NO23G00250, NO23G00250 (gene) Nannochloropsis oceanica

Overview
NameNO23G00250
Unique NameNO23G00250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2763
Alignment locationchr23:105632..108394 +

Link to JBrowse

Properties
Property NameValue
DescriptionSerine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:105632..108394 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO23G00250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00250.1NO23G00250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|193265gene_8362Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00250.1NO23G00250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00250 ID=NO23G00250|Name=NO23G00250|organism=Nannochloropsis oceanica|type=gene|length=2763bp
GTTCCCAATCTATACATAGTTCACTTAACTTTTTTAATTTTTTTAACCAT
AAGTGAGTACCGCCAAAAGGAAACACCCCGGGGGATGGGGGACAGATCAC
GGAGTGGAGTGTATATAATGAGTTAGGAGACTTGTAATTCCATTTGTTGC
GAATCGTTGCGGGTTTGGGTATGAGGCGGCAGGAATCCACCGTCTTGAGC
CATCAGGAGGAATGCCTGGGCTGCCTGTATATCCACGCACTAATAAAAAC
ACCAGTGCTCAAATCCTCAATCTCGCTCTCACTTTCTCCACTGGCGCGTT
AAGGGGTGATGCGCGTACCAGTCCAGGCAGGCAGCGTATGGCTGCTGAAA
ATGAACGAATGCCGACCGCTGTAAAAGATTATTCGTCTTTCAAAATGCAC
CGCCCGAGGTGACGAGTCTCGCCGAACTTTGAAGCCGTTTTCTGTTCTGA
TACGTCAAGAGGTATGTCGATCACTTGTATGATGAGGCGTCCAATATCAC
TCACCGGCGAGACGTAACAATTTACTGGCAGCGGCAGGGTCCGCGAACCA
CAGGCGGGTGGATGCCTGCACCACTCTATCACATCGGAACGCCCTTGCCT
CCCAGCTGCCTGAACTTGAATTTCAAGTAATCGCACATACCGCGCCGCTG
AAATATTGCGGCGAATGAGAGGCCGAAGTTGTCAAAAAACGCGACCTGCT
CCATGCTCCACACTCATTTACATTGAAAATCATACAGATATTTCCATTAT
GGAGCTGCCTGCCGGAGCCGAGGGAATGACATCGCCGCCGCAGCAGCAAC
AGGTTGAAGGCCAAAATCTCTTACAGCACCCGCACCAGCAGCACTGGCAG
CATCAGCACCACCAGCAGCAGTCCATAATTGCTATGGAGGAAGAGATGCC
GGTCGCAGCACCACGAGATGCTGTTGGAGCCGCAGGAGCAGCAGTAGGAA
CTAAACGACCGTGTAAGACGAACATGCTGGAGGAGGGAGAGGAGAGAGCA
GCGGAGAACGAAGTGGGCGATGGTAGGGAAGTGTGGCGAGATGTGTTGAA
ATCTGAAAGCGTTCCAGCTCTCCGAAAGATTTTCGCACGCTCACCGACGA
AGGTCGTCCAATGGCTTTTGGAGGAAGAGCTGGAAAGAGGGGAGACAGCA
GCAGCAGCAGCAGCAGCAGCGGGCGGAGAAGGGGGGGGAGGAGTGGGAGA
TAACGAGAGGGAAGGGAGGCAGACTGTGTTGCATCTATGCGCTATGAAGG
GAGAGACGGATATGATGCAGACGATACTGGAGCTTGCTAGTGGCAACTGT
GGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTAGCGGTGGCGATGAAAG
AAGAAAAACGAGAGGAGGAGGAGAAGAAGGAAAAGAAGGAGAAACCGGAA
TTCAGCGACTGCACGGCGTTCTCTCGAAACGGAACGCTCAGGGCCGGACC
CCCCTCTATCTTGCTGCTCAAAACGGACATGACAAGTGTGTAGCCATGCT
CCTCTCCCTCTCTTCCTCCCTCCCGCCTTCCCCCCCTTCCTTCTCCTTCC
CTCCTGCGGCATCGTCGCCAACAGCACCACCACAACCACAGATAGTGGCA
GCAGCAGCAGGAGCAGCAGGAGCAGAAGCATCGACCACCACCACCATTCC
CTCTCTCCGTCCCTCCCTCCACGCCCTTCCTGATCACCACGGGACGACGC
CTCTTCTCATCGCCACAAGAAGAGGACACACCGCCGTCGTCCGGCTACTG
CTGCAGGCATACCGGGAGGAAGGGAAGGAGGAGGGCGTGGACGCCCCAGA
TGCCATGGGCCGCACCGCTTTTTTTGAAGCCTGTCGGTTCGGTCGAGAGG
AGgtaatgagtctccctccctccctccctccctccctccctccccctcct
ccaagcaggcaccaatcgcatccttggtttggcccatattctcatccgct
acccctccctccctcgcttcctccctccctccctagATCATTCCACTGCT
CCTCCAAGCAGGGGCGAGTCCTCTTCTAGGGCCTTCGCTCCCCCTCCCCG
CCGCCCGCCGACAGGGAAGAGGCAGGACATTACTGGATCAGATCGAGgtc
aggagggaaggagggaggaaaggagggaaagagggaccagagaggtatcc
tcctctcaccctgtgcatattctcgttctattccccaccttttcccttct
ttcccactcatcgcttcctccctccctcctttcctccccccctccctccc
tccctctctcatcagAAAGCAACTGTTGAGCCGCAACGGTCTTTCCTCCT
TCTCAAGATTCGAGTCCTCACTGAACTTACCTACACCTTGAACAACGACC
TCTACCTCCCTCCCTGTCTCCCTCCCTCCCTCCCTCCCTCCTCATCTTCC
TCCTCTGTCATCAAGGCCTTGCCGGCTTGTGTACGGGGGAGGGTGGAGGG
AGGGAAAGAGGGAAAGAGTGGGGGAGGGGATGCCATGCCATGGGTGGAGA
TAAGGGGGGAGACAGAGCAAGCATACCGAGACGAGATTGACAGAGAGAGg
tacgttagagttagggaaagagggggagggagggagggagcaagaaacag
gttgagaaacacggagcttccttagtaatgatactccctcccttcctctc
ttctcccttccctcagGATTCTGGCCGTTCTCTCTCTTTGTGCGGATGGT
ACCTCCTTGCCTTGGGAGTTGTTCGTCGAGCTAGAGGGGTTCCTTCCAAC
ACAGTTTGATTGA
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protein sequence of NO23G00250.1

