGGAGTAGCGCGGGCACGGGCGTTTGCCGAGGGGGGGGTC
CTCCCGGTACCCAGGGAGGGGTGGGGACGGGTGGGAAGTGGTTGGCAGCG
GGACCAAGTTTGTCGAGAGGGTGTGTGATGAATCACTTGATTCCTGCCCG
GTTTCGATGGGGAGAGGCATCGGACGAGGACCTGTCCCTGCTGTCCTCTT
CTTCGCTTCTTTCCCCGTCATCACTACGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGTATCACA
TACGTTCTTATCCTCCTTGGTATCTGCGGCGGTTGGGGTGGAGGAGGAGA
GCCTTAAGCCTTTCCTCATTCCCGCCGGCATGGGTCCTCTGACATACAGC
AGCAGCAGCAGCAGTAGCAGCTACAGCTATGGCAGTGGTGCAGGATTTTT
CCATTTGCATGAAGATCTGGGACCCTTAAGTAGTGAGGAAGCAATGGAGG
GAGAGAGGGAGGGAGAAGGAGGGAAGAGAGTGATGGAGGAAGTGGAAGAA
GAGGTGGAGGAACAGCACGCCGCGACGAGTAGCAGCAATTGGGTAGAGAG
CAGAAGAAGAAGAGGAAGCACCCCCTCTCCTTCGTCGCCATCGTCGTCCT
CTTCCTCCTCATCCTCAGCAACAAAAGGATTTATGGACGAGGGCGGGGAG
GCGGACGGGGGGGAAGGGATGCACACACCTCACCAGCACCTCAAAGCTTC
GGGCGACCTTCTGCGTGCTTTCCCCTCTATGACCGAGCAGACCCCTCCTC
CCTCCCCGCGCTTGCAAGGCGACGACGACAAGCGGAACCAGCAGGGCGGC
AACAACTTCACAATTAACCTCGGGCGGGCCCTGGACCACTTGCGGGTGGA
CGTGCCCCTCCTCTTCGACCGCGAGCCCGACCTCTCCATCTACACAGAGG
ACGTCCGACTGAGAGACGAGGCGCGCGTGTACGCAAGCGGGAAGTTCATG
TACCAGATGGTGTATTTCTCGCTCCGACTGGCGAAGGTGTTCATGCCCAT
GCCGCCACTGGTGGAGGTGCTCAACATCAGGTGGTGCCCAGCCAGACAGT
GCATTGAAGTCCGCTTTCAGATCCGGGTGGATACCTTGTCAGACTCACTC
TACTTCGACGCCGTGTCGGTGTATAGGGTCAACGCCAAGGGCCTCATCTA
CGAGCACTTGATTGAAAAAAgtacgtgtgcttctcccctcccttccctcc
cctccctccttccccccccgtgtgtcagcatgacccccgactccccaagt
caatccacttctcccctcccttccctcccctccctccttccccccccgtg
tctcagcatgacccccgactccccaagtcaatccacttctcccctccctt
ccctcccctccctccttccccccccgggtgtcagcatgacccccgactcc
ccaagtcaatccacttcccctcacccccttccctcttttaccatcttacc
aagcctgccaagcccgctatttcgacccatatgttgccacgttccgaatc
acaaggaaagcacactcacggccaaccctccttcccctctctcttccttt
agTCATCCGCAACGACCTCTCGGAGAAACCCTCTATGGTCAGCCTCTTCT
ACGCCACGCGCCAGGTGCTCATTGGGGGGAACCAGCCCATTCCTGACAGC
GTGGGAATGTGA
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protein sequence of NO23G00870.1

>NO23G00870.1-protein ID=NO23G00870.1-protein|Name=NO23G00870.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MDGGVTGGRGGAGGGLRSSDRSSAGTGVCRGGGPPGTQGGVGTGGKWLAA
GPSLSRGCVMNHLIPARFRWGEASDEDLSLLSSSSLLSPSSLRSSSSSSS
SSSSSSSSSSSSSRVSHTFLSSLVSAAVGVEEESLKPFLIPAGMGPLTYS
SSSSSSSYSYGSGAGFFHLHEDLGPLSSEEAMEGEREGEGGKRVMEEVEE
EVEEQHAATSSSNWVESRRRRGSTPSPSSPSSSSSSSSSATKGFMDEGGE
ADGGEGMHTPHQHLKASGDLLRAFPSMTEQTPPPSPRLQGDDDKRNQQGG
NNFTINLGRALDHLRVDVPLLFDREPDLSIYTEDVRLRDEARVYASGKFM
YQMVYFSLRLAKVFMPMPPLVEVLNIRWCPARQCIEVRFQIRVDTLSDSL
YFDAVSVYRVNAKGLIYEHLIEKIIRNDLSEKPSMVSLFYATRQVLIGGN
QPIPDSVGM*
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Synonyms
Publications