NO23G00530, NO23G00530 (gene) Nannochloropsis oceanica
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Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO23G00530 vs. NCBI_GenBank
Match: CBN76670.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 79.3 bits (194), Expect = 1.100e-10 Identity = 125/607 (20.59%), Postives = 192/607 (31.63%), Query Frame = 0
Query: 31 AGTRCLQLLGSLRNGSDAGRIKALKNFQDYVDRHKPEFYDDDVDLLFLGSPSLDGLLAWAGHKHSTGSSSRRRCKEGGXXXXXXXXXXXNLKKVSKFALKLVHWLVVXXXXXXXXXXXXXXXXXXXFLELSENDLPQMEL------SXXXXXXXXXXXXXXXXEALELLSLLLTRHKCTLPEGXXXXXXXXXXXXXXXXXXXXXXXXXVQLRFIQWLQQSA-----------SEEDLRXXXXXXXXXXXXXXXXXXXXXXXXXGVLDPLGLNKINVNFEWQGSXXXXXXXXXXXXXXXXXXMVGTKEQIFL---------LQKLQLATVGGE--------------------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASSIVPQDEGFDPLLFLSVVHGGSSWEEVVKGQGYLERSLGTQASALQQLVRDHYEAFVRCADGIHWLKDMVASQQFLSLACTHGRGREGG---------------REGGSXXXXXXXXXXXXXXXXXXXXXXXLDPMLKMTHATREEATRLFLPLLLALERQKRTRARRVLLQRLAKVLDVPARMKLNEQRGNYQEVVREYQR 571
AG + + L + R KALK F+ +V++ EFYDDDVD L LG GL+ W G + STG+ LK+ + A+ L+ WLV FL+++ DL +M L + EA E++SL+L RH+ L E + F+ WLQ++A S+++ R P G+N + W + ++ L+ Q V G+ G S+VP E FDP LF++VVH +S+ ++ G L+ + QAS LQ LVRDH+++FVRCAD I + AS + L+ + +E E L + ++ R EA + LL L+ K+ RA + LL +LD+P M G Y E+V+ Y++
Sbjct: 8 AGVEIQRFITGLNASKHSAREKALKAFRAFVEKQGMEFYDDDVDSLLLGDGYTMGLMQWCG-ESSTGTQGA-------------------LKRTAATAISLLKWLV-----SLRDPSGDENIFLARFLQVALEDLRKMRLELHLLITGTQKGSKASSRGGNSEEACEIVSLVLQRHRDDLGEA------------EEISVEELLPGEEARKIFMDWLQRTAMGKQDTLRLNPSDQERRRYPDAGVGGSTEGSTRNNDEGAGEAADDGPDGVNDDDTPLTWAEVDQEQFVALNSRASPVAVDLAAKADEPVADPLGLKQVDLRVYQKTLVEGDTSAVVEVDGADREVSGTLQAKKRALLGQKDRLRLLKKMQSGKERVQRKMDRKRSDKGERMRDGEIGSVPESNRSVVPTMEDFDPALFMTVVHATASFNDIRNGLESLDGAKANQASELQHLVRDHFDSFVRCADSI----EKYASHINMELSKNKEQPKEKAPSRPKTLAQLRMQLKAEREVEGQSRPAGAVGETWTGAGPAKSHLKELTRLMEGARTEAGKNTSQLLQKLDNIKQVRAAQHLLSEKGSILDIPREMSACMADGRYMELVKLYRK 573
BLAST of NO23G00530 vs. NCBI_GenBank
Match: OEU14538.1 (hypothetical protein FRACYDRAFT_241085 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 73.2 bits (178), Expect = 8.000e-9 Identity = 51/194 (26.29%), Postives = 85/194 (43.81%), Query Frame = 0
Query: 384 SIVPQDEGFDPLLFLSVVHGGSSWEEVVKGQGYLERSLGTQASALQQLVRDHYEAFVRCADGIHWLKDMVASQQFLSLACTHGRGREGGREGGSXXXXXXXXXXXXXXXXXXXXXXXLDPMLKMTHATREEATRLFLPLLLALERQKRTRARRVLLQRLAKVLDVPARMKLNEQRGNYQEVVREYQRVRALPPS 578
SI+P D FDP+LFL++VH G+S+EE+V L Q + LQ +VR+++ F+RCADGI + SQ G G L+ + + + +A + F PLL + ++ +L R+ VL P M+ + + G + ++ Y+RV+ + S
Sbjct: 476 SILPTDGSFDPILFLTLVHRGASYEELVGSMNRLSTDTQNQVAQLQDMVRENFALFLRCADGIDTFNEKTLSQS--------GPG----------------------------VVDRLNRLDALAESCAHQAKKSFKPLLDNANEVHKVQSALAVLHRVEGVLQAPYLMRQHVENGRFSAALKAYRRVQVIDDS 633
BLAST of NO23G00530 vs. NCBI_GenBank
