NO23G00690, NO23G00690 (gene) Nannochloropsis oceanica

Overview
NameNO23G00690
Unique NameNO23G00690
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length729
Alignment locationchr23:263611..264339 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:263611..264339 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027986TCAIM
IPR028031DUF4460
Homology
[Close]
BLAST of NO23G00690 vs. NCBI_GenBank
Match: EWM22962.1 (hypothetical protein Naga_100102g6 [Nannochloropsis gaditana])

HSP 1 Score: 257.7 bits (657), Expect = 3.200e-65
Identity = 127/165 (76.97%), Postives = 140/165 (84.85%), Query Frame = 0 
Query:   48 SYKISTARSSRGGRKRGGPAPSWSRFQPDGDAAAHPPLQHTLRKFYLKVHPDLFTHYPTQKQVNQESFSRFQAFLDDVRDKDTAPPRAGLHAYRFYLKTKDDGLFQEVALELRTTGGDCRNVVQRSLERFFKLCGLPEKFIWAEGDWNYSIEVMSEEERQKQEQE 213
            S  ISTAR  RGGRKR G AP W R Q DGD  AHP LQ TLRKF+L+VHPDLFT+YP QK VNQESFSRFQAFLDDVRDKDTAPPRAGLH+YRF+LKTK+DG FQEV+LELRTTGGDCRN+VQRSLE FFK CGLPEKF+WAEGDW+YS+E    EERQ Q+ +
Sbjct:    3 SQAISTAR-QRGGRKRAGLAPRW-RHQADGDGGAHPLLQQTLRKFFLRVHPDLFTYYPKQKDVNQESFSRFQAFLDDVRDKDTAPPRAGLHSYRFFLKTKEDGRFQEVSLELRTTGGDCRNLVQRSLEAFFKECGLPEKFVWAEGDWDYSLE--DAEERQTQQSQ 163
[Close]
BLAST of NO23G00690 vs. NCBI_GenBank
Match: XP_002908428.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY61511.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 117.9 bits (294), Expect = 4.000e-23
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 0 
Query:   83 PPLQHTLRKFYLKVHPDLFTHYPTQKQVNQESFSRFQAFLDDVRDKDTAPPRAGLHAYRFYLKTKDDGLFQEVALELRTTGGDCRNVVQRSLERFFKLCGLPEKFIWAEGDWNYSI 199
            P L+ TLRK YL+ HPDLF  YP Q++ N+ES+      LD +   +  PP   L    F+LKT  +G F+EV L+LRTTGG C  +V+ +L RFF  CGLPE F W EG W  ++
Sbjct:   10 PMLKDTLRKLYLRTHPDLFGRYPEQQRANEESYKELLGILDAIEKHNEFPPAKTL-VLPFFLKTPVEGEFKEVDLQLRTTGGACNTLVEEALGRFFGECGLPEVFQWGEGSWGKAV 124
[Close]
BLAST of NO23G00690 vs. NCBI_GenBank
Match: XP_009523783.1 (hypothetical protein PHYSODRAFT_489895 [Phytophthora sojae] >EGZ21066.1 hypothetical protein PHYSODRAFT_489895 [Phytophthora sojae])

HSP 1 Score: 117.5 bits (293), Expect = 5.200e-23
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 0 
Query:   83 PPLQHTLRKFYLKVHPDLFTHYPTQKQVNQESFSRFQAFLDDVRDKDTAPPRAGLHAYRFYLKTKDDGLFQEVALELRTTGGDCRNVVQRSLERFFKLCGLPEKFIWAEGDWNYSI 199
            P L+ TLRK YL+ HPDLF  YP Q++ N+ES+      LD +   +  PP   L    F+LKT  +G F+EV L+LRTTGG C  +V+ +L RFF  CGLP+ F W EG W  ++
Sbjct:   10 PMLKDTLRKLYLRTHPDLFGRYPEQQRANEESYKELLGILDAIEKHNEFPPAKTL-VLPFFLKTPVEGQFKEVDLQLRTTGGACNTLVEEALGRFFGECGLPQAFQWGEGSWGKAV 124
[Close]
BLAST of NO23G00690 vs. NCBI_GenBank
Match: XP_009523785.1 (hypothetical protein PHYSODRAFT_557313 [Phytophthora sojae] >EGZ21068.1 hypothetical protein PHYSODRAFT_557313 [Phytophthora sojae])

