NO23G00570, NO23G00570 (gene) Nannochloropsis oceanica

Overview
NameNO23G00570
Unique NameNO23G00570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length822
Alignment locationchr23:239201..240022 +

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Properties
Property NameValue
DescriptionTBP-associated factor 11
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:239201..240022 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR006809TAFII28
Homology
[Close]
BLAST of NO23G00570 vs. NCBI_GenBank
Match: EWM22979.1 (TAFII28-like protein [Nannochloropsis gaditana])

HSP 1 Score: 91.3 bits (225), Expect = 4.200e-15
Identity = 42/50 (84.00%), Postives = 50/50 (100.00%), Query Frame = 0 
Query:   72 RQKVLHAERMRIAMANMSEGQKERFEFFRRSHFHRDTIKKIMLESFSRIR 122
            RQKVLHAERMRIA+ANMSEGQ+ERFEFFRRSHFHR+T+K++MLESF+R+R
Sbjct:   63 RQKVLHAERMRIALANMSEGQRERFEFFRRSHFHRETMKRLMLESFARVR 112
[Close]
BLAST of NO23G00570 vs. NCBI_GenBank
Match: XP_001847221.1 (transcription initiation factor TFIID subunit 11 [Culex quinquefasciatus] >EDS45850.1 transcription initiation factor TFIID subunit 11 [Culex quinquefasciatus])

HSP 1 Score: 67.4 bits (163), Expect = 6.400e-8
Identity = 42/134 (31.34%), Postives = 68/134 (50.75%), Query Frame = 0 
Query:   79 ERMRIAMANMSEGQKERFEFFRRSHFHRDTIKKIMLESFSRIREGSTYPRSAAVASAAAPGRGGDEGGEGLGVDMNEQMVIVMSALCKLFVGDLVHGARQVMEERGEDGAIAPARLREALRRAVREKRLPVMRG 213
            E+M++ ++N +E Q +R+E +RR+ F +  +K++M                                    G  +++ +VI MS + K+FVG++V  A  VME  GE GAI P  LREA+RRA +  ++P  RG
Sbjct:  100 EKMQVLVSNFTEEQLDRYEMYRRAAFPKAAVKRLMQTI--------------------------------TGCSVSQNVVIAMSGIAKVFVGEVVEEALDVMERTGETGAIQPKYLREAVRRARQRGQIPNGRG 201
[Close]
BLAST of NO23G00570 vs. NCBI_GenBank
Match: GAX95202.1 (Hypothetical protein PINS_003119 [Pythium insidiosum])

HSP 1 Score: 66.2 bits (160), Expect = 1.400e-7
Identity = 46/130 (35.38%), Postives = 65/130 (50.00%), Query Frame = 0 
Query:   85 MANMSEGQKERFEFFRRSHFHRDTIKKIMLESFSRIREGSTYPRSAAVASAAAPGRGGDEGGEGLGVDMNEQMVIVMSALCKLFVGDLVHGARQVMEERGEDGAIAPARLREALRRAVREKRLPVMRGAL 215
            + ++ EG+  R E FRRSHF R  IK+IM ++           +    A   AP              + + M IVM+ + K+ VG+L   AR++ME+ GE G I P  LREA RR    KR P+ RG +
Sbjct:  170 LRSLPEGEARRHEHFRRSHFDRGAIKRIMAKAI----------QDCTPAEKRAP-------------SVTQVMAIVMAGMTKVLVGELTAEARRLMEKNGEAGPIQPRHLREASRRYY--KRRPLARGRM 274
[Close]
BLAST of NO23G00570 vs. NCBI_GenBank
Match: XP_017860185.1 (PREDICTED: transcription initiation factor TFIID subunit 11 isoform X2 [Drosophila arizonae] >XP_017954513.1 PREDICTED: transcription initiation factor TFIID subunit 11 isoform X2 [Drosophila navojoa])

