NO23G00180, NO23G00180 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO23G00180 vs. NCBI_GenBank
Match: EWM28938.1 (Cupin, RmlC-type [Nannochloropsis gaditana] >EWM28939.1 Cupin, RmlC-type [Nannochloropsis gaditana]) HSP 1 Score: 166.0 bits (419), Expect = 1.100e-37 Identity = 77/106 (72.64%), Postives = 90/106 (84.91%), Query Frame = 0 Query: 77 GVGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGDELVDPTGQYRLNKSHSARNIGASIFKEMLIEKK 183 GVG+R+LHED IKVWEM+LQPGELAPLHTHEYPYTFIVESGST+EVRGA +EHL T TA G+V SF L GDELV+ G R++K+HSARN+G S F+E+LIEKK Sbjct: 84 GVGTRLLHEDSHIKVWEMVLQPGELAPLHTHEYPYTFIVESGSTLEVRGASDEHLSTVTAEVGQVFSFTLEGDELVEVKGGSRIDKTHSARNVGESEFRELLIEKK 189
BLAST of NO23G00180 vs. NCBI_GenBank
Match: XP_005852437.1 (cupin 2 barrel domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU23396.1 cupin 2 barrel domain-containing protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 122.1 bits (305), Expect = 1.800e-24 Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 0 Query: 77 GVGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIG 149 GVG+R+LHED IKVWEM+LQPGELAPLHTHEYPYTFIV+SGST+EVRGA +EHL T TA G+V SF L G Sbjct: 84 GVGTRLLHEDSHIKVWEMVLQPGELAPLHTHEYPYTFIVQSGSTLEVRGASDEHLSTVTAEVGQVFSFTLEG 155
BLAST of NO23G00180 vs. NCBI_GenBank
Match: OUV23102.1 (hypothetical protein CBC48_19270 [bacterium TMED88]) HSP 1 Score: 92.0 bits (227), Expect = 2.000e-15 Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 0 Query: 78 VGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGDELVDPTGQ-YRLNKSHSARNIGASIFKEMLIEKK 183 VGS VL EDD+IKVW+ L PGE P+HTH Y F V GST++V A L G++++ + GDELV + R+ +HSARN G ++E+L+EKK Sbjct: 4 VGSNVLFEDDKIKVWDFTLAPGEQTPIHTHHMEYVFYVIKGSTLDVFDANGTRLKPLVLSDGDLVALRIEGDELVIIGDESKRVPVTHSARNAGPEPYRELLVEKK 109
BLAST of NO23G00180 vs. NCBI_GenBank
Match: EJK49424.1 (hypothetical protein THAOC_31703 [Thalassiosira oceanica]) HSP 1 Score: 87.4 bits (215), Expect = 5.000e-14 Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 0 Query: 78 VGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGDELVDPTG---QYRLNKSHSARNIGASIFKEMLIEKK 183 VGS VL+EDD ++VW L PGE+ +H H+Y Y F+ + +EV G + L FTA AG VL F L+GD L++P G + + + H+A+NIG S + E+L E K Sbjct: 56 VGSSVLYEDDSVRVWNFTLAPGEMTSMHRHDYDYHFVAIKPTQLEVYGEDGSRLFDFTA-AG-VLGFKLVGD-LLEPIGIELPWPVPRVHAAKNIGESEYLEILFESK 160
BLAST of NO23G00180 vs. NCBI_GenBank
Match: ODT33730.1 (hypothetical protein ABS55_12645 [Lautropia sp. SCN 70-15]) HSP 1 Score: 75.9 bits (185), Expect = 1.500e-10 Identity = 39/109 (35.78%), Postives = 64/109 (58.72%), Query Frame = 0 Query: 77 GVGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGD--ELVDPTGQ-YRLNKSHSARNIGASIFKEMLIEKK 183 GVG+ L E+D++ VW +L+PGE P+HTHE+ Y + GS+++V + + L T G V L E+V T + R+ +HSA+N+G + ++E+L+E K Sbjct: 3 GVGTEKLFENDKVIVWNFVLEPGEQTPIHTHEHEYMWYAIEGSSLQVFDDQGKDLGTLPVPTGTVYQLKLEDGHLEVVSETAKGARVPVTHSAKNVGPTRYREILVEWK 111
BLAST of NO23G00180 vs. NCBI_GenBank
Match: OUX49347.1 (hypothetical protein CBE42_07480 [Methylococcaceae bacterium TMED282]) HSP 1 Score: 75.9 bits (185), Expect = 1.500e-10 Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 0 Query: 78 VGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGDELVDPTGQ-YRLNKSHSARNIGASIFKEMLIEKK 183 VG+ L E++++ +WE IL+PGE +H HE+ Y F G+ ++V AE L T G+ +F + EL+ + R+ H A+N G S ++E+L+E K Sbjct: 4 VGTTKLFENEKVIIWEFILEPGEETAMHKHEHDYVFYALEGAPLQVHDAEGNDLGTLPVATGDTYAFRVEKGELISTDAKNLRVPTLHKAKNTGTSRYREILVESK 109