HSP 1 Score: 117.5 bits (293), Expect = 5.200e-23
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 0 
Query:   83 PPLQHTLRKFYLKVHPDLFTHYPTQKQVNQESFSRFQAFLDDVRDKDTAPPRAGLHAYRFYLKTKDDGLFQEVALELRTTGGDCRNVVQRSLERFFKLCGLPEKFIWAEGDWNYSI 199
            P L+ TLRK YL+ HPDLF  YP Q++ N+ES+      LD +   +  PP   L    F+LKT  +G F+EV L+LRTTGG C  +V+ +L RFF  CGLP+ F W EG W  ++
Sbjct:   88 PMLKDTLRKLYLRTHPDLFGRYPEQQRANEESYKELLGILDAIEKHNEFPPAKTL-VLPFFLKTPVEGQFKEVDLQLRTTGGACNTLVEEALGRFFGECGLPQAFQWGEGSWGKAV 202
[Close]
BLAST of NO23G00690 vs. NCBI_GenBank
Match: XP_002908430.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY61513.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 117.5 bits (293), Expect = 5.200e-23
Identity = 55/116 (47.41%), Postives = 72/116 (62.07%), Query Frame = 0 
Query:   83 PPLQHTLRKFYLKVHPDLFTHYPTQKQVNQESFSRFQAFLDDVRDKDTAPPRAGLHAYRFYLKTKDDGLFQEVALELRTTGGDCRNVVQRSLERFFKLCGLPEKFIWAEGDWNYSI 199
            P L+ TLRK YL+ HPDLF  YP Q++ N+ES+      LD +   +  PP   L    F+LKT  +G F+EV L+LRTTGG C  +V+ +L RFF  CGLPE F W EG W  ++
Sbjct:   51 PMLKDTLRKLYLRTHPDLFGRYPEQQRANEESYKELLGILDAIEKYNEFPPAKTL-VLPFFLKTPVEGEFKEVDLQLRTTGGACNTLVEEALGRFFGECGLPEVFQWGEGSWGKAV 165
[Close]
BLAST of NO23G00690 vs. NCBI_GenBank
Match: XP_024583556.1 (T-cell activation inhibitor, mitochondrial [Plasmopara halstedii] >CEG47187.1 T-cell activation inhibitor, mitochondrial [Plasmopara halstedii])

HSP 1 Score: 117.5 bits (293), Expect = 5.200e-23
Identity = 55/116 (47.41%), Postives = 70/116 (60.34%), Query Frame = 0 
Query:   83 PPLQHTLRKFYLKVHPDLFTHYPTQKQVNQESFSRFQAFLDDVRDKDTAPPRAGLHAYRFYLKTKDDGLFQEVALELRTTGGDCRNVVQRSLERFFKLCGLPEKFIWAEGDWNYSI 199
            P L+ TLRK YL+ HPDLF  YP Q++ N+ES+      LD +   +  PP   L +  F+LKT  +G FQEV L LRTTGG C  +V+ +L RFF  C LPE F W EG W   +
Sbjct:   81 PMLKETLRKLYLRTHPDLFGRYPNQQRANEESYKELLGILDAIEKHNEFPPAKTL-SLPFFLKTPVEGEFQEVKLRLRTTGGACNTLVEEALGRFFGECSLPEVFQWGEGSWGKGV 195
[Close]
BLAST of NO23G00690 vs. NCBI_GenBank
Match: XP_024583558.1 (T-cell activation inhibitor, mitochondrial [Plasmopara halstedii] >CEG47189.1 T-cell activation inhibitor, mitochondrial [Plasmopara halstedii])

