NO23G00140, NO23G00140 (gene) Nannochloropsis oceanica

Overview
NameNO23G00140
Unique NameNO23G00140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1930
Alignment locationchr23:70904..72833 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:70904..72833 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO23G00140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL037nonsL037Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR095ncniR095Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR039ncniR039Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR047ngnoR047Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO23G00140.1NO23G00140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|643607gene_10831Nannochloropsis oceanica (N. oceanica CCMP1779)gene
jgi.p|Nanoce1779_2|632782gene_8351Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100698g2gene7437Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO23G00140.1NO23G00140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO23G00140 ID=NO23G00140|Name=NO23G00140|organism=Nannochloropsis oceanica|type=gene|length=1930bp
CAAAAAAAGTGTTCTCTCCTATACTGTTCCTTCCTTAAGAAGGACAATGA
TAAGAATCGCAAGCGGTGAAAAAGCGGTAACCGAGGTGCAGGGCACATGA
GTTCCGTAAGAGCAGAAAGACCATAACCCTGTGGTTCCGTCCTTCCCTCC
ATTGGCCTGAAAAGACGCAGCTGCCAACCCCCGTAGTAGGGCTTTCACTG
ATTTCGTTTGGGACGCTGAAAATACGGCGACAATTGGATAAAGGGCGGGT
ACTTAAAAGCCCTGTGATTTATATACATTTGTCGTGGCGGCAAGTTATTT
GAGGGTGTGAGGACTCAGCCATGTAGTACGCTTGCACAAGGCAGCTCTGG
GGCGTCCTTGTCGATTTGTGTGCGAGTACTCTGCTGCTGACCTTACCCCT
CTCTCTCCTCGTTTATGCATATACCCAATAAGTGGTACAGTCTATGTCTC
TGCCATTTTACCCTCATCGCACCGGCCCGTCCTCCTCTTCCCTCCACCAT
CATCATAGGGGCTCTGTCCTGCTCTCCGAGAGTCTATCGCACTTCCTCCC
CCTGGTTGAGAGTACACAGAATAACTTGGATTCTTCATCATCCACACACT
TATAGCTATCACTTCTTCTGCATCCTTATTCATATATTCCTACAGGCGAG
GCCGAAGGCCCGGGCAGTAAGTCGTTGCTATGTTTCGTCCTCTTCCTCCT
CGCGTTCCTCCTCCTTCCTTTTCCGTCACTTCTACAACATCTACTCAGCT
CTCCCTTAGTCATCCTCCCGCTCCCCCTGCTGCTGTTGAGAGTGTTGAGG
CAGCTAAGAAGGACAGCAGACACCACGGGCAGCATGAAGTGCCTTCTTCT
GAAATCGTGGGGATGGAGGGCTCGCGGGAAGAAGAGTATCAAATGGAGGT
AGTGATGCAAGAAAAGGAAGGGAGGGAAGGAGAAAGAGCGTGTCATGTGA
CACCTCCTCATCATAGACGGAATGCGGAGTGGGCGCGGGCGTTTCAGATG
TGCCTGCAAGCGATGGCGGAAGGGAAGGGTTTTGGAGAGGAGGCGGAGGG
GGAGGGAGGGAAGGAGGGGAAGGGAAAGGTGCAGAGGAGCGAGGATGAGA
AGGAGGAGAAAGAAAGAGAAGTGATGGAAGGGCTAGCATGGGGAATGGGA
TTGCTGGTGGAGTGAGAGAGGAAGGGAGGGAGAAAGAAAAAGAGGGAGGA
GAGGAGGAGGAGGCGGAGGCGGAAGAAGGGATATGATGAAATGAGAGTGC
GAGGCGCGGCATGTGGTGGCTTTACCTTACACAGTTAAGGTATGCATGTG
TGTAAAGAGAGTGTGTGCATTGTGTGCTTAGCATGAATAGGAAAGTGTGA
GGGTTAAGGTTAGGTGTACAGGTGTGTGAACAGGATCACTTGTAAGTAAG
CGCTTTCCATCATGGAATGGAGGAGTTTCTTAGGGGTGGGGAATGCAGGC
AATGGGGATAGAGGGATAGGGAAAGAATGGAAAAGTAAACGAAAAGGGAG
AGAATGTAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAAGAGGGAGC
GTGCGACAGCAAGCCGTCTTTCTCTGCAGAGCGAGAGAATCTTATTGCAG
CTGGTGAGAGACAGTGTGTGAGAATGCATAGGGGAGTGTGTGGGTGAGTG
TGTGTATGAAAGATGATAAATTGAATTAAGAATTTGCGGGAAGTGGAAGA
AGATGGAGAGTGAATAAAGTGAGAGAATGTAAAAGATGTCGGGCACGTGT
CGACTAAAAGAGACATCCTGTCTCTTTTTTATGTAAATGTGTACGTGAAA
GCAATATATATACATATACAGAGAGGGAGAGTGTGTGGGAGAGAGGACGG
GTGGAAGAATAGTGGGGTCGGTAAGTGCTAGTCAACAATAGCAGCAGGAA
AGACGAGGAAAATTTGTGCGTTATTTCGGT
back to top

protein sequence of NO23G00140.1

>NO23G00140.1-protein ID=NO23G00140.1-protein|Name=NO23G00140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MFRPLPPRVPPPSFSVTSTTSTQLSLSHPPAPPAAVESVEAAKKDSRHHG
QHEVPSSEIVGMEGSREEEYQMEVVMQEKEGREGERACHVTPPHHRRNAE
WARAFQMCLQAMAEGKGFGEEAEGEGGKEGKGKVQRSEDEKEEKEREVME
GLAWGMGLLVE*
back to top
Synonyms
Publications