NO23G00480, NO23G00480 (gene) Nannochloropsis oceanica

Overview
NameNO23G00480
Unique NameNO23G00480
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1073
Alignment locationchr23:206320..207392 +

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Properties
Property NameValue
DescriptionU6 snRNA-associated Sm-like protein LSm7
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:206320..207392 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom
IPR001163Ribonucl_LSM
Vocabulary: Biological Process
TermDefinition
GO:0009056catabolic process
GO:0006139nucleobase-containing compound metabolic process
Homology
[Close]
BLAST of NO23G00480 vs. NCBI_GenBank
Match: XP_005854263.1 (U6 snRNA-associated Sm-like protein LSm7 [Nannochloropsis gaditana CCMP526] >EKU22098.1 U6 snRNA-associated Sm-like protein LSm7 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 144.4 bits (363), Expect = 1.900e-31
Identity = 67/76 (88.16%), Postives = 75/76 (98.68%), Query Frame = 0 
Query:   25 GGREVSGILKGFDQLINLVLDESKETLRDPADPYRLTEDTRDLGLLVCRGTQVSLISPVEGTEEIANPFVQAEDEA 101
            GGREV+GIL+GFDQLINLVLDESKETLRDP DPYRLT++TR+LGL++CRGTQVSLISPVEGTEEIANPF+QAEDEA
Sbjct:    2 GGREVTGILRGFDQLINLVLDESKETLRDPLDPYRLTDETRELGLVICRGTQVSLISPVEGTEEIANPFIQAEDEA 77
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BLAST of NO23G00480 vs. NCBI_GenBank
Match: XP_011399640.1 (U6 snRNA-associated Sm-like protein LSm7 [Auxenochlorella protothecoides] >KFM26702.1 U6 snRNA-associated Sm-like protein LSm7 [Auxenochlorella protothecoides])

HSP 1 Score: 142.9 bits (359), Expect = 5.400e-31
Identity = 66/97 (68.04%), Postives = 80/97 (82.47%), Query Frame = 0 
Query:    4 KKDTVLDLNKYLDKAVRVRFQGGREVSGILKGFDQLINLVLDESKETLRDPADPYRLTEDTRDLGLLVCRGTQVSLISPVEGTEEIANPFVQAEDEA 101
            KKD  LDL+K +DK VRV+  GGREV G+LKGFDQL+NLVLDES E LRD  DP R+T++TR LGL+VCRGT V+L++P  GTEEIANPF+Q E+EA
Sbjct:    7 KKDNALDLSKLVDKTVRVKLAGGREVEGVLKGFDQLLNLVLDESTEFLRDAEDPLRVTDETRTLGLVVCRGTSVTLVAPTAGTEEIANPFIQPEEEA 103
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BLAST of NO23G00480 vs. NCBI_GenBank
Match: CBN77401.1 (Sm-like protein LSm7 [Ectocarpus siliculosus])

HSP 1 Score: 142.1 bits (357), Expect = 9.300e-31
Identity = 65/94 (69.15%), Postives = 80/94 (85.11%), Query Frame = 0 
Query:    4 KKDTVLDLNKYLDKAVRVRFQGGREVSGILKGFDQLINLVLDESKETLRDPADPYRLTEDTRDLGLLVCRGTQVSLISPVEGTEEIANPFVQAE 98
            +++TVLDL KYLD+ VRV+ QGGREV G+LKGFD L+N+VLDE  E +RDP DPY+LTE+TR+LGL+VCRGTQVSLISP +G EEI NPF+  E
Sbjct:    8 ERETVLDLQKYLDQGVRVKLQGGREVHGVLKGFDPLVNVVLDECIEFIRDPTDPYKLTEETRELGLVVCRGTQVSLISPRDGMEEIENPFMAPE 101
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BLAST of NO23G00480 vs. NCBI_GenBank
Match: XP_005093909.1 (PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Aplysia californica])