HSP 1 Score: 65.9 bits (159), Expect = 1.900e-7
Identity = 40/127 (31.50%), Postives = 65/127 (51.18%), Query Frame = 0 
Query:   85 MANMSEGQKERFEFFRRSHFHRDTIKKIMLESFSRIREGSTYPRSAAVASAAAPGRGGDEGGEGLGVDMNEQMVIVMSALCKLFVGDLVHGARQVMEERGEDGAIAPARLREALRRAVREKRLPVMR 212
            M+N +E Q +R+E +RRS F +  +K++M                                    G  +++ +VI MS + K+FVG++V  A  VME++GE GA+ P  +REA+RR  R+ R+P+ R
Sbjct:    1 MSNFTEEQLDRYEMYRRSAFPKAAVKRLMQTI--------------------------------TGCSVSQNVVIAMSGIAKVFVGEVVEEALDVMEQQGESGALQPKFIREAVRRLRRKGRMPIGR 95
[Close]
BLAST of NO23G00570 vs. NCBI_GenBank
Match: XP_019543146.1 (PREDICTED: transcription initiation factor TFIID subunit 11-like [Aedes albopictus])

HSP 1 Score: 65.9 bits (159), Expect = 1.900e-7
Identity = 41/134 (30.60%), Postives = 66/134 (49.25%), Query Frame = 0 
Query:   79 ERMRIAMANMSEGQKERFEFFRRSHFHRDTIKKIMLESFSRIREGSTYPRSAAVASAAAPGRGGDEGGEGLGVDMNEQMVIVMSALCKLFVGDLVHGARQVMEERGEDGAIAPARLREALRRAVREKRLPVMRG 213
            E+M++ ++N +E Q +R+E +RR+ F +  +K++M                                    G  +++ +VI MS + K+FVG++V  A  VME  GE GAI P  LREA+RR     ++P  RG
Sbjct:  127 EKMQVLVSNFTEEQLDRYEMYRRAAFPKAAVKRLMQTI--------------------------------TGCSVSQNVVIAMSGIAKVFVGEVVEEALDVMEHTGETGAIQPKYLREAVRRLRARGQIPSSRG 228
[Close]
BLAST of NO23G00570 vs. NCBI_GenBank
Match: ETL90649.1 (hypothetical protein L917_10718 [Phytophthora parasitica])

HSP 1 Score: 65.5 bits (158), Expect = 2.400e-7
Identity = 46/128 (35.94%), Postives = 63/128 (49.22%), Query Frame = 0 
Query:   85 MANMSEGQKERFEFFRRSHFHRDTIKKIMLESFSRIREGSTYPRSAAVASAAAPGRGGDEGGEGLGVDMNEQMVIVMSALCKLFVGDLVHGARQVMEERGEDGAIAPARLREALRRAVREKRLPVMRG 213
            M ++ E +  R E FRRSHF R  IK+ M ++   I E S   + A                      +   M IVMS + K+FVG++   AR++ME+ GE G I P  LREA R+    KR P+ RG
Sbjct:   85 MESLPEAEARRHEQFRRSHFERGAIKRCMAQA---IHECSATDKKAP--------------------SVTNVMAIVMSGMTKVFVGEITAEARRIMEKNGETGPIRPHHLREAYRKYY--KRRPLARG 187
[Close]
BLAST of NO23G00570 vs. NCBI_GenBank
Match: XP_001649759.1 (transcription initiation factor TFIID subunit 11 [Aedes aegypti] >EAT32912.1 AAEL014850-PA [Aedes aegypti] >EAT38035.1 AAEL010019-PA [Aedes aegypti])

