NO23G00420, NO23G00420 (gene) Nannochloropsis oceanica

Overview
NameNO23G00420
Unique NameNO23G00420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1559
Alignment locationchr23:187493..189051 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:187493..189051 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO23G00420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00420.1NO23G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|194063gene_8382Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00420.1NO23G00420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00420 ID=NO23G00420|Name=NO23G00420|organism=Nannochloropsis oceanica|type=gene|length=1559bp
TGCCAAGTGTAAGTTGTACGGATCTGTCCTCTCAGTGGGTGATTGCTGTT
GTTGAAAAGGCAACGTACGAGACCCGGCTGATATGCGGGCTTGGGCTGGG
GCTGCTTTAGCATTGCGTGACGAACTCTCCCCATCCTCAGTTAGCCAAGT
AAAGCCCACACGCAGACACCCCTACATACTCGCTTTCACACAAACATATA
AAGAGTATTAACAGATGTGGGCGTCGGCCCTGCGGAGGTGTATGCGGGTT
TGGGTTGTGCCTCCATTAACAACACCAGCGCAAGCTGCGGAACAAATTCG
ACCTCCTCCCTCCGCTGCTGCTGCTGCTCCTGCTGCTGCTGCTGCTGCTG
CTGCTGGTGGTGGTGGTCTCGCATCATCTATACCACAATCCCCCCGACCG
TTTGCGGCATCTCCAAAACCTTCTTCTGATAGAATAGAGCAAACTCATTC
TCTAACCACAACCTCCCTTTCCGCCTGGCCTGTTCTACTATGGCACTTCG
ACGAAGCCGTCCTCCCTCCCTCCTTCCCTCCTTCCAGCCCTCCCTTCCCA
ATTTCTTCTTCCTCCCTTATAAGCAAGAAAAAAGAAAACCAACGGCTGCT
TCGCAATCTTTTTCACGTCCTGCCTGATGATGTGCTCACTAATTTGGGCC
CGTCACTATACATgtacgttgaggttacctccctccgtcgagtacctggc
acagagagccccctttctcctctttatttttccccctctctccctccccc
ctcccttcccgtctctctccttcccttcatctcttccttattctatatcc
ttcaacaaatcattcatcatcatcctcccacgttctcctaccctccctcc
cttcctccctcctcttctgcagGTCAGCCGTCCGTCAGAATCTCGTCTCT
CCCTGGGGCGGATGGAGAGAGGGGCTGGCAGGCGGGAGTAATAGAAGGGT
GTTATTGGTTGATTTACACGGACACAGCGTCCGGCTCGCCCTTTTTGGAG
CCTTGCCGTTTGTGTGGGAAAAAATAGACGGAAGGAAGGAGGGAGGGAGG
GAGGGAGGAGGGATCACGCATGTGGTGACGGGCCATGGTCGAGGGAGGAA
AAGGAGGGAGGGAGGGGTAGGGTGGAAGAAAGAGGGGGAGAGAAGAAGGA
AGAGAGGAGGGGAGAAGGAAGCCATTTTTTCATGTCCTCTGGCTTCTCCT
TCCAGCTCCTCCTCCCTCCCGCCCTCCTCCTCCTCCTCCGTGCTCTACAG
CGCTGTCTTCAATTGGATTTCTGAAGCAGTAAAGAAGGACGAGGACGGAG
GGAGGGAGGGAGGAAGGGAGGGATCGGTTGTGTGGAAGGAAAGTAAAGGG
TGCGTGGGCGTAAGGATGGGAGCAGTGCGAGACAGAAGGAGGTAGATAGA
TTTGATACGTTGTTTCAACATGGAAGATCACACTTGATTTGAATATTTTA
ATTCAAAGAACGAATTGTTAATAAATTTTTGAAAAAGAATATCGTGGTAA
ACACGAGTAAAAAAATAAATGGAAGAAATGAAAGAAAAAGAAAAAACATC
CGCACTCAG
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protein sequence of NO23G00420.1

>NO23G00420.1-protein ID=NO23G00420.1-protein|Name=NO23G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MWASALRRCMRVWVVPPLTTPAQAAEQIRPPPSAAAAAPAAAAAAAAGGG
GLASSIPQSPRPFAASPKPSSDRIEQTHSLTTTSLSAWPVLLWHFDEAVL
PPSFPPSSPPFPISSSSLISKKKENQRLLRNLFHVLPDDVLTNLGPSLYM
SAVRQNLVSPWGGWREGLAGGSNRRVLLVDLHGHSVRLALFGALPFVWEK
IDGRKEGGREGGGITHVVTGHGRGRKRREGGVGWKKEGERRRKRGGEKEA
IFSCPLASPSSSSSLPPSSSSSVLYSAVFNWISEAVKKDEDGGREGGREG
SVVWKESKGCVGVRMGAVRDRRR*
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Synonyms
Publications