HSP 1 Score: 141.7 bits (356), Expect = 1.200e-30
Identity = 64/92 (69.57%), Postives = 78/92 (84.78%), Query Frame = 0 
Query:    6 DTVLDLNKYLDKAVRVRFQGGREVSGILKGFDQLINLVLDESKETLRDPADPYRLTEDTRDLGLLVCRGTQVSLISPVEGTEEIANPFVQAE 98
            +++LDLNKYLDK +RV+F GGRE SGILKGFDQL+NLVLD + E LRDP DP++LTEDTR+LGL+VCRGT V LI P +G E IANPF+Q +
Sbjct:   26 ESILDLNKYLDKPIRVKFSGGREASGILKGFDQLLNLVLDGTTEYLRDPDDPFKLTEDTRNLGLVVCRGTSVVLICPADGMEAIANPFIQQD 117
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BLAST of NO23G00480 vs. NCBI_GenBank
Match: XP_018021601.1 (PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Hyalella azteca])

HSP 1 Score: 141.7 bits (356), Expect = 1.200e-30
Identity = 64/94 (68.09%), Postives = 80/94 (85.11%), Query Frame = 0 
Query:    4 KKDTVLDLNKYLDKAVRVRFQGGREVSGILKGFDQLINLVLDESKETLRDPADPYRLTEDTRDLGLLVCRGTQVSLISPVEGTEEIANPFVQAE 98
            +K+T+LDL+KYLDK ++V+F GGRE SG+LKG+DQLINLVLD + E LRDP DPY+LTEDT++ GL+VCRGT V LI P++G E IANPF QAE
Sbjct:   30 RKETILDLSKYLDKTIKVKFFGGREASGVLKGYDQLINLVLDNTVEYLRDPDDPYKLTEDTKERGLVVCRGTAVVLICPMDGCEAIANPFTQAE 123
[Close]
BLAST of NO23G00480 vs. NCBI_GenBank
Match: XP_022099828.1 (U6 snRNA-associated Sm-like protein LSm7 [Acanthaster planci])

HSP 1 Score: 141.4 bits (355), Expect = 1.600e-30
Identity = 64/94 (68.09%), Postives = 80/94 (85.11%), Query Frame = 0 
Query:    4 KKDTVLDLNKYLDKAVRVRFQGGREVSGILKGFDQLINLVLDESKETLRDPADPYRLTEDTRDLGLLVCRGTQVSLISPVEGTEEIANPFVQAE 98
            KK+++LDL+KY+DK  RV+FQGGREV+GILKGFD L+NLVLD + E  RDP DPY++TEDTRDLGL+VCRGT + LI P +G E+IANPF+Q E
Sbjct:   36 KKESILDLSKYIDKPTRVKFQGGREVTGILKGFDPLLNLVLDGTTEFQRDPDDPYKITEDTRDLGLVVCRGTSLVLICPEDGMEQIANPFLQQE 129
[Close]
BLAST of NO23G00480 vs. NCBI_GenBank
Match: XP_011455854.1 (PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Crassostrea gigas] >XP_011436522.1 PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Crassostrea gigas] >EKC19551.1 U6 snRNA-associated Sm-like protein LSm7 [Crassostrea gigas] >EKC25982.1 U6 snRNA-associated Sm-like protein LSm7 [Crassostrea gigas])

HSP 1 Score: 141.0 bits (354), Expect = 2.100e-30
Identity = 64/93 (68.82%), Postives = 77/93 (82.80%), Query Frame = 0 
Query:    5 KDTVLDLNKYLDKAVRVRFQGGREVSGILKGFDQLINLVLDESKETLRDPADPYRLTEDTRDLGLLVCRGTQVSLISPVEGTEEIANPFVQAE 98
            K+T+LDL KYLDK +RV+F GGRE +G+LKG+D L+NLVLD++ E LRDP DPY+LTEDTR LGL+VCRGT V LI P +G E IANPFVQ E
Sbjct:   21 KETILDLAKYLDKTIRVKFSGGREAAGVLKGYDPLLNLVLDDTTEYLRDPDDPYKLTEDTRTLGLVVCRGTSVVLICPADGMEAIANPFVQQE 113
[Close]
BLAST of NO23G00480 vs. NCBI_GenBank
Match: XP_002402270.1 (small nuclear ribonucleoprotein (snRNP) splicing factor [Ixodes scapularis] >EEC05942.1 small nuclear ribonucleoprotein (snRNP) splicing factor [Ixodes scapularis])