HSP 1 Score: 65.1 bits (157), Expect = 3.200e-7
Identity = 41/134 (30.60%), Postives = 66/134 (49.25%), Query Frame = 0 
Query:   79 ERMRIAMANMSEGQKERFEFFRRSHFHRDTIKKIMLESFSRIREGSTYPRSAAVASAAAPGRGGDEGGEGLGVDMNEQMVIVMSALCKLFVGDLVHGARQVMEERGEDGAIAPARLREALRRAVREKRLPVMRG 213
            E+M++ ++N +E Q +R+E +RR+ F +  +K++M                                    G  +++ +VI MS + K+FVG++V  A  VME  GE GAI P  LREA+RR     ++P  RG
Sbjct:  117 EKMQVLVSNFTEEQLDRYEMYRRAAFPKAAVKRLMQTI--------------------------------TGCSVSQNVVIAMSGIAKVFVGEVVEEALDVMEHTGETGAIQPKYLREAVRRLRARGQIPSGRG 218
[Close]
BLAST of NO23G00570 vs. NCBI_GenBank
Match: GAQ81577.1 (Transcription initiation factor TFIID subunit [Klebsormidium nitens])

HSP 1 Score: 65.1 bits (157), Expect = 3.200e-7
Identity = 48/131 (36.64%), Postives = 64/131 (48.85%), Query Frame = 0 
Query:   79 ERMRIAMANMSEGQKERFEFFRRSHFHRDTIKKIMLESFSRIREGSTYPRSAAVASAAAPGRGGDEGGEGLGVDMNEQMVIVMSALCKLFVGDLVHGARQVMEERGEDGAIAPARLREALRRAVREKRLPV 210
            ERM+   A+M+E Q  R+E FRRS   R  +K++M +S S                               G +++  M IVM  L K+FVGDLV  AR+VM E  E G I P  +REALRR     ++PV
Sbjct:  152 ERMQQIFASMTEEQMRRYECFRRSGLSRPNLKRLM-QSVS-------------------------------GSNVSIPMSIVMGGLSKMFVGDLVETAREVMTEWNETGPIRPTHIREALRRLKSGGKVPV 250
[Close]
BLAST of NO23G00570 vs. NCBI_GenBank
Match: KXJ79944.1 (hypothetical protein RP20_CCG027435 [Aedes albopictus])

HSP 1 Score: 65.1 bits (157), Expect = 3.200e-7
Identity = 41/134 (30.60%), Postives = 66/134 (49.25%), Query Frame = 0 
Query:   79 ERMRIAMANMSEGQKERFEFFRRSHFHRDTIKKIMLESFSRIREGSTYPRSAAVASAAAPGRGGDEGGEGLGVDMNEQMVIVMSALCKLFVGDLVHGARQVMEERGEDGAIAPARLREALRRAVREKRLPVMRG 213
            E+M++ ++N +E Q +R+E +RR+ F +  +K++M                                    G  +++ +VI MS + K+FVG++V  A  VME  GE GAI P  LREA+RR     ++P  RG
Sbjct:  127 EKMQVLVSNFTEEQLDRYEMYRRAAFPKAAVKRLMQTI--------------------------------TGCSVSQNVVIAMSGIAKVFVGEVVEEALDVMEHTGETGAIQPKYLREAVRRLRARGQIPSGRG 228
[Close]
BLAST of NO23G00570 vs. NCBI_GenBank
Match: XP_019536839.1 (PREDICTED: transcription initiation factor TFIID subunit 11 [Aedes albopictus])

