NO23G00310, NO23G00310 (gene) Nannochloropsis oceanica

Overview
NameNO23G00310
Unique NameNO23G00310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2326
Alignment locationchr23:150163..152488 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:150163..152488 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO23G00310 vs. NCBI_GenBank
Match: OEU13080.1 (hypothetical protein FRACYDRAFT_270351 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 75.1 bits (183), Expect = 3.500e-10
Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = 0
Query:  151 FVPEHLHKVVIYKTKGIKPLSRGQRFVYTFVREHYILPHDLESNSKYGPLSGRSFEERAIAAYMHDQL--ERKPRYKALPADSTDLLACVTCAGLGHHPRHCPQ 253
            +VP ++HK V Y  +G   LS   + V+ F+ EHY++P + ES+   GPLSG  FE R + AY    L       Y++    +TD+  C  CA LGH    CP+
Sbjct:  111 YVPIYIHKNVNYLRRGEATLSETIQKVFDFIEEHYVIPSNFESDRSMGPLSGTCFEVRVVEAYERGLLLSANSTEYQS----TTDITICSHCADLGHVGDDCPK 210          
BLAST of NO23G00310 vs. NCBI_GenBank
Match: GAX12254.1 (hypothetical protein FisN_1Hu185 [Fistulifera solaris])

HSP 1 Score: 74.7 bits (182), Expect = 4.600e-10
Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 0
Query:  149 AKFVPEHLHKVVIYKTKGIKPLSRGQRFVYTFVREHYILPHDLESNSKYGPLSGRSFEERAIAAYMHDQLERKPRYKALPADSTDLLACVTCAGLGHHPRHCP 252
            ++FVP+++HK V Y  +G   L      VY ++RE Y +P D E    +GPLSG S+E+R I  Y   +L+RK   +  P D T  L C  CA  GH    CP
Sbjct:   82 SQFVPKYIHKNVEYCREGSSTLPSKTIQVYQWIRERYKIPSDFEQQRFFGPLSGTSYEQRVITEYKLGKLDRK---EDAPDDET--LICSGCAQTGHLRDDCP 179          
BLAST of NO23G00310 vs. NCBI_GenBank
Match: XP_002286944.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED96585.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 73.6 bits (179), Expect = 1.000e-9
Identity = 34/100 (34.00%), Postives = 53/100 (53.00%), Query Frame = 0
Query:  151 FVPEHLHKVVIYKTKGIKPLSRGQRFVYTFVREHYILPHDLESNSKYGPLSGRSFEERAIAAYMHDQLERKPRYKALPADSTDLLACVTCAGLGHHPRHC 251
            + P H++  V +  +G   L +G+   Y F+R HY++P   E++ ++GP SG  FEER I +Y   +LE K  Y+ +  D + L  C  C   GH    C
Sbjct:  103 YKPTHIYANVGFHCRGDLALDKGKLKAYRFIRNHYLIPLTFETDRQFGPHSGSCFEERVITSYSLGKLELKDEYRGV-VDESSLFVCSHCGDEGHKRDGC 201          
BLAST of NO23G00310 vs. NCBI_GenBank
Match: XP_008909310.1 (hypothetical protein PPTG_14095 [Phytophthora parasitica INRA-310] >ETI40808.1 hypothetical protein F443_13886 [Phytophthora parasitica P1569] >ETK80917.1 hypothetical protein L915_13526 [Phytophthora parasitica] >ETL34334.1 hypothetical protein L916_13424 [Phytophthora parasitica] >ETL87613.1 hypothetical protein L917_13232 [Phytophthora parasitica] >ETM40840.1 hypothetical protein L914_13323 [Phytophthora parasitica] >ETN05335.1 hypothetical protein PPTG_14095 [Phytophthora parasitica INRA-310] >ETO69511.1 hypothetical protein F444_13918 [Phytophthora parasitica P1976] >ETP10551.1 hypothetical protein F441_13819 [Phytophthora parasitica CJ01A1] >ETP38751.1 hypothetical protein F442_13718 [Phytophthora parasitica P10297])