HSP 1 Score: 140.6 bits (353), Expect = 2.700e-30
Identity = 63/94 (67.02%), Postives = 80/94 (85.11%), Query Frame = 0 
Query:    4 KKDTVLDLNKYLDKAVRVRFQGGREVSGILKGFDQLINLVLDESKETLRDPADPYRLTEDTRDLGLLVCRGTQVSLISPVEGTEEIANPFVQAE 98
            +K++++DL+KYLDKA+RV+FQGGRE +GILKG+D L+NLV+D + E LRDP DPY+LTEDTR LGL+VCRGT V +I PV+G E I NPFVQ E
Sbjct:   13 RKESIVDLSKYLDKAIRVKFQGGREATGILKGYDPLLNLVIDNATEYLRDPDDPYKLTEDTRTLGLVVCRGTAVVVICPVDGMESIPNPFVQHE 106
[Close]
BLAST of NO23G00480 vs. NCBI_GenBank
Match: XP_009058227.1 (hypothetical protein LOTGIDRAFT_122513, partial [Lottia gigantea] >ESO90955.1 hypothetical protein LOTGIDRAFT_122513, partial [Lottia gigantea])

HSP 1 Score: 140.2 bits (352), Expect = 3.500e-30
Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 0 
Query:    4 KKDTVLDLNKYLDKAVRVRFQGGREVSGILKGFDQLINLVLDESKETLRDPADPYRLTEDTRDLGLLVCRGTQVSLISPVEGTEEIANPFVQAE 98
            KK+++LDL+KYLDK +RV+F GGRE +G+LKGFD L+NLVLD + E LRDP DPY+LTEDTR LGL+VCRGT V LI P +G E IANPFVQ +
Sbjct:    6 KKESILDLSKYLDKPIRVKFSGGREATGMLKGFDPLLNLVLDGTTEFLRDPDDPYKLTEDTRQLGLVVCRGTSVVLICPADGMEAIANPFVQQD 99
[Close]
BLAST of NO23G00480 vs. NCBI_GenBank
Match: NP_079625.1 (U6 snRNA-associated Sm-like protein LSm7 isoform 4 [Mus musculus] >XP_021061153.1 U6 snRNA-associated Sm-like protein LSm7 [Mus pahari] >XP_021030434.1 U6 snRNA-associated Sm-like protein LSm7 [Mus caroli] >Q9CQQ8.1 RecName: Full=U6 snRNA-associated Sm-like protein LSm7 >BAB22540.1 unnamed protein product [Mus musculus] >BAB25051.1 unnamed protein product [Mus musculus] >BAB28245.1 unnamed protein product [Mus musculus] >BAB28806.1 unnamed protein product [Mus musculus] >AAH27511.1 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus musculus] >AAH81444.1 LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus musculus] >EDL31483.1 mCG12127, isoform CRA_d [Mus musculus] >EDL31737.1 mCG5973 [Mus musculus])