BLAST of NO23G00180 vs. NCBI_GenBank
Match: WP_079492082.1 (hypothetical protein [Burkholderia sp. CF099] >SKC99492.1 hypothetical protein SAMN05445504_7764 [Burkholderia sp. CF099]) HSP 1 Score: 74.3 bits (181), Expect = 4.400e-10 Identity = 38/109 (34.86%), Postives = 62/109 (56.88%), Query Frame = 0 Query: 77 GVGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGD--ELVDPTGQ-YRLNKSHSARNIGASIFKEMLIEKK 183 GVGS + E+D + VW L+PG PL THE+ Y + G+ +++ E++ L TF G + S NL E++ G+ R+ +H ARN G++ ++E+L+E K Sbjct: 3 GVGSEKVFENDYVIVWNFTLEPGAFTPLDTHEHNYMWYAIQGAPLQIFDEEDKDLGTFDVPTGAIYSLNLDNGYLEVLSEIGKGARVPATHKARNAGSTPYREVLVEYK 111
BLAST of NO23G00180 vs. NCBI_GenBank
Match: OJW87036.1 (hypothetical protein BGO66_16705 [Alicycliphilus sp. 69-12]) HSP 1 Score: 73.6 bits (179), Expect = 7.500e-10 Identity = 38/109 (34.86%), Postives = 62/109 (56.88%), Query Frame = 0 Query: 77 GVGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGD--ELVDPTGQ-YRLNKSHSARNIGASIFKEMLIEKK 183 GVGS L E+D+I VW L+PGE P+HTHE+ Y + G+ ++V + + L T G V S + E++ G+ ++ HSA+N+G + ++E+L+E K Sbjct: 3 GVGSEKLFENDKIIVWNFELKPGEQTPIHTHEHSYMWYSIQGTNLQVFDEDGKDLGTLEVPTGSVYSLKVENGTIEVMSDVGKGVKIPAKHSAKNVGTTHYREILVEYK 111
BLAST of NO23G00180 vs. NCBI_GenBank
Match: WP_085932755.1 (hypothetical protein [Enhydrobacter aerosaccus] >SJZ44321.1 hypothetical protein SAMN02745126_01081 [Enhydrobacter aerosaccus]) HSP 1 Score: 71.2 bits (173), Expect = 3.700e-9 Identity = 36/110 (32.73%), Postives = 60/110 (54.55%), Query Frame = 0 Query: 77 GVGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSF---NLIGDELVDPTGQYRLNKSHSARNIGASIFKEMLIEKKT 184 GVG+ + E+D++ VW L PGE P+HTHE+ Y + G+ +++ + + L T G V S N + L +P R+ +H ARN G+ ++E+L+E K+ Sbjct: 3 GVGTEKVFENDKVIVWNFTLAPGEETPIHTHEHAYMWYAIEGAPLQIFDRDGKDLGTLEVPTGAVYSLKYDNGFLEVLSEPGKGMRVPATHKARNAGSKPYREVLVEYKS 112
BLAST of NO23G00180 vs. NCBI_GenBank
Match: WP_103738332.1 (hypothetical protein [Diaphorobacter sp. LR2014-1] >POR10062.1 hypothetical protein BV908_12565 [Diaphorobacter sp. LR2014-1]) HSP 1 Score: 70.9 bits (172), Expect = 4.800e-9 Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 0 Query: 77 GVGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGDELVDPTGQ----YRLNKSHSARNIGASIFKEMLIEKKT 184 GVGS L E+D++ VW L+PGE P+HTHE+ Y + G+ ++V L T G V S + D ++ + ++ HSA+N G + ++E+L+E KT Sbjct: 3 GVGSEKLFENDKVIVWNFELKPGEQTPIHTHEHSYVWYSIQGTDLQVFDEHGNDLGTLEVPTGAVYSLK-VEDGFIEVMSEICKGVKIPAKHSAKNAGTTHYREILVEYKT 112 The following BLAST results are available for this feature:
BLAST of NO23G00180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 17
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO23G00180 ID=NO23G00180|Name=NO23G00180|organism=Nannochloropsis oceanica|type=gene|length=1464bpback to top protein sequence of NO23G00180.1 >NO23G00180.1-protein ID=NO23G00180.1-protein|Name=NO23G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=186bpback to top Synonyms
Publications
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