HSP 1 Score: 70.1 bits (170), Expect = 1.100e-8
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 0
Query:  152 VPEHLHKVVIYKTKGIK-PLSRGQRFVYTFVREHYILPHDLESNSKYGPLSGRSFEERAIAAYMHDQLERKPRYKALPADSTDLLACVTCAGLGHHPRHCPQG 254
            +P  ++K V YK K  K  +S+  + +  +++++Y +P DLE+N K+G  SG ++E+R   AY  DQL  K   K   A       C+TCA +GH  + CP G
Sbjct:   52 IPTFIYKTVKYKHKHKKHEVSKEMKTIVEYIKKYYDVPKDLETNVKFGCHSGLTYEKRLARAYSMDQLSLKHGKKNGAAPKP---ICLTCASVGHTHKTCPDG 151          
BLAST of NO23G00310 vs. NCBI_GenBank
Match: XP_024577628.1 (hypothetical protein PHYSODRAFT_523199 [Plasmopara halstedii] >CEG41259.1 hypothetical protein PHYSODRAFT_523199 [Plasmopara halstedii])

HSP 1 Score: 67.8 bits (164), Expect = 5.600e-8
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 0
Query:  152 VPEHLHKVVIYKTKGIK-PLSRGQRFVYTFVREHYILPHDLESNSKYGPLSGRSFEERAIAAYMHDQLERKPRYK--ALPADSTDLLACVTCAGLGHHPRHCPQG 254
            +P  +++ V YK K  K   S+  + +  ++++HY +P D E N+K+G  SG +FE+R   AY+  QL+ K   K  A+P        C+TCA +GH  + CP G
Sbjct:   31 IPVFIYEFVKYKAKHEKHETSKKLKTIVEYIKKHYDVPKDFEVNAKFGCHSGLTFEKRLTRAYLMGQLDLKHEKKGGAMPKP-----ICLTCATVGHTYKTCPDG 130          
BLAST of NO23G00310 vs. NCBI_GenBank
Match: XP_002181689.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46903.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 66.6 bits (161), Expect = 1.300e-7
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 0
Query:  150 KFVPEHLHKVVIYKTKG-IKPLSRGQRFVYTFVREHYILPHDLESNSKYGPLSGRSFEERAIAAYMHDQLERKPRYKALPADSTDLLACVTCAGLGHHPRHCP 252
            ++VP +LH+ + Y+ +G  K L    R     + ++Y +P +LE + KYGPLSG ++EE  + AY    L  K    A+ ++  D+  C  CA LGH    CP
Sbjct:   87 EYVPRYLHQTLDYQRRGQKKDLPTHTRTALALIEQYYEIPANLEQSRKYGPLSGTTYEELVLQAYTLGTLAVKKEDGAIVSE-VDI--CTECAVLGHRRGECP 186          
BLAST of NO23G00310 vs. NCBI_GenBank
Match: ETI40809.1 (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >ETK80918.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL34335.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETL87614.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETM40841.1 hypothetical protein, variant 1 [Phytophthora parasitica] >ETO69512.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976] >ETP10552.1 hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1] >ETP38752.1 hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 65.1 bits (157), Expect = 3.600e-7
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 0
Query:  152 VPEHLHKVVIYKTKGIK-PLSRGQRFVYTFVREHYILPHDLESNSKYGPLSGRSFEERAIAAYMHDQLERKPRYKALPADSTDLLACVTCAGLGHHPRHCPQG 254
            +P  ++K V YK K  K  +S+  + +  +++ +Y +P DLE+N K+G  SG ++E+R   AY  DQL  K   K   A       C+TCA +GH  + CP G
Sbjct:   52 IPTFIYKTVKYKHKHKKHEVSKEMKTIVEYIK-YYDVPKDLETNVKFGCHSGLTYEKRLARAYSMDQLSLKHGKKNGAAPKP---ICLTCASVGHTHKTCPDG 150          
BLAST of NO23G00310 vs. NCBI_GenBank
Match: XP_009534518.1 (hypothetical protein PHYSODRAFT_523199 [Phytophthora sojae] >EGZ09657.1 hypothetical protein PHYSODRAFT_523199 [Phytophthora sojae])

HSP 1 Score: 64.3 bits (155), Expect = 6.200e-7
Identity = 34/103 (33.01%), Postives = 56/103 (54.37%), Query Frame = 0
Query:  152 VPEHLHKVVIYKTKGIK-PLSRGQRFVYTFVREHYILPHDLESNSKYGPLSGRSFEERAIAAYMHDQLERKPRYKALPADSTDLLACVTCAGLGHHPRHCPQG 254
            +P  +++ V YK K  K  +S     V  +++++Y +P D E N+K+G  SG ++ +R   AY   QL  K   KA+  ++     C+TCA +GH  + CP G
Sbjct:   31 IPTFIYETVKYKHKHQKHEVSPELNDVILYIKQYYDVPKDFERNAKFGAYSGLTYGKRLARAYSMGQLSLK---KAVKGEAAPQPICLTCATVGHTYKCCPDG 130          
BLAST of NO23G00310 vs. NCBI_GenBank
Match: EJK47483.1 (hypothetical protein THAOC_33790 [Thalassiosira oceanica])