HSP 1 Score: 117.5 bits (293), Expect = 5.200e-23
Identity = 55/116 (47.41%), Postives = 70/116 (60.34%), Query Frame = 0 
Query:   83 PPLQHTLRKFYLKVHPDLFTHYPTQKQVNQESFSRFQAFLDDVRDKDTAPPRAGLHAYRFYLKTKDDGLFQEVALELRTTGGDCRNVVQRSLERFFKLCGLPEKFIWAEGDWNYSI 199
            P L+ TLRK YL+ HPDLF  YP Q++ N+ES+      LD +   +  PP   L +  F+LKT  +G FQEV L LRTTGG C  +V+ +L RFF  C LPE F W EG W   +
Sbjct:   81 PMLKETLRKLYLRTHPDLFGRYPNQQRANEESYKELLGILDAIEKHNEFPPAKTL-SLPFFLKTPVEGEFQEVKLRLRTTGGACNTLVEEALGRFFGECSLPEVFQWGEGSWGKGV 195
[Close]
BLAST of NO23G00690 vs. NCBI_GenBank
Match: ETK96068.1 (hypothetical protein L915_01092 [Phytophthora parasitica] >ETL49443.1 hypothetical protein L916_01076 [Phytophthora parasitica])

HSP 1 Score: 116.7 bits (291), Expect = 8.900e-23
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 0 
Query:   83 PPLQHTLRKFYLKVHPDLFTHYPTQKQVNQESFSRFQAFLDDVRDKDTAPPRAGLHAYRFYLKTKDDGLFQEVALELRTTGGDCRNVVQRSLERFFKLCGLPEKFIWAEGDWNYSI 199
            P L+ TLRK YL+ HPDLF  YP Q++ N+ES+      LD +   +  PP   L    F+LKT  +G F+EV L+LRTTGG C  +V+ +L RFF  CGLP+ F W EG W  ++
Sbjct:   10 PMLKDTLRKLYLRTHPDLFGRYPEQQRANEESYKELLGILDAIEKHNEFPPAKTL-VLPFFLKTPVEGEFKEVDLQLRTTGGACNTLVEEALGRFFGECGLPQVFRWGEGSWGKAV 124
[Close]
BLAST of NO23G00690 vs. NCBI_GenBank
Match: ETK96070.1 (hypothetical protein L915_01094, partial [Phytophthora parasitica])

HSP 1 Score: 116.7 bits (291), Expect = 8.900e-23
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 0 
Query:   83 PPLQHTLRKFYLKVHPDLFTHYPTQKQVNQESFSRFQAFLDDVRDKDTAPPRAGLHAYRFYLKTKDDGLFQEVALELRTTGGDCRNVVQRSLERFFKLCGLPEKFIWAEGDWNYSI 199
            P L+ TLRK YL+ HPDLF  YP Q++ N+ES+      LD +   +  PP   L    F+LKT  +G F+EV L+LRTTGG C  +V+ +L RFF  CGLP+ F W EG W  ++
Sbjct:   27 PMLKDTLRKLYLRTHPDLFGRYPEQQRANEESYKELLGILDAIEKHNEFPPAKTL-VLPFFLKTPVEGEFKEVDLQLRTTGGACNTLVEEALGRFFGECGLPQVFQWGEGSWGKAV 141
[Close]
BLAST of NO23G00690 vs. NCBI_GenBank
Match: ETL49445.1 (hypothetical protein L916_01078, partial [Phytophthora parasitica])

