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Properties
| Property Name | Value |
|---|
| Description | Zinc finger, C2H2 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr23 | genome | chr23:41608..46053 - |
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0003676 | nucleic acid binding |
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2/integrase_DNA-bd |
Homology
BLAST of NO23G00120 vs. NCBI_GenBank
Match: EWM23016.1 (Zinc finger, C2H2 [Nannochloropsis gaditana]) HSP 1 Score: 114.0 bits (284), Expect = 1.600e-21 Identity = 216/459 (47.06%), Postives = 242/459 (52.72%), Query Frame = 0
Query: 56 SPVLSPSLCLELESFLRPSVVGTLLPKYVS----AAQNFLSLPPEARSPPPAFPXXLXTSPLPFPPCQSREEVKAYVLDHKEALFRRWISSELKRQSMVSRFLAFCGLSFFLRPISVSGTITTYCVDVREENSDGTPGAVYTFEVSASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTGGLPSLSPPPLPQYIHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPNM-----HPPSYSPSLXXXXXXXSLPHGLKYVPPAHASAAAFGTPSLXXXXXXXXXXYFYPAQVDNGYSHAPAPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMTTGKGKKRNPVACEACGQIFSNKGNLIRHRQQSCRVLVK 506
+P S +LC+ELESFLR SV T L KYV+ XX +SPL PC +REE +AYV+D +E LFRRWIS K+ +MVS FL+F GLSF R I+ G TTYC+ ++EE DG PGA+Y+ EV+A P+LSPPPLP XXXXXXXXXXXXXXXXXXXXXXX P + S+ PS + P Y+PP+H XXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX K KKRNPVACEACGQ+FSNKGNLIRH QQSCRVLVK
Sbjct: 51 TPAFSHALCIELESFLRLSVDATYLSKYVAXXXXXXXXXXXXXXXXXXXXXXXXXXXTSSPLQLLPCGTREEARAYVIDRREPLFRRWISLYSKQLNMVSLFLSFLGLSFSARAIASQGGRTTYCIYLKEERLDGLPGALYSCEVTAPSSSTPSLPSSIPSSESKELYPEADGPSTTSSPLGTGVAKEEGREEGRGGAPEDLLQQHLHHYNPQ---------------------PALSPPPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGHYRPHPQPLSAQGYHSSFPPSCPPHGLNYASPENASYLPPSH-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTKKRNPVACEACGQVFSNKGNLIRHTQQSCRVLVK 487
The following BLAST results are available for this feature:
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO23G00120 ID=NO23G00120|Name=NO23G00120|organism=Nannochloropsis oceanica|type=gene|length=4446bp
ATGTCGACGCACGAAGTCAGCAGTTTGAAATCACCCAAGCAGCACACCCA
TACCTATCTAAGgtgacctggagctatccataggtctgatttcactttaa
ccacgttggtgcttgatacacgtcgcatccctatgtaaacattcgaggcc
tggctagtcttggtgtttggcgttgttgtcgatttcgggcgttctttttt
tggttgctcgacacgcacagactcgctctctctctcctctcctcccatct
ctccggtcgttcgcctctaaaccaaactgaaccccagccccccatctcac
gcctacctgctccctttacgcttcacagGAAAGGAGGCATGGCGACTAAT
GGCGGGCCTCCCCCTTCGCTCTCCTCCTCCTCCTCTTCCTCAACATCTTC
CTCTTCATCCCTTCCTTCTCCTTCCACTTCCTCGCCTGTCCTGAGCCCCT