HSP 1 Score: 64.3 bits (155), Expect = 6.200e-7
Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = 0
Query:  153 PEHLHKVVIYKTKGIKPLSRGQRFVYTFVREHYILPHDLESNSKYGPLSGRSFEERAIAAYMHDQLERKPRYKALPADSTDLLACVTCAGLGHHPRHCPQ 253
            P ++++ + Y ++G K L  G    Y FVR+++++P D+E + ++G  SG SFEER + AY    LE K        D T L  C  C    H    CP+
Sbjct:  115 PAYINRCLQYCSRGSKALPVGTLAAYRFVRDNFLVPRDIE-DPRFGAYSGTSFEERVLRAYSLGMLETKG-----DVDKTTLKVCTYCGCERHVRDECPE 208          
BLAST of NO23G00310 vs. NCBI_GenBank
Match: EJK59705.1 (hypothetical protein THAOC_20038 [Thalassiosira oceanica])

HSP 1 Score: 64.3 bits (155), Expect = 6.200e-7
Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = 0
Query:  153 PEHLHKVVIYKTKGIKPLSRGQRFVYTFVREHYILPHDLESNSKYGPLSGRSFEERAIAAYMHDQLERKPRYKALPADSTDLLACVTCAGLGHHPRHCPQ 253
            P ++++ + Y ++G K L  G    Y FVR+++++P D+E + ++G  SG SFEER + AY    LE K        D T L  C  C    H    CP+
Sbjct:  116 PAYINRCLQYCSRGSKALPVGTLAAYRFVRDNFLVPRDIE-DPRFGAYSGTSFEERVLRAYSLGMLETKG-----DVDKTTLKVCTYCGCERHVRDECPE 209          
The following BLAST results are available for this feature:
BLAST of NO23G00310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 10
Match NameE-valueIdentityDescription
OEU13080.13.500e-1037.50hypothetical protein FRACYDRAFT_270351 [Fragilario... [more]
GAX12254.14.600e-1039.81hypothetical protein FisN_1Hu185 [Fistulifera sola... [more]
XP_002286944.11.000e-934.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_008909310.11.100e-835.92hypothetical protein PPTG_14095 [Phytophthora para... [more]
XP_024577628.15.600e-835.24hypothetical protein PHYSODRAFT_523199 [Plasmopara... [more]
XP_002181689.11.300e-734.95predicted protein [Phaeodactylum tricornutum CCAP ... [more]
ETI40809.13.600e-735.92hypothetical protein, variant 1 [Phytophthora para... [more]
XP_009534518.16.200e-733.01hypothetical protein PHYSODRAFT_523199 [Phytophtho... [more]
EJK47483.16.200e-734.00hypothetical protein THAOC_33790 [Thalassiosira oc... [more]
EJK59705.16.200e-734.00hypothetical protein THAOC_20038 [Thalassiosira oc... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00310.1NO23G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00310.1NO23G00310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00310 ID=NO23G00310|Name=NO23G00310|organism=Nannochloropsis oceanica|type=gene|length=2326bp
GTGTGCCTCTTTGTGTATCTTTCTGTATGTGTGGTATTAGGTAGGTGAAA
AGTATATTCGACAGTATGTGCAGGTGAGCCAAGGTCTCCTCCCACAGTTA
TTGTGGTTTTGGGCTAACTTTGTTAGCTTTGCTACACTTTGCTTCCTTCT
CAGGTTGTTCGTCATGGTGACCAACGGACATGTCGTCAATGGCGATGCAG
CTGAACTCTGTGCCTCTGGCAGCTCCCAAGGGTTTCTTATTGACCAGGTA
TTGCCGTCTGACCATTGACAAAAACTATAAAATAAGGAAAAACATCCGAC