>NO23G00250.1-protein ID=NO23G00250.1-protein|Name=NO23G00250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=560bp
MRGRSCQKTRPAPCSTLIYIENHTDISIMELPAGAEGMTSPPQQQQVEGQ
NLLQHPHQQHWQHQHHQQQSIIAMEEEMPVAAPRDAVGAAGAAVGTKRPC
KTNMLEEGEERAAENEVGDGREVWRDVLKSESVPALRKIFARSPTKVVQW
LLEEELERGETAAAAAAAAGGEGGGGVGDNEREGRQTVLHLCAMKGETDM
MQTILELASGNCGSSSSSSSSSSSGGDERRKTRGGGEEGKEGETGIQRLH
GVLSKRNAQGRTPLYLAAQNGHDKCVAMLLSLSSSLPPSPPSFSFPPAAS
SPTAPPQPQIVAAAAGAAGAEASTTTTIPSLRPSLHALPDHHGTTPLLIA
TRRGHTAVVRLLLQAYREEGKEEGVDAPDAMGRTAFFEACRFGREEIIPL
LLQAGASPLLGPSLPLPAARRQGRGRTLLDQIEKATVEPQRSFLLLKIRV
LTELTYTLNNDLYLPPCLPPSLPPSSSSSSVIKALPACVRGRVEGGKEGK
SGGGDAMPWVEIRGETEQAYRDEIDRERILAVLSLCADGTSLPWELFVEL
EGFLPTQFD*
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Synonyms
Publications