CCCTCTGCCTCGAACTGGAGTCGTTCTTACGgtaagcaagttaacgattt
aacgagagcaacaaacaaggggcgagagaagaaaaacacacacgggaggc
attattaatggtcgcagagagagcagttctgatcattaggatgacgagca
tcatgatccatcaaatcattccgctttccttttctctgcatcacacgtgc
gtgcgtttttctctcttaccaacccttacttcctccctcactctctctct
tcctacctttttccccctctccccaagGCCCTCCGTCGTAGGCACGCTGC
TTCCCAAGTATGTCTCGGCAGCCCAAAATTTCCTCTCCCTCCCACCCGAA
GCTCGCTCGCCTCCTCCCGCATTCCCTCCCTCCCTCCCGACCTCGCCCTT
GCCGTTTCCTCCGTGCCAGAGCAGGGAAGAGGTGAAGGCTTATGTCCTAG
ATCACAAGGAGGCTCTGTTTCGGCGATGgtaagggagagaagaaaagatg
aagagagggaaaacggaggaaggagggggagggagttttgctgagtgacg
aaatcacccggatcatacatatttaatcaattggatcgttaattgattgt
aatagggttcacccagttccccttccgcccttctgtcctcccagcctccc
tctttttcttccaatgcaactggatcagcgtctgacgcctttttccctcc
cttcctccctccctcagGATCAGCTCCGAGCTGAAGCGCCAGAGCATGGT
GTCCCGCTTCCTGGCCTTTTGCGGGCTCTCCTTCTTCCTGCGCCCCATCT
CTGTTTCCGGTACCATCACCACATACTGCGTCGATGTGCGGGAAGAGgtg
tgtaggcacacgccctcctcccattcctccctcccacctcctcagttgga
catactcacctttctcttgccctccctccgtccctccctccctcccttag
AACTCCGACGGTACGCCTGGAGCGGTGTATACGTTTGAGGTCTCCGCCTC
CCCTTCCTCCCTCCCTCCTTCGGTCCCTTCTTCTATCCCTGCCTCGGAGG
AAGCCAAAGATTCATTTGCTGAAGCAGgtgagtcttggccctcccttttt
ccctccctcccgtcctgtgggcgtgcgtttcgaggcaggaacttctgggt
ccctctcgcctccccccctaattcaaacgacccttccactccctctttca
tcatcttctcactaatcaaccctccctccctccctccccccctccccctc
tctccttctccagATAATCCCTCCTCCTCCCTAACCTCCTCCTCCTCCTC
CTCCTCCCCCTCCTCCCTGGCCATCGGGATCATTAAGGACGGCGGGACCG
AGGGCGGGAGGGAGGAAGGGAGGGAAGGCGGGCACGAGGACCTCTTGCAG
CAGCAGCTGCACCACTACCCCCACCACCAGGACACGGGCGGCCTGCCCTC
TCTCTCTCCCCCTCCCCTTCCTCAGTACATCCATGAGCAGCATCAGCAGC
AACAGCAGCACCAGCAGCACCAGCAGCCGTCGTCGACACACCTCCATCAT
CTCCACCCCCATCGACAGCACCAGCCTCCCAACATGCATCCCCCCTCCTA
CTCCCCCTCCCTCCCCCCCACCCACGGCCCTCCCTCCCTTCCACACGGAC
TCAAATACGTCCCTCCCGCGCACGCGTCAGCGGCAGCTTTCGGAACTCCC
TCCCTCCCTCCCTCTCTCCCTCCCCCTCCTTCTTCCTACTTCTACCCCGC
GCAGgttagagagctgaagggagggagtgagggagcgagggggcggtctg
ctgtgctggtgtcaatatgtagatgggggggtatcttgaaatcagatttg
tcattctcacttcccctccctccctccctcccccctccctcctccctcca
gGTCGATAACGGCTACAGCCACGCCCCTGCTCCTTCCTCTTACGGGCACC
ACCACCAATTCCTTCTTCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAA
CAGGCTGCCTACCCCCCTCCCTACCAGGCCATGCTGGCCACTGCAGGAGG
CGGAGAGGGAGGGAGGGTGGAGCCGAAAAAGCGGAAGAGCAAGAGAGCGC
CCCCGGGAGGGCCTTACTTCGACGAAGAGGGAATGACCACAGgtagggag
ggagaaagagaatcaaggaggatgtcgagaataggggctcttacgacaac
tgtgtatattcgtggattcacttcccctccctccctccctgcagGCAAGG
GAAAGAAGCGCAACCCGGTAGCCTGCGAGGCTTGTGGGCAAATCTTCTCC
AACAAAGGGAACCTCATCCGACACCGGCAGCAGTCGTGCCGTGTACTGGT
CAAGTCCCGTCCCGCAGGCAGCGGCGGCAGCAGCAGCAGCAGCAACAGCA
