NO23G00180, NO23G00180 (gene) Nannochloropsis oceanica

Overview
NameNO23G00180
Unique NameNO23G00180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1464
Alignment locationchr23:82209..83672 +

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Properties
Property NameValue
DescriptionCupin, RmlC-type
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:82209..83672 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011051RmlC_Cupin
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO23G00180 vs. NCBI_GenBank
Match: EWM28938.1 (Cupin, RmlC-type [Nannochloropsis gaditana] >EWM28939.1 Cupin, RmlC-type [Nannochloropsis gaditana])

HSP 1 Score: 166.0 bits (419), Expect = 1.100e-37
Identity = 77/106 (72.64%), Postives = 90/106 (84.91%), Query Frame = 0
Query:   77 GVGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGDELVDPTGQYRLNKSHSARNIGASIFKEMLIEKK 183
            GVG+R+LHED  IKVWEM+LQPGELAPLHTHEYPYTFIVESGST+EVRGA +EHL T TA  G+V SF L GDELV+  G  R++K+HSARN+G S F+E+LIEKK
Sbjct:   84 GVGTRLLHEDSHIKVWEMVLQPGELAPLHTHEYPYTFIVESGSTLEVRGASDEHLSTVTAEVGQVFSFTLEGDELVEVKGGSRIDKTHSARNVGESEFRELLIEKK 189          
BLAST of NO23G00180 vs. NCBI_GenBank
Match: XP_005852437.1 (cupin 2 barrel domain-containing protein, partial [Nannochloropsis gaditana CCMP526] >EKU23396.1 cupin 2 barrel domain-containing protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 122.1 bits (305), Expect = 1.800e-24
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 0
Query:   77 GVGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIG 149
            GVG+R+LHED  IKVWEM+LQPGELAPLHTHEYPYTFIV+SGST+EVRGA +EHL T TA  G+V SF L G
Sbjct:   84 GVGTRLLHEDSHIKVWEMVLQPGELAPLHTHEYPYTFIVQSGSTLEVRGASDEHLSTVTAEVGQVFSFTLEG 155          
BLAST of NO23G00180 vs. NCBI_GenBank
Match: OUV23102.1 (hypothetical protein CBC48_19270 [bacterium TMED88])

HSP 1 Score: 92.0 bits (227), Expect = 2.000e-15
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 0
Query:   78 VGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGDELVDPTGQ-YRLNKSHSARNIGASIFKEMLIEKK 183
            VGS VL EDD+IKVW+  L PGE  P+HTH   Y F V  GST++V  A    L       G++++  + GDELV    +  R+  +HSARN G   ++E+L+EKK
Sbjct:    4 VGSNVLFEDDKIKVWDFTLAPGEQTPIHTHHMEYVFYVIKGSTLDVFDANGTRLKPLVLSDGDLVALRIEGDELVIIGDESKRVPVTHSARNAGPEPYRELLVEKK 109          
BLAST of NO23G00180 vs. NCBI_GenBank
Match: EJK49424.1 (hypothetical protein THAOC_31703 [Thalassiosira oceanica])

HSP 1 Score: 87.4 bits (215), Expect = 5.000e-14
Identity = 47/108 (43.52%), Postives = 67/108 (62.04%), Query Frame = 0
Query:   78 VGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGDELVDPTG---QYRLNKSHSARNIGASIFKEMLIEKK 183
            VGS VL+EDD ++VW   L PGE+  +H H+Y Y F+    + +EV G +   L  FTA AG VL F L+GD L++P G    + + + H+A+NIG S + E+L E K
Sbjct:   56 VGSSVLYEDDSVRVWNFTLAPGEMTSMHRHDYDYHFVAIKPTQLEVYGEDGSRLFDFTA-AG-VLGFKLVGD-LLEPIGIELPWPVPRVHAAKNIGESEYLEILFESK 160          
BLAST of NO23G00180 vs. NCBI_GenBank
Match: ODT33730.1 (hypothetical protein ABS55_12645 [Lautropia sp. SCN 70-15])

HSP 1 Score: 75.9 bits (185), Expect = 1.500e-10
Identity = 39/109 (35.78%), Postives = 64/109 (58.72%), Query Frame = 0
Query:   77 GVGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGD--ELVDPTGQ-YRLNKSHSARNIGASIFKEMLIEKK 183
            GVG+  L E+D++ VW  +L+PGE  P+HTHE+ Y +    GS+++V   + + L T     G V    L     E+V  T +  R+  +HSA+N+G + ++E+L+E K
Sbjct:    3 GVGTEKLFENDKVIVWNFVLEPGEQTPIHTHEHEYMWYAIEGSSLQVFDDQGKDLGTLPVPTGTVYQLKLEDGHLEVVSETAKGARVPVTHSAKNVGPTRYREILVEWK 111          
BLAST of NO23G00180 vs. NCBI_GenBank
Match: OUX49347.1 (hypothetical protein CBE42_07480 [Methylococcaceae bacterium TMED282])