HSP 1 Score: 65.1 bits (157), Expect = 3.200e-7
Identity = 41/134 (30.60%), Postives = 66/134 (49.25%), Query Frame = 0 
Query:   79 ERMRIAMANMSEGQKERFEFFRRSHFHRDTIKKIMLESFSRIREGSTYPRSAAVASAAAPGRGGDEGGEGLGVDMNEQMVIVMSALCKLFVGDLVHGARQVMEERGEDGAIAPARLREALRRAVREKRLPVMRG 213
            E+M++ ++N +E Q +R+E +RR+ F +  +K++M                                    G  +++ +VI MS + K+FVG++V  A  VME  GE GAI P  LREA+RR     ++P  RG
Sbjct:  127 EKMQVLVSNFTEEQLDRYEMYRRAAFPKAAVKRLMQTI--------------------------------TGCSVSQNVVIAMSGIAKVFVGEVVEEALDVMEHTGETGAIQPKYLREAVRRLRARGQIPSGRG 228
The following BLAST results are available for this feature:
BLAST of NO23G00570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22979.14.200e-1584.00TAFII28-like protein [Nannochloropsis gaditana][more]
XP_001847221.16.400e-831.34transcription initiation factor TFIID subunit 11 [... [more]
GAX95202.11.400e-735.38Hypothetical protein PINS_003119 [Pythium insidios... [more]
XP_017860185.11.900e-731.50PREDICTED: transcription initiation factor TFIID s... [more]
XP_019543146.11.900e-730.60PREDICTED: transcription initiation factor TFIID s... [more]
ETL90649.12.400e-735.94hypothetical protein L917_10718 [Phytophthora para... [more]
XP_001649759.13.200e-730.60transcription initiation factor TFIID subunit 11 [... [more]
GAQ81577.13.200e-736.64Transcription initiation factor TFIID subunit [Kle... [more]
KXJ79944.13.200e-730.60hypothetical protein RP20_CCG027435 [Aedes albopic... [more]
XP_019536839.13.200e-730.60PREDICTED: transcription initiation factor TFIID s... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00570.1NO23G00570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601899gene_8402Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101525g1gene7470Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00570.1NO23G00570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00570 ID=NO23G00570|Name=NO23G00570|organism=Nannochloropsis oceanica|type=gene|length=822bp
ATGAAACGCGGTCGTACCGGCTCCATCGACCTCTTCTCCGACCAGAGTTA
CAGCATCGGCGCCTCTCCCTCCTCCTCCTCCTCCTCTCCTGCCCGTCACG
GTGGGGGTGAGGCGTTAGGCAGAACCAGCAGCGCTCGTTCGGATGGGGGT
GGGAGTGCTGCTGGCGCTGCGGCGGGTGGGGGGATGGGGGGAGGGATGGA
TGATGAGGCGACGAGGCAGAAGGTTTTGCATGCTGAGAGGATGCGGATTG
CCATGGCCAACATGAGCGAGGGACAAAAGGAGAGATTTGAGTTTTTCCGT
CGTTCGCATTTTCACAGGGACACGATCAAGAAGATCATGCTCGAGAGCTT
CAGTCGAATCCGCGAAGGGTCTACCTACCCTCGTTCCGCCGCTGTTGCTA
GTGCTGCTGCCCCAGGAAGAGGAGGGGATGAGGGGGGCGAGGGACTGGGT
GTTGACATGAATGAGCAGATGGTGATCGTGATGAGTGCACTTTGCAAGCT
GTTTGTGGGTGACTTGGTGCACGGCGCCCGGCAGGTGATGGAGGAGAGGG
GGGAGGACGGGGCAATAGCACCCGCGAGGCTGCGGGAAGCCTTGAGACGG
GCAGTGAGGGAGAAGAGGCTGCCGGTGATGCGAGGAGCGCTACGACCCCC
TCTTCCTCCCTTCCCTTGAGGAAATTGAAACAATCAAATAATCAAATTGA
GGAGCTAGTCTGATGGGAGTCAAACAGGGAGGAGGAATCGACTGTTGAAG
GCGAGGAAGGAACCACTTTTCATTACTACTGCGAGCAGATAGATCAAAAG
GCGACGGAAAGCATAAATTAAC
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protein sequence of NO23G00570.1

>NO23G00570.1-protein ID=NO23G00570.1-protein|Name=NO23G00570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=223bp
MKRGRTGSIDLFSDQSYSIGASPSSSSSSPARHGGGEALGRTSSARSDGG
GSAAGAAAGGGMGGGMDDEATRQKVLHAERMRIAMANMSEGQKERFEFFR
RSHFHRDTIKKIMLESFSRIREGSTYPRSAAVASAAAPGRGGDEGGEGLG
VDMNEQMVIVMSALCKLFVGDLVHGARQVMEERGEDGAIAPARLREALRR
AVREKRLPVMRGALRPPLPPFP*
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Synonyms
Publications