HSP 1 Score: 116.7 bits (291), Expect = 8.900e-23
Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 0 
Query:   83 PPLQHTLRKFYLKVHPDLFTHYPTQKQVNQESFSRFQAFLDDVRDKDTAPPRAGLHAYRFYLKTKDDGLFQEVALELRTTGGDCRNVVQRSLERFFKLCGLPEKFIWAEGDWNYSI 199
            P L+ TLRK YL+ HPDLF  YP Q++ N+ES+      LD +   +  PP   L    F+LKT  +G F+EV L+LRTTGG C  +V+ +L RFF  CGLP+ F W EG W  ++
Sbjct:   22 PMLKDTLRKLYLRTHPDLFGRYPEQQRANEESYKELLGILDAIEKHNEFPPAKTL-VLPFFLKTPVEGEFKEVDLQLRTTGGACNTLVEEALGRFFGECGLPQVFQWGEGSWGKAV 136
The following BLAST results are available for this feature:
BLAST of NO23G00690 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22962.13.200e-6576.97hypothetical protein Naga_100102g6 [Nannochloropsi... [more]
XP_002908428.14.000e-2347.41conserved hypothetical protein [Phytophthora infes... [more]
XP_009523783.15.200e-2346.55hypothetical protein PHYSODRAFT_489895 [Phytophtho... [more]
XP_009523785.15.200e-2346.55hypothetical protein PHYSODRAFT_557313 [Phytophtho... [more]
XP_002908430.15.200e-2347.41conserved hypothetical protein [Phytophthora infes... [more]
XP_024583556.15.200e-2347.41T-cell activation inhibitor, mitochondrial [Plasmo... [more]
XP_024583558.15.200e-2347.41T-cell activation inhibitor, mitochondrial [Plasmo... [more]
ETK96068.18.900e-2346.55hypothetical protein L915_01092 [Phytophthora para... [more]
ETK96070.18.900e-2346.55hypothetical protein L915_01094, partial [Phytopht... [more]
ETL49445.18.900e-2346.55hypothetical protein L916_01078, partial [Phytopht... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL034nonsL034Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK006316NSK006316Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00690.1NO23G00690.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601941gene_8417Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100102g6gene7483Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00690.1NO23G00690.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00690 ID=NO23G00690|Name=NO23G00690|organism=Nannochloropsis oceanica|type=gene|length=729bp
CCTTTCTCCAAACCCCAACTCAAAGCAGGTAGATCAATCACACGCACTGA
ACCAGCATGAACTTCCTCCGCCTGGGCAGCAGCAGCAGTCGCAGCAGCAG
CACCATGGCCAGCCGCATCCGCCCTCGCCAGCCAGCCTCTTCTGCCTCTT
CCTCCGCCTCGTGGTCTCGTACCCACCTTCCTGTCCTTAATACGCTTAGC
TACAAGATATCTACGGCCCGGTCATCGCGCGGCGGGCGGAAACGTGGGGG
CCCCGCGCCGTCGTGGAGTCGTTTCCAACCCGACGGTGACGCCGCTGCCC
ACCCACCCCTGCAACACACCCTCCGCAAATTTTACCTAAAGGTGCACCCT
GATCTTTTCACGCACTATCCGACGCAAAAGCAGGTGAATCAGGAGTCTTT
CAGTCGCTTTCAAGCGTTTCTTGACGACGTCCGTGATAAGGACACGGCCC
CGCCGCGCGCCGGGTTGCACGCCTACCGTTTCTACCTCAAGACGAAAGAC
GACGGGCTCTTCCAAGAGGTGGCCCTAGAGCTGAGGACAACAGGAGGGGA
TTGCCGCAATGTTGTACAGCGCTCGCTGGAACGGTTCTTCAAGCTTTGCG
GGTTGCCCGAGAAGTTTATTTGGGCGGAGGGGGATTGGAATTATAGCATT
GAGGTAATGTCGGAAGAGGAGAGACAAAAGCAGGAACAGGAAGGGTAAAA
TAGAAGAAAAATTAATGATATATAAGGGA
back to top

protein sequence of NO23G00690.1

>NO23G00690.1-protein ID=NO23G00690.1-protein|Name=NO23G00690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MNFLRLGSSSSRSSSTMASRIRPRQPASSASSSASWSRTHLPVLNTLSYK
ISTARSSRGGRKRGGPAPSWSRFQPDGDAAAHPPLQHTLRKFYLKVHPDL
FTHYPTQKQVNQESFSRFQAFLDDVRDKDTAPPRAGLHAYRFYLKTKDDG
LFQEVALELRTTGGDCRNVVQRSLERFFKLCGLPEKFIWAEGDWNYSIEV
MSEEERQKQEQEG*
back to top
Synonyms
Publications