NO23G00150, NO23G00150 (gene) Nannochloropsis oceanica

Overview
NameNO23G00150
Unique NameNO23G00150
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1907
Alignment locationchr23:73063..74969 +

Link to JBrowse

Properties
Property NameValue
DescriptionAnkyrin repeat family protein, putative isoform 1
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:73063..74969 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
The following BLAST results are available for this feature:
BLAST of NO23G00150 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL037nonsL037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR095ncniR095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK008464NSK008464Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00150.1NO23G00150.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|405915gene_10830Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|632783gene_8352Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00150.1NO23G00150.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00150 ID=NO23G00150|Name=NO23G00150|organism=Nannochloropsis oceanica|type=gene|length=1907bp
CGACACAACTGCAAACAAAGCGTTGTGTTATCAGCATCTTTTCTCTGTTC
CCCTCGCCCACCACTCTGAACCGGCGCATCAAAGATCCGGCAACTCCGTC
AGCAAGCGGCCAGTCTCATAGCCCACTTCATGAACATGTTCCTCCCCCTA
GGCGCTCTCGCAGAGGATGATGTGGGCGACCTGCAAGACTTTCTCAATAC
CTACCACTGCGCCGCCAAGTATTTTATGGGCTTCGATGGGATGACCCTCC
TCCATTATGCCGCGCAACAAGGCAGTGGAAAAATCACTGCCTGGCTCGTT
CATCCTCATCGAGGCCTTGACTTGGACGCCCGCAACATCCAAGGACGCAC
CGCTCTCTTTATTGCTGCTTCTACCGGTGGACCAGAGAGCGCTAGGGTCG
TAGAGATTCTGTTGAAAGCAGGAGCAGATCCCTCCATCCCTACTTTGATT
GGGAGTACCGCTCTGATGGTGGCAAGGAGCGCAGAAGTCATGAAGTTACT
ATTGCAGTATCCGGCGAAGAAAGAAGAGGATGAGAATGATGAGGAAGTAG
GGATGACGGAGGTAACGGAGAAATCAAAAAAACGAGGAGAGAGAGGAGGG
AAACAATTGATTTTGTTAATTACTGGAGGAGGATTAGATGGGATAATGTA
TAAATATGAGAAAGACTGCGGTGAAGCAGGGACCAACGAAAAAGAAAGAG
GGTTAGGGTCATGTCGGGCATATCGATGCGGAGGAGAGAGTGACCGGGGA
GGAGGAGGGCGAGAAGGCGCACCTGGGAGTGACATGAGATGGAAAAGAAA
AGGGAAACGAATGAATTATGAGACACAAACACCATTGGACATAGATGCAA
TGGATGTCAACGGACACACCGCCCTGCACCACGCCATGTTCGGCGGCCGC
AAGGCATACTGGGCTCTTCCCCTCCTCCTTGCCAATGGAGCCAACCCTTG
GGTAAAAGACAGACGGGGAAGACTTTCTATCTACTACCTCTCGAGATATT
CCCAGCCCGCTTTTATCGAGGCTTTGCTTTCTAATGCCATGACCTCCCCT
CCGCCGCCGGTGTGGAGTTTGTGTAAAGCGCGGGCGGCAGAGGAAGTGGA
GGAGATGGAGGAGAGGGAGAAAGAGAGGGAGAAGGGGTGTGCAGATGGAC
AGGAAGTGAGCAGGCCGTCAGGAGTGCGGGGAGTATGTAGGACAGATATA
CGTAAAATAATGGGAGTATCGGAAGCGGAACTTATAGAGGAGGAAGAAGC
GGAGGAGGAAGGAGGGAAGGTGATGGCGCAGGAAGAGAGGGGAAGGGGGG
GGAAGGGTAGGGTGGCTTGTTCGGTGGAAGAAAGGGCAAAAAAGGGAAAC
AAGATGCCTCGTATTGTGTGGACAGGAGGAAGTATGGAGGTCAAGGAGGC
GAACGAGGTGGTGAAGGCTGTGGTTCGATTTGTGGTAGGTGGGGAAGGAG
GGAGGTTACGGAGGGAGGGAGGGAGAGCAGTATTGCCCACGGAGTTATTT
GCGGAGCTGGTAGAGATGATGGACTGGCAGGGACGGGAAGGCTGATTGGG
AGGAGAATGAGCGGGAAGTGGAGGAGTAGGCGGTGGTGAATGATGACGAG
AAGGAGGAAGGCAAGACGAGCAGAAGCATAAGGGGAGGATAATTAAATTC
TTGCGCAATTCATGCTCATTTTTATAGCCTATACTAAGATTGGCACTGAC
TCCTTCAGTCTTTATTGATAGAAACTTACTTCTATCGTACTTGTTTTGTT
GCTGCTGGTGGGTGGGCACGTATTTTCTCAAAAGGAAAGACACTAGGAAG
GCTGAATATTCATCTGTATGATTGGACATGCAAGAGGGCATTAGAAGATA
ACACAAATAGAACAATATTCATGTAATTTGCGGTAGGCGCGTAGTTCGAC
CAAAAAG
back to top

protein sequence of NO23G00150.1

>NO23G00150.1-protein ID=NO23G00150.1-protein|Name=NO23G00150.1|organism=Nannochloropsis oceanica|type=polypeptide|length=472bp
MNMFLPLGALAEDDVGDLQDFLNTYHCAAKYFMGFDGMTLLHYAAQQGSG
KITAWLVHPHRGLDLDARNIQGRTALFIAASTGGPESARVVEILLKAGAD
PSIPTLIGSTALMVARSAEVMKLLLQYPAKKEEDENDEEVGMTEVTEKSK
KRGERGGKQLILLITGGGLDGIMYKYEKDCGEAGTNEKERGLGSCRAYRC
GGESDRGGGGREGAPGSDMRWKRKGKRMNYETQTPLDIDAMDVNGHTALH
HAMFGGRKAYWALPLLLANGANPWVKDRRGRLSIYYLSRYSQPAFIEALL
SNAMTSPPPPVWSLCKARAAEEVEEMEEREKEREKGCADGQEVSRPSGVR
GVCRTDIRKIMGVSEAELIEEEEAEEEGGKVMAQEERGRGGKGRVACSVE
ERAKKGNKMPRIVWTGGSMEVKEANEVVKAVVRFVVGGEGGRLRREGGRA
VLPTELFAELVEMMDWQGREG*
back to top
Synonyms
Publications