HSP 1 Score: 75.9 bits (185), Expect = 1.500e-10
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 0
Query:   78 VGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGDELVDPTGQ-YRLNKSHSARNIGASIFKEMLIEKK 183
            VG+  L E++++ +WE IL+PGE   +H HE+ Y F    G+ ++V  AE   L T     G+  +F +   EL+    +  R+   H A+N G S ++E+L+E K
Sbjct:    4 VGTTKLFENEKVIIWEFILEPGEETAMHKHEHDYVFYALEGAPLQVHDAEGNDLGTLPVATGDTYAFRVEKGELISTDAKNLRVPTLHKAKNTGTSRYREILVESK 109          
BLAST of NO23G00180 vs. NCBI_GenBank
Match: WP_079492082.1 (hypothetical protein [Burkholderia sp. CF099] >SKC99492.1 hypothetical protein SAMN05445504_7764 [Burkholderia sp. CF099])

HSP 1 Score: 74.3 bits (181), Expect = 4.400e-10
Identity = 38/109 (34.86%), Postives = 62/109 (56.88%), Query Frame = 0
Query:   77 GVGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGD--ELVDPTGQ-YRLNKSHSARNIGASIFKEMLIEKK 183
            GVGS  + E+D + VW   L+PG   PL THE+ Y +    G+ +++   E++ L TF    G + S NL     E++   G+  R+  +H ARN G++ ++E+L+E K
Sbjct:    3 GVGSEKVFENDYVIVWNFTLEPGAFTPLDTHEHNYMWYAIQGAPLQIFDEEDKDLGTFDVPTGAIYSLNLDNGYLEVLSEIGKGARVPATHKARNAGSTPYREVLVEYK 111          
BLAST of NO23G00180 vs. NCBI_GenBank
Match: OJW87036.1 (hypothetical protein BGO66_16705 [Alicycliphilus sp. 69-12])

HSP 1 Score: 73.6 bits (179), Expect = 7.500e-10
Identity = 38/109 (34.86%), Postives = 62/109 (56.88%), Query Frame = 0
Query:   77 GVGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGD--ELVDPTGQ-YRLNKSHSARNIGASIFKEMLIEKK 183
            GVGS  L E+D+I VW   L+PGE  P+HTHE+ Y +    G+ ++V   + + L T     G V S  +     E++   G+  ++   HSA+N+G + ++E+L+E K
Sbjct:    3 GVGSEKLFENDKIIVWNFELKPGEQTPIHTHEHSYMWYSIQGTNLQVFDEDGKDLGTLEVPTGSVYSLKVENGTIEVMSDVGKGVKIPAKHSAKNVGTTHYREILVEYK 111          
BLAST of NO23G00180 vs. NCBI_GenBank
Match: WP_085932755.1 (hypothetical protein [Enhydrobacter aerosaccus] >SJZ44321.1 hypothetical protein SAMN02745126_01081 [Enhydrobacter aerosaccus])

HSP 1 Score: 71.2 bits (173), Expect = 3.700e-9
Identity = 36/110 (32.73%), Postives = 60/110 (54.55%), Query Frame = 0
Query:   77 GVGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSF---NLIGDELVDPTGQYRLNKSHSARNIGASIFKEMLIEKKT 184
            GVG+  + E+D++ VW   L PGE  P+HTHE+ Y +    G+ +++   + + L T     G V S    N   + L +P    R+  +H ARN G+  ++E+L+E K+
Sbjct:    3 GVGTEKVFENDKVIVWNFTLAPGEETPIHTHEHAYMWYAIEGAPLQIFDRDGKDLGTLEVPTGAVYSLKYDNGFLEVLSEPGKGMRVPATHKARNAGSKPYREVLVEYKS 112          
BLAST of NO23G00180 vs. NCBI_GenBank
Match: WP_103738332.1 (hypothetical protein [Diaphorobacter sp. LR2014-1] >POR10062.1 hypothetical protein BV908_12565 [Diaphorobacter sp. LR2014-1])