CATGAAGAGGACTGAAGCCGAATGCACAGCCATTGACGTACGTGACCATA
AATGTTATTCGTTTCTGATCCAGTACCTGCGCAAAAGTGACATCACTTCT
TACCCTCCCGCACTTATGCATGGAGGATAATTGATTATTTGACAACTTTG
CTGCGCTCCAATCACCAATGCATTCCATAATCATGAGACTTTTTGGGGTG
CCCCCCTTCGATCTCGGGAATGTCAACGGACGTCATCGTCATCTTCCTTC
CATTGCCCAAAGCCACTTTCACCGCGTTTTATTTTCGCTGCGACTCCCCT
CCCATCCTCCCGCTGAGAGCACCACACAGACGTTTTGATACTCTTCGATG
TCTGTATGCAATGGGAAAATGCGGACGTCATCATTACAAATCTCGCCCGC
CATGACAACTTGCCTCCCCGCCCCCCCGCGATGTCGCACTGCTATCTCCG
AACATTCTGAGTCCCGCCGACACAATCACACGCCTACCCAGCTGCCCCTC
ACTTCCACCCTTTCTTCTTTGCTTCCTCCTTTCCTCAGGACCATTTTGTT
GCTTCCAGCAGCGGCGGTAGTGCTGTATTAGAAGCCCATTGTCATCATGC
CTCGTTCCGTTAGGCGCTCCTCCTCCTCCTCTATACCTTCCAAGAAGCAG
CAGAAGCATCAATCCACCCTCACTAGGAGGCGTCCCCAGTCTTCCTTACG
CGATGCATTTGCTGCTTCATCTACCCCTACCTCCTCTCCTACCGCCTCAC
AAGAAGAGATGAAGGCAAAGACCAAGGTAGTGGTAGACCTCTTTGATGAC
GAGGAAGAGGAGGAGGGAGGGAAGGAGGCAAGAAAGGAGGAAGCGAAAGG
AGAGACCATCCTGCTTCTGCCCCCTGAGACTCAAAAGACTCCACAGAAAG
ATTCTTCTTCGGCAACGGCGCGGCTAAGTAAAAAGAGTAAGATGGCGAAG
GAGGAGGAGGAAGAGAGGGAGGGAGGGAGGGAGGAGAAGGAGGAGTTGAA
GCCAATGGAGGAGAAGGTGGTGGAGGAGGAGGAAGGAAAAGCAAAGTTTG
TGCCAGAGCATTTGCACAAGgtgaggaagggagggagggaaggaggtggg
gaaggagaaagagcgaaccggaaatggtgaggcctccttcggcctgtttg
aatgtgtattcatccctccttccctctctgcttccttccctccctccctc
cgccgtctctagGTGGTGATCTACAAGACGAAGGGTATCAAACCACTCTC
GCGGGGACAGCGATTTGTATATACGTTTGTGCGGgtacggcagtgaggga
gggagggagggaaggagtgagggagggagggagaaaaagacgaatggaac
tacccgagtaaatatttttacggagggcgacagggcaggagggatgaagg
gagggagaaagaagggcatgcgcgacgctggtcatacgaaaggcaggtca
atcacacacctcaccacaaacagGAGCACTATATCCTGCCCCACGACCTG
GAGAGCAACAGCAAGgtgagaacacgacgaggatgacccctggaagatac
atccttagcaatcctccctccctccctccctccctccctccctccctccc
tcccttcctcgtaccttgtccaccgaaagtaacccgtcttacctccctcc
ctccctccctccctccctccctccctcagTATGGTCCTCTCTCTGGCAGA
TCTTTTGAAGAGCGGGCCATCGCCGCTTACATGCACGACCAACTGGAGCG
CAAgtaagcctcgcccctcccccccttttccccatcctccctccctctct
tccgccctccctccctgcctctctccctgcatttcttcccctctttctct
atcgtgcagttctctaatctcaagacctcacgccgtcctgacttcccccc
ccctccccctattccctcctcagGCCTCGGTATAAGGCGTTGCCGGCGGA
TAGTACCGATCTGTTGGCTTGTGTGACTTGCGCGGGACTCGGGCACCATC
CTCGGCATTGCCCTCAGGGGTTGTAG
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protein sequence of NO23G00310.1

>NO23G00310.1-protein ID=NO23G00310.1-protein|Name=NO23G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MPRSVRRSSSSSIPSKKQQKHQSTLTRRRPQSSLRDAFAASSTPTSSPTA
SQEEMKAKTKVVVDLFDDEEEEEGGKEARKEEAKGETILLLPPETQKTPQ
KDSSSATARLSKKSKMAKEEEEEREGGREEKEELKPMEEKVVEEEEGKAK
FVPEHLHKVVIYKTKGIKPLSRGQRFVYTFVREHYILPHDLESNSKYGPL
SGRSFEERAIAAYMHDQLERKPRYKALPADSTDLLACVTCAGLGHHPRHC
PQGL*
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Synonyms
Publications