Match: XP_002286248.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95889.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 68.6 bits (166), Expect = 2.000e-7 Identity = 48/191 (25.13%), Postives = 89/191 (46.60%), Query Frame = 0
Query: 381 GASSIVPQDEGFDPLLFLSVVHGGSSWEEVVKGQGYLERSLGTQASALQQLVRDHYEAFVRCADGIHWLKDMVASQQFLSLACTHGRGREGGREGGSXXXXXXXXXXXXXXXXXXXXXXXLDPMLKMTHATREEATRLFLPLLLALERQKRTRARRVLLQRLAKVLDVPARMKLNEQRGNYQEVVREYQRV 572
G SI+P + FDP+LFL++ H ++++E+ L R +Q LQ LVRD++ F++C++GI D+ A Q L G R+ + + + ++A + F PLL ++ ++ +LQR+A +L VP+ M+ + + ++ VV+ Y++V
Sbjct: 422 GLPSILPTNPDFDPILFLTLCHRNATYQELQDSTSRLSRKTDSQVERLQNLVRDNFALFIKCSEGI----DVFAEQSDLQ------DSNSGMRK----------------------LQHCFQTLDGIADSCSDQARKSFKPLLDNTNEVRKVQSALAVLQRVAPLLQVPSLMRQHIENASFSSVVKAYRKV 580
BLAST of NO23G00530 vs. NCBI_GenBank
Match: XP_001691926.1 (component of the exocyst complex, partial [Chlamydomonas reinhardtii]) HSP 1 Score: 67.0 bits (162), Expect = 5.700e-7 Identity = 66/193 (34.20%), Postives = 90/193 (46.63%), Query Frame = 0
Query: 382 ASSIVPQDEGFDPLLFLSVVHGGSSWEEVVKGQGYLERSLGTQASALQQLVRDHYEAFVRCADGIHWLKDMVASQQFLSLACTHGRGREGGREGGSXXXXXXXXXXXXXXXXXXXXXXXLDPMLKMTHATREEATRLFLPLLLALERQKRTRARRVLLQRLAKVLDVPARMKLNEQRGNYQEVVREYQRVRAL 575
A ++P EGF+P +L+ HG SS ++ KG L R L + L+ L+R++++ F+ C D I D+ A L G G G XXXXXXXXXXXX D + + A R F P+L + R RA LLQR + PAR+ RG +VVREY+R L
Sbjct: 297 ARKVLPNQEGFEPEAYLAAFHGDSSRSQLEKGLRSLSRELSERTGQLKLLIRNNFDRFINCKDAI---DDIHAK---LRKMLVRGAGPSTG----------PGAXXXXXXXXXXXXAVGTDRVFRSLEQVENNARRTFGPILDRAAKADRIRAVAGLLQRFDALFAAPARVMELAGRGELDQVVREYKRANML 473
BLAST of NO23G00530 vs. NCBI_GenBank
Match: PNW72046.1 (hypothetical protein CHLRE_16g684600v5 [Chlamydomonas reinhardtii]) HSP 1 Score: 67.0 bits (162), Expect = 5.700e-7 Identity = 66/193 (34.20%), Postives = 90/193 (46.63%), Query Frame = 0
Query: 382 ASSIVPQDEGFDPLLFLSVVHGGSSWEEVVKGQGYLERSLGTQASALQQLVRDHYEAFVRCADGIHWLKDMVASQQFLSLACTHGRGREGGREGGSXXXXXXXXXXXXXXXXXXXXXXXLDPMLKMTHATREEATRLFLPLLLALERQKRTRARRVLLQRLAKVLDVPARMKLNEQRGNYQEVVREYQRVRAL 575
A ++P EGF+P +L+ HG SS ++ KG L R L + L+ L+R++++ F+ C D I D+ A L G G G XXXXXXXXXXXX D + + A R F P+L + R RA LLQR + PAR+ RG +VVREY+R L
Sbjct: 297 ARKVLPNQEGFEPEAYLAAFHGDSSRSQLEKGLRSLSRELSERTGQLKLLIRNNFDRFINCKDAI---DDIHAK---LRKMLVRGAGPSTG----------PGAXXXXXXXXXXXXAVGTDRVFRSLEQVENNARRTFGPILDRAAKADRIRAVAGLLQRFDALFAAPARVMELAGRGELDQVVREYKRANML 473 The following BLAST results are available for this feature:
BLAST of NO23G00530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 5
Relationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO23G00530 ID=NO23G00530|Name=NO23G00530|organism=Nannochloropsis oceanica|type=gene|length=5984bpback to top protein sequence of NO23G00530.1 >NO23G00530.1-protein ID=NO23G00530.1-protein|Name=NO23G00530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1520bpback to top Synonyms
Publications
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