HSP 1 Score: 70.9 bits (172), Expect = 4.800e-9
Identity = 37/111 (33.33%), Postives = 59/111 (53.15%), Query Frame = 0
Query:   77 GVGSRVLHEDDQIKVWEMILQPGELAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGDELVDPTGQ----YRLNKSHSARNIGASIFKEMLIEKKT 184
            GVGS  L E+D++ VW   L+PGE  P+HTHE+ Y +    G+ ++V       L T     G V S   + D  ++   +     ++   HSA+N G + ++E+L+E KT
Sbjct:    3 GVGSEKLFENDKVIVWNFELKPGEQTPIHTHEHSYVWYSIQGTDLQVFDEHGNDLGTLEVPTGAVYSLK-VEDGFIEVMSEICKGVKIPAKHSAKNAGTTHYREILVEYKT 112          
The following BLAST results are available for this feature:
BLAST of NO23G00180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 17
Match NameE-valueIdentityDescription
EWM28938.11.100e-3772.64Cupin, RmlC-type [Nannochloropsis gaditana] >EWM28... [more]
XP_005852437.11.800e-2476.39cupin 2 barrel domain-containing protein, partial ... [more]
OUV23102.12.000e-1544.34hypothetical protein CBC48_19270 [bacterium TMED88... [more]
EJK49424.15.000e-1443.52hypothetical protein THAOC_31703 [Thalassiosira oc... [more]
ODT33730.11.500e-1035.78hypothetical protein ABS55_12645 [Lautropia sp. SC... [more]
OUX49347.11.500e-1033.96hypothetical protein CBE42_07480 [Methylococcaceae... [more]
WP_079492082.14.400e-1034.86hypothetical protein [Burkholderia sp. CF099] >SKC... [more]
OJW87036.17.500e-1034.86hypothetical protein BGO66_16705 [Alicycliphilus s... [more]
WP_085932755.13.700e-932.73hypothetical protein [Enhydrobacter aerosaccus] >S... [more]
WP_103738332.14.800e-933.33hypothetical protein [Diaphorobacter sp. LR2014-1]... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00180.1NO23G00180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|192854gene_8355Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00180.1NO23G00180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00180 ID=NO23G00180|Name=NO23G00180|organism=Nannochloropsis oceanica|type=gene|length=1464bp
ATGCACACAGAGCAGGATATGTTGCCGTTGCTTTTGGAAGACGAACGTCG
AGGGGCACGAAGAGTCGTGCTGCCGCTCCTGAAGACGCTGGGGCTTCTGC
TGGTGCTGCTGCTCACTATAACCTCACAGGCAGCAGCAATTACCTCGACC
ACCACGACAGTCAGCGACGGCTCCTGTAGCGCAGCATCTACGgtaagggc
aggtagcgtcgggaagtgcacagaggatgagtgacttgtctgtgcggcgt
ggcgcggttgccgtctcttgtccgtgcaggcacgagggcggtgatccacg
gcactgcgtccgacacgaaatagtctgtactcacagacattaaaatatgc
tgagctgagtctgaattcattgctgttcaatttttgggagggctgaactc
aagaaattgcgcgcctctctctctgcttacctcatttaatcccccattgg
tccgcccgcctcatctctacctcctccacttcacttctctcgcaatcccc
ccaaccatcctacatttgttttccccattaagTCACACGCCCATGACAGG
GACGAGAATCATAAAAACGGCGTAGGCAGCCGTGTCCTCCATGAAGATGA
CCAGATAAAGGTCTGGGAGATGgtaaggaagggaggaagggaggaaggga
gggaggggagtaagggagaggaggagagggggaggaaagacggaaagtca
aattggatggtacacaatgccggaaggaagaagggtggaaggggggggac
taagggagggagggaaggagggaatggagaccgccttttttcccttgaat
gtctcgtgacgcaagtacacgtctaagtttcctccctccctcccttcctc
ccttttcccaccagATCCTGCAGCCAGGAGAGTTGGCCCCGCTTCACACG
CATGAGTACCCCTACACCTTCATCGTGGAGgtaggaaatgagggaggttg
gtagggaggaagggagggagagaatgaatgacgggggcggtccacacaca
gtgagacgaacaactcaatgatcgggacttaaccctctttctcccctccc
tcttgctctccatccctccctctctgcctccctccctcctcccgaacggt
agAGCGGGTCTACCGTGGAAGTGCGGGGGGCCGAGGAAGAGCATCTGCTT
ACGTTTACGGCCCATGCAGGCGAGGTCCTCTCCTTTAACCTTATCGgtac
gtggagggagcgaaggaaggagggtgagaagtctgaggatagtggatttc
ctctctctttcctcgtctattgaaacggtaatcgcctacaaggaacatca
cctacacccttccctccctccctccctctccctctctccctccctcagGC
GACGAGCTGGTGGATCCCACGGGCCAATATCGCCTCAACAAGAGCCACAG
CGCTCGCAATATCGGTGCAAGTATCTTCAAGGAAATGTTGATCGAGAAAA
AGACTAAACAGTAA
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protein sequence of NO23G00180.1

>NO23G00180.1-protein ID=NO23G00180.1-protein|Name=NO23G00180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=186bp
MHTEQDMLPLLLEDERRGARRVVLPLLKTLGLLLVLLLTITSQAAAITST
TTTVSDGSCSAASTSHAHDRDENHKNGVGSRVLHEDDQIKVWEMILQPGE
LAPLHTHEYPYTFIVESGSTVEVRGAEEEHLLTFTAHAGEVLSFNLIGDE
LVDPTGQYRLNKSHSARNIGASIFKEMLIEKKTKQ*
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Synonyms
Publications