ACAGCACCACCACCACCACCAGCAGTAGCAGTAGCAGCAGCAGCTCTCAA
GGCAGCAACGGCAGCGGCATGGGGGGGACTTCGAGCCTTCCTCCCTCCTC
CTCCTACCTCATGCCGTCTCAGCAGCAGCTCCTTCAGCAACAACAGCAGC
AGCAGCAACAGCAGCAGCAGCAGCAACAGCACCAGGTATACATGATGCAG
CATCAGGGAGGCGTCAATCTATAGGTACAGGAGAAAGGTAGGAAGAATGC
AGTAACAGCAGCAGCAGCAGCAGCTGGATTCGGTTAAGCAGGGAGAAAAA
CAGAAGGGGGAGTAATGTCGGTAGGAAGGAAATGGGAAAGAGGCAGACAG
AGAGAGAGAAAGTGCGTGTGTATGGGTGTGGCAAAGATCCACGAGACTGT
AGGGATTGGCGACACAGAGTCAGGTGACACAAGGAAAGGAACGGGAAAGA
GAGATGGAGGGAAGAGAACAAAGACGAGCGCTGAAAGCACGCGAGCCGTA
TAACATATCCTACATATAATTAATATATCCTACGTATGATTACCCTCCTG
CATGGCCCCAGTACCGCCGGCCTGCTCTTCTACTGCAGGTCGGCCTCTTC
CGGGTAGCCCTCTGAGATGAAATTAGATGAGGTGGGATAGAACGAGAAGC
CTCGCACATTGTGTCTGCTGGAACCGCCTCCTTTCCCTACGGTTGGAATC
GTCTGGTGGTGTGGTTGATATGCTCGTTTTGTAAGGCTACATAAAATGTG
TGTCCTTAGTAAGCAGAAGGGGACAAGAACAGGGAGAGAAAGACGTGAGA
AAGGAAGAGAAGAGCGCGCAGGGATGTCGGTCGAATCGCTTATTTTGATG
AGATGAAGAGGAAGACGGGTGCTCCAGTCAGTATATCCTCTCAGTCGTGG
ACGAAGACAGAGAAAGGGGGGGGGGGGAGACGTCAAAGAGTAGAAGAGAG
ACAGAGATAGGGAGGGAGATGAGCCCGCTTATCTTTTTCTAGCAATAGGA
CCTAGCCAGTGCGGGGATGAAAGAACGAGAAATAGGTCATGGGAGAGAAT
AAGGGCATGGGAGAGAAATACGCACACACACACATATACACGCACCCATA
TATACACACGCACACACGCACGAAGAGAGAGAGGGAAAGGAAGAAAGGAT
GATAAGGTCTTCGTAATTGAGAGGGGAAGAGATTTATAGAGGGAGAGGAG
AAGAGATTTATTGAGGGAGAGGCTGGTCACATGTTGAATGCCAAGTAATC
CTGGCCAACCATTCACGCCGTATCACACTAAAACTGACGCCACTACCCAC
ATATCGTCGTCATTTCTTCGTCTCTCATTCCCAGATAGAAGAAGAGGGGA
TAAGAGAGATGAAGAGGCACGCAAATTTGTGGGTGGGCTGGGCTTGCGGT
GCTTCGTGCCTTCCCTGGCACGAGGCCTCGCAAGGCAACGAACAACAAAA
AATACATGAACAAAACCAAAGCCACAAACTAAACATCTTTGAAAAAAATA
ACCACACAACAACAGCATCAAAGGACAACCAAAAGAAAGTTAATGATAAT
AGTAATCGAAAAAGAAAATGAGCATGACTTGACGAGAATACATGAG back to topprotein sequence of NO23G00120.1 >NO23G00120.1-protein ID=NO23G00120.1-protein|Name=NO23G00120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=595bp
MSTHEVSSLKSPKQHTHTYLRKGGMATNGGPPPSLSSSSSSSTSSSSSLP
SPSTSSPVLSPSLCLELESFLRPSVVGTLLPKYVSAAQNFLSLPPEARSP
PPAFPPSLPTSPLPFPPCQSREEVKAYVLDHKEALFRRWISSELKRQSMV
SRFLAFCGLSFFLRPISVSGTITTYCVDVREENSDGTPGAVYTFEVSASP
SSLPPSVPSSIPASEEAKDSFAEADNPSSSLTSSSSSSSPSSLAIGIIKD
GGTEGGREEGREGGHEDLLQQQLHHYPHHQDTGGLPSLSPPPLPQYIHEQ
HQQQQQHQQHQQPSSTHLHHLHPHRQHQPPNMHPPSYSPSLPPTHGPPSL
PHGLKYVPPAHASAAAFGTPSLPPSLPPPPSSYFYPAQVDNGYSHAPAPS
SYGHHHQFLLQQQQQQQQQQQQAAYPPPYQAMLATAGGGEGGRVEPKKRK
SKRAPPGGPYFDEEGMTTGKGKKRNPVACEACGQIFSNKGNLIRHRQQSC
RVLVKSRPAGSGGSSSSSNSNSTTTTTSSSSSSSSSQGSNGSGMGGTSSL
PPSSSYLMPSQQQLLQQQQQQQQQQQQQQQHQVYMMQHQGGVNL* back to top
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