HSP 1 Score: 139.8 bits (351), Expect = 4.600e-30
Identity = 64/95 (67.37%), Postives = 78/95 (82.11%), Query Frame = 0 
Query:    4 KKDTVLDLNKYLDKAVRVRFQGGREVSGILKGFDQLINLVLDESKETLRDPADPYRLTEDTRDLGLLVCRGTQVSLISPVEGTEEIANPFVQAED 99
            KK+++LDL+KY+DK +RV+FQGGRE SGILKGFD L+NLVLD + E +RDP D Y+LTEDTR LGL+VCRGT V LI P +G E I NPFVQ +D
Sbjct:    8 KKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFVQQQD 102
The following BLAST results are available for this feature:
BLAST of NO23G00480 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854263.11.900e-3188.16U6 snRNA-associated Sm-like protein LSm7 [Nannochl... [more]
XP_011399640.15.400e-3168.04U6 snRNA-associated Sm-like protein LSm7 [Auxenoch... [more]
CBN77401.19.300e-3169.15Sm-like protein LSm7 [Ectocarpus siliculosus][more]
XP_005093909.11.200e-3069.57PREDICTED: U6 snRNA-associated Sm-like protein LSm... [more]
XP_018021601.11.200e-3068.09PREDICTED: U6 snRNA-associated Sm-like protein LSm... [more]
XP_022099828.11.600e-3068.09U6 snRNA-associated Sm-like protein LSm7 [Acanthas... [more]
XP_011455854.12.100e-3068.82PREDICTED: U6 snRNA-associated Sm-like protein LSm... [more]
XP_002402270.12.700e-3067.02small nuclear ribonucleoprotein (snRNP) splicing f... [more]
XP_009058227.13.500e-3068.09hypothetical protein LOTGIDRAFT_122513, partial [L... [more]
NP_079625.14.600e-3067.37U6 snRNA-associated Sm-like protein LSm7 isoform 4... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00480.1NO23G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601865gene_8390Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00480.1NO23G00480.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00480 ID=NO23G00480|Name=NO23G00480|organism=Nannochloropsis oceanica|type=gene|length=1073bp
ATGgtaggtgaagatacctcggtgcggtgaggatgttgcaacatgacaag
gcgtagagggtaaagccacccaagtttctgggcaagggttccgggagcaa
ggatgtatacagcgcctcttccattccctcgatgtcaggctggcaagggt
gtccaaccgttttttcttttagcacttgcagacccgctctcttctctctt
gaagacccccccattccctccttctcccctccctccctccaactcaccca
ccctttaaaagGCAACCAAGAAAGACACTGTCCTCGACTTGAATAAGTAC
TTGGACAAAGCCGTGCGTGTGCGATTCCAGGGCGGGCGGGAAGgtgcgta
tgtctacttggcgtggcggcggtgtgtgtaacgtaggtgtgtaggaccga
gagggcaaggaaaggattgaggagagtgctgcgtgggtgtatgacggtag
tgccagtggcatatgtatgtgcaaaggtgtgtgctgccaagactagcgga
atagcgtgccgtgcgggggtgagtgtaatgggaccgctagagaaggaggg
tcatcttgtgtaggtatgtctatgtaggggtaaacgcagaaagctgaacc
cgtttctaagatcctatcctcttttttcacgcgcccaaatcgtctccctc
ggcatcgaccctcttctcccccaataccatcccttacatccctccctccc
tccctccctccctccctccctccttccctccctccctccgtctcttcctc
ccagTGAGCGGCATTCTGAAGGGCTTCGACCAACTCATCAACCTGGTGCT
AGATGAGAGCAAGGAGACCCTCAGAGgtacaccacaccacttattcccct
ttctcagtctaccccctcgtcaccctcaatggccattctctcactctttc
tccccgttcttctttccccccttttagACCCCGCAGATCCCTACCGACTC
ACGGAGGATACGCGGGACTTGGGCTTGCTCGTCTGTCGAGGGACGCAAGT
GTCCCTCATAAGTCCGGTGGAGGGCACAGAGGAGATAGCCAATCCTTTCG
TTCAAGCAGAGGATGAGGCATGA
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protein sequence of NO23G00480.1

>NO23G00480.1-protein ID=NO23G00480.1-protein|Name=NO23G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MATKKDTVLDLNKYLDKAVRVRFQGGREVSGILKGFDQLINLVLDESKET
LRDPADPYRLTEDTRDLGLLVCRGTQVSLISPVEGTEEIANPFVQAEDEA
*
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